Prupe.8G260800_v2.0.a1

NADH ubiquinone oxidoreductase 11.5kD subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
22042913 .. 22045590
2678 bp
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UTR
Exon/CDS
Intron
Prupe.8G260800.1

Sequence Viewer

Length: 252 bp
ATGGCATCGGGTTGGGGAATCACAGGGAACAAAGGGCGCTGCTACGATTTCTGGGTCGACTTCAGCGAGTGCATGTCTCGCTGCCGTCAGCCCAAGGACTGTGTTCTTCTTCGCGAAGACTACCTCGAGTGTCTTCACCACTCCAAAGAGTTTCAACGAAGAAACCGAATTTACAAGGAGGAGCAGCGTAAAATAAGGGCAGCTGCACGGGCCAAAGAGGGTGGAGAGGTTGATAAGCATCACCATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.9

Weight (kDa)

8.91

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016017)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 57
AccII CGCG 1 cut(s) 114
AcsI RAATTY 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 5 cut(s) 39, 81, 184, 200, 203
ApoI RAATTY 1 cut(s) 168
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 128, 233
AvaI CYCGRG 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 123, 125
BbvI GCAGC 5 cut(s) 26, 68, 190, 196, 212
BceAI ACGGC 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 40
BisI GCNGC 5 cut(s) 40, 82, 185, 201, 204
BlsI GCNGC 5 cut(s) 41, 83, 186, 202, 205
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 210
BmsI GCATC 2 cut(s) 14, 247
BpiI GAAGAC 2 cut(s) 123, 125
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 5 cut(s) 26, 68, 190, 196, 212
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 125
Bsp68I TCGCGA 1 cut(s) 114
BspANI GGCC 1 cut(s) 212
BspFNI CGCG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 101
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 78, 209
BstNSI RCATGY 1 cut(s) 76
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 5 cut(s) 26, 68, 190, 196, 212
BstV2I GAAGAC 2 cut(s) 123, 125
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 244
BtuMI TCGCGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 210
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 1 cut(s) 73
CviJI RGCY 3 cut(s) 91, 203, 212
CviKI_1 RGCY 3 cut(s) 91, 203, 212
Eco130I CCWWGG 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 76
FaiI YATR 2 cut(s) 74, 250
FatI CATG 1 cut(s) 72
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 5 cut(s) 40, 82, 185, 201, 204
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 5 cut(s) 40, 82, 185, 201, 204
GlaI GCGC 1 cut(s) 38
GluI GCNGC 5 cut(s) 40, 82, 185, 201, 204
HaeII RGCGCY 1 cut(s) 40
HaeIII GGCC 1 cut(s) 212
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 1 cut(s) 18
HphI GGTGA 2 cut(s) 128, 233
Hpy166II GTNNAC 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 72, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 209
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 2 cut(s) 9, 37
Lsp1109I GCAGC 5 cut(s) 26, 68, 190, 196, 212
LweI GCATC 2 cut(s) 14, 247
MboII GAAGA 5 cut(s) 98, 101, 125, 128, 171
MluCI AATT 1 cut(s) 168
MnlI CCTC 4 cut(s) 134, 172, 211, 220
MspA1I CMGCKG 1 cut(s) 203
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 78, 209
NlaIII CATG 1 cut(s) 76
NruI TCGCGA 1 cut(s) 114
NspI RCATGY 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 125
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 163
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 5 cut(s) 41, 83, 186, 202, 205
PspPI GGNCC 1 cut(s) 210
PspXI VCTCGAGB 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 203
RruI TCGCGA 1 cut(s) 114
SalI GTCGAC 1 cut(s) 56
SatI GCNGC 5 cut(s) 40, 82, 185, 201, 204
Sau96I GGNCC 1 cut(s) 210
SetI ASST 3 cut(s) 126, 205, 231
SfaNI GCATC 2 cut(s) 14, 247
Sfr274I CTCGAG 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 168
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 2 cut(s) 57, 126
TasI AATT 1 cut(s) 168
TfiI GAWTC 1 cut(s) 18
TseI GCWGC 5 cut(s) 39, 81, 184, 200, 203
XapI RAATTY 1 cut(s) 168
XceI RCATGY 1 cut(s) 76
XhoI CTCGAG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.