Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016017

Physical Location & Seq

Genomic Coordinates Reverse (-)

22807785 .. 22810050

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCATCGGGGTGGGGAATCACCGGCAACAAAGGGCGGTGCTACGATTTCTGGGTCGACTTCAGCGAGTGCATGTCTCGCTGCTGTGAGCCCAAGGACTGCGTCCTCCTGCGCGAAGACTACCTCGAGTGCCTCCACCACTCCAAAGAGTTTCAACGAAGGAATCGTATTTACAAGGAGGAGCAACGTAAAATCAGGGCAGCTGCACGGGCCAAGGAGGGTGGGGAGGTTGATAAGCATCACCATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0010257 GO:0016020 GO:0016043 GO:0019866 GO:0022607 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032981 GO:0032991 GO:0033108 GO:0034622 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0065003 GO:0070469 GO:0071840 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Ndufs5

Protein Analysis

84

Amino Acids

9.84

Weight (kDa)

8.25

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47690 AT2G47690 AT2G47690 AT3G62790
fragaria_vesca	FvH4_2g25680
malus_domestica	MD02G1095800.v1.1 MD03G1287600.v1.1
prunus_persica	Prupe.8G260800_v2.0.a1
pyrus_communis	pycom03g22770 pycom11g27130
rosa_chinensis	RchiOBHm_Chr6g0293941
rosa_roxburghii	Rroxscaffold_7G00173820
rosa_samantha	Rh6BG359400 Rh6CG366700 Rh6DG353000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	3 cut(s)	81, 200, 203
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	13, 233
AvaI	CYCGRG	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	68, 190, 212
BcoDI	GTCTC	1 cut(s)	81
BisI	GCNGC	3 cut(s)	82, 201, 204
BlsI	GCNGC	3 cut(s)	83, 202, 205
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	210
BmsI	GCATC	2 cut(s)	14, 247
BpiI	GAAGAC	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	93, 213
Bse118I	RCCGGY	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	93, 213
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	68, 190, 212
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	93, 213
BssT1I	CCWWGG	2 cut(s)	93, 213
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 209
BstNSI	RCATGY	1 cut(s)	76
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	68, 190, 212
BstV2I	GAAGAC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	244
CfoI	GCGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	1 cut(s)	91
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	3 cut(s)	91, 203, 212
CviKI_1	RGCY	3 cut(s)	91, 203, 212
Eco130I	CCWWGG	2 cut(s)	93, 213
Eco24I	GRGCYC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	93, 213
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	93, 213
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 250
FatI	CATG	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	82, 201, 204
FokI	GGATG	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	82, 201, 204
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	3 cut(s)	82, 201, 204
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	18, 163
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	13, 233
Hpy166II	GTNNAC	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	72, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 209
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	4 cut(s)	37, 37, 122, 181
Lsp1109I	GCAGC	3 cut(s)	68, 190, 212
LweI	GCATC	2 cut(s)	14, 247
MaeII	ACGT	1 cut(s)	187
MboII	GAAGA	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	93
MnlI	CCTC	6 cut(s)	116, 134, 143, 172, 211, 220
MslI	CAYNNNNRTG	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	78, 209
NlaIII	CATG	1 cut(s)	76
NspI	RCATGY	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 163
PfeI	GAWTC	2 cut(s)	18, 163
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	83, 202, 205
PspPI	GGNCC	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	125
PsyI	GACNNNGTC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	10
SalI	GTCGAC	1 cut(s)	56
SatI	GCNGC	3 cut(s)	82, 201, 204
Sau96I	GGNCC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	4 cut(s)	126, 190, 205, 231
SfaNI	GCATC	2 cut(s)	14, 247
Sfr274I	CTCGAG	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	93, 213
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	57, 126
TfiI	GAWTC	2 cut(s)	18, 163
TseI	GCWGC	3 cut(s)	81, 200, 203
Tth111I	GACNNNGTC	1 cut(s)	101
XceI	RCATGY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.