Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016017

Physical Location & Seq

Genomic Coordinates Forward (+)

13684375 .. 13687021

Gene Structure 2647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCTTCCGGCTGGGGAATCACCGGGAACAAAGGGCGCTGCTACGATTTCTGGGTCGACTTCAGCGAGTGCATGTCTCGCTGCCGGGAGCCCAAGGACTGCTCTCTCCTCCGCGAGGACTACCTCGAGTGCCTCCACCACTCCAAAGAGTTTCAACGGAGGAATCGAATTTACAAGGAGGAGCAGCGTAAACCAAGAGCAGCTGCACGGGCCAAGGAGGGTGGAGTTGTTAATGATCATCATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

82

Amino Acids

9.68

Weight (kDa)

8.68

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndufs5	PF10200	12 - 62	9.3e-06	NADH:ubiquinone oxidoreductase, NDUFS5-15kDa

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47690 AT2G47690 AT2G47690 AT3G62790
fragaria_vesca	FvH4_2g25680
malus_domestica	MD02G1095800.v1.1 MD03G1287600.v1.1
prunus_persica	Prupe.8G260800_v2.0.a1
pyrus_communis	pycom03g22770 pycom11g27130
rosa_chinensis	RchiOBHm_Chr6g0293941
rosa_roxburghii	Rroxscaffold_7G00173820
rosa_samantha	Rh6BG359400 Rh6CG366700 Rh6DG353000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	5 cut(s)	39, 81, 184, 200, 203
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	2 cut(s)	25, 86
AsuHPI	GGTGA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	26, 68, 190, 196, 212
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	2 cut(s)	25, 86
BcoDI	GTCTC	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	5 cut(s)	40, 82, 185, 201, 204
BlsI	GCNGC	5 cut(s)	41, 83, 186, 202, 205
Bme1390I	CCNGG	2 cut(s)	25, 86
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	25, 86
BpuMI	CCSGG	2 cut(s)	25, 86
BsaJI	CCNNGG	2 cut(s)	93, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	93, 213
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseRI	GAGGAG	2 cut(s)	98, 194
BseXI	GCAGC	5 cut(s)	26, 68, 190, 196, 212
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	9, 24, 85
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	93, 213
BssMI	GATC	1 cut(s)	235
BssT1I	CCWWGG	2 cut(s)	93, 213
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 209
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	23, 84
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	26, 68, 190, 196, 212
BsuRI	GGCC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	210
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	5 cut(s)	5, 12, 91, 203, 212
CviKI_1	RGCY	5 cut(s)	5, 12, 91, 203, 212
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	93, 213
Eco24I	GRGCYC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoT14I	CCWWGG	2 cut(s)	93, 213
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	93, 213
FaeI	CATG	1 cut(s)	76
FaiI	YATR	1 cut(s)	74
FatI	CATG	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	40, 82, 185, 201, 204
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	5 cut(s)	40, 82, 185, 201, 204
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	5 cut(s)	40, 82, 185, 201, 204
GsaI	CCCAGC	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	3 cut(s)	9, 24, 85
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	18, 163
HpaII	CCGG	3 cut(s)	9, 24, 85
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	2 cut(s)	58, 191
Hpy8I	GTNNAC	2 cut(s)	58, 191
HpyCH4V	TGCA	2 cut(s)	72, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 209
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	88, 181
LpnPI	CCDG	4 cut(s)	22, 37, 37, 98
Lsp1109I	GCAGC	5 cut(s)	26, 68, 190, 196, 212
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	7 cut(s)	109, 119, 134, 143, 153, 172, 211
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	3 cut(s)	9, 24, 85
MspR9I	CCNGG	2 cut(s)	25, 86
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	78, 209
NciI	CCSGG	2 cut(s)	25, 86
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 163
PfeI	GAWTC	2 cut(s)	18, 163
PkrI	GCNGC	5 cut(s)	41, 83, 186, 202, 205
PspFI	CCCAGC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	203
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	5 cut(s)	40, 82, 185, 201, 204
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	25, 86
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	2 cut(s)	126, 205
Sfr274I	CTCGAG	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	2 cut(s)	23, 84
StyI	CCWWGG	2 cut(s)	93, 213
TaqI	TCGA	3 cut(s)	57, 126, 166
TasI	AATT	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	18, 163
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	5 cut(s)	39, 81, 184, 200, 203
TspGWI	ACGGA	1 cut(s)	172
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.