AT3G62920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016138
Physical Location & Seq
Forward (+)
23260597 .. 23261297
701 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62920.1

Sequence Viewer

Length: 243 bp
ATGTCGATTTACAGGATCGCTAGAGCTTTACCCTTCTCCGGGATCTTAAGGCAGCTTGAGAAAGAAGCTGAAACTGTGATCAATGTTCTGCAACCTGGACCTTTGGGAATCATAGAGCACAAGTTCTCGGCTCAAGAGATTCGGGAAGCAAAAGCTACAGTTTCTAGAGCTGTTGATAGTTGGCGAAGACATTCTGAGGTCGAGCATGCAAATGGCCTTTTAAAAGATTACATTTACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.15

Weight (kDa)

9.15

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62920
fragaria_vesca FvH4_2g24970 FvH4_2g24970
malus_domestica MD03G1278400.v1.1 MD11G1300800.v1.1
prunus_persica Prupe.8G254700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0292931
rosa_multiflora Rmu_sc0001788.1_g000010
rosa_roxburghii Rroxscaffold_7G00174550
rosa_rugosa Rorug06G0231000
rosa_samantha Rh6AG344000 Rh6BG351400 Rh6CG358500 Rh6DG344200
rosa_wichuraiana Rw6G030030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 23, 50
AfiI CCNNNNNNNGG 2 cut(s) 38, 39
AflII CTTAAG 1 cut(s) 46
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 5 cut(s) 26, 55, 68, 155, 170
AluI AGCT 5 cut(s) 26, 55, 68, 155, 170
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 2 cut(s) 23, 50
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 40
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 96
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 1 cut(s) 40
BfaI CTAG 2 cut(s) 21, 165
BfmI CTRYAG 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 46
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 40, 96
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 40, 96
BpiI GAAGAC 1 cut(s) 193
BpuEI CTTGAG 2 cut(s) 77, 117
BpuMI CCSGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 39
BseBI CCWGG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 38, 39
BseMII CTCAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 38, 39
BsnI GGCC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 15, 42, 78
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 187
BspPI GGATC 2 cut(s) 23, 50
BspTI CTTAAG 1 cut(s) 46
BssMI GATC 3 cut(s) 15, 42, 78
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 76, 160
BstAFI CTTAAG 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 195
BstKTI GATC 3 cut(s) 18, 45, 81
BstMBI GATC 3 cut(s) 15, 42, 78
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 38, 94
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 98
CviAII CATG 1 cut(s) 206
CviJI RGCY 7 cut(s) 26, 55, 68, 131, 155, 170, 216
CviKI_1 RGCY 7 cut(s) 26, 55, 68, 131, 155, 170, 216
DdeI CTNAG 1 cut(s) 195
DpnI GATC 3 cut(s) 17, 44, 80
DpnII GATC 3 cut(s) 15, 42, 78
DraI TTTAAA 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 113, 207
FatI CATG 1 cut(s) 205
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 2 cut(s) 21, 165
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 39
Hin1II CATG 1 cut(s) 209
HinfI GANTC 2 cut(s) 108, 139
HpaII CCGG 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 134, 143, 165
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 76, 160
HpyCH4V TGCA 2 cut(s) 91, 209
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 3 cut(s) 15, 42, 78
LpnPI CCDG 3 cut(s) 52, 81, 108
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 2 cut(s) 21, 165
MalI GATC 3 cut(s) 17, 44, 80
MboI GATC 3 cut(s) 15, 42, 78
MboII GAAGA 1 cut(s) 198
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 120
MnlI CCTC 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 190
MseI TTAA 2 cut(s) 47, 221
MslI CAYNNNNRTG 1 cut(s) 210
MspCI CTTAAG 1 cut(s) 46
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 2 cut(s) 40, 96
MvaI CCWGG 1 cut(s) 96
NciI CCSGG 1 cut(s) 40
NdeII GATC 3 cut(s) 15, 42, 78
NlaIII CATG 1 cut(s) 209
NmeAIII GCCGAG 1 cut(s) 107
NspI RCATGY 1 cut(s) 209
PaeI GCATGC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 108, 139
PfoI TCCNGGA 1 cut(s) 38
PkrI GCNGC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 2 cut(s) 47, 221
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 3 cut(s) 15, 42, 78
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 40, 96
SduI GDGCHC 1 cut(s) 120
SetI ASST 8 cut(s) 28, 57, 70, 97, 103, 157, 172, 201
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 3 cut(s) 46, 56, 132
SmoI CTYRAG 3 cut(s) 46, 56, 132
SphI GCATGC 1 cut(s) 209
SspMI CTAG 2 cut(s) 21, 165
StyD4I CCNGG 2 cut(s) 38, 94
TaaI ACNGT 2 cut(s) 76, 160
TaqI TCGA 2 cut(s) 5, 201
TfiI GAWTC 2 cut(s) 108, 139
Tru1I TTAA 2 cut(s) 47, 221
Tru9I TTAA 2 cut(s) 47, 221
TseI GCWGC 1 cut(s) 52
Vha464I CTTAAG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 190
XspI CTAG 2 cut(s) 21, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.