MD11G1300800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016138
Physical Location & Seq
Reverse (-)
41694170 .. 41697466
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1300800.v1.1.491

Sequence Viewer

Length: 231 bp
ATGAGCAGGTCGTATTTTCCCTTCTCCAGAATCTTCAGGCAGCTGGAGCGAGAGATGGAAACTGTGGTGAAAGTACTGCAGCCTGGACCTTTAGGGATCATAGAACACAGGTTCTCTGCTGAGGAGATACGCAAGGCAAACGCTACGGTTCAGAGAGCAGTGGAAAACTGGCGACGGAGTGCAATCCTAGAGCAGACAAATCCTTTCTTGAAAGATTATATTCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

9.05

Weight (kDa)

9.98

Isoelectric Point (pI)

66.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62920
fragaria_vesca FvH4_2g24970 FvH4_2g24970
malus_domestica MD03G1278400.v1.1 MD11G1300800.v1.1
prunus_persica Prupe.8G254700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0292931
rosa_multiflora Rmu_sc0001788.1_g000010
rosa_roxburghii Rroxscaffold_7G00174550
rosa_rugosa Rorug06G0231000
rosa_samantha Rh6AG344000 Rh6BG351400 Rh6CG358500 Rh6DG344200
rosa_wichuraiana Rw6G030030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 19
AfaI GTAC 1 cut(s) 75
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AlwI GGATC 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 40, 79
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 86
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 52, 91
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 84
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 41, 80
BlsI GCNGC 2 cut(s) 42, 81
BmcAI AGTACT 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 84
BpmI CTGGAG 2 cut(s) 10, 65
Bpu10I CCTNAGC 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 52, 91
Bsp143I GATC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 81
BspPI GGATC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 173
BssMI GATC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 64, 148
BstDEI CTNAG 1 cut(s) 120
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 52, 91
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 74
CviJI RGCY 2 cut(s) 43, 82
CviKI_1 RGCY 2 cut(s) 43, 82
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 82
FaiI YATR 2 cut(s) 101, 219
Fnu4HI GCNGC 2 cut(s) 41, 80
Fsp4HI GCNGC 2 cut(s) 41, 80
FspBI CTAG 1 cut(s) 188
GluI GCNGC 2 cut(s) 41, 80
GsuI CTGGAG 2 cut(s) 10, 65
HinfI GANTC 1 cut(s) 30
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 153, 225
Hpy188III TCNNGA 2 cut(s) 27, 208
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 64, 148
HpyCH4V TGCA 2 cut(s) 79, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 120
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 7 cut(s) 22, 29, 40, 69, 94, 96, 154
Lsp1109I GCAGC 2 cut(s) 52, 91
MaeI CTAG 1 cut(s) 188
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 1 cut(s) 25
MnlI CCTC 1 cut(s) 115
MspA1I CMGCKG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 42, 81
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspPI GGNCC 1 cut(s) 86
PstI CTGCAG 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SatI GCNGC 2 cut(s) 41, 80
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 86
ScaI AGTACT 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 84
SetI ASST 4 cut(s) 11, 45, 91, 113
SfcI CTRYAG 1 cut(s) 77
SinI GGWCC 1 cut(s) 86
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 64, 148
TatI WGTACW 1 cut(s) 73
TfiI GAWTC 1 cut(s) 30
TscAI CASTG 1 cut(s) 165
TseI GCWGC 2 cut(s) 40, 79
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 86
XspI CTAG 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.