Prupe.8G254700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016138
Physical Location & Seq
Reverse (-)
21759740 .. 21761601
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G254700.1

Sequence Viewer

Length: 300 bp
ATGAAATGGGTCTCTCTGCGTGCAACCGTCGTACAACAGAAACGGCGCGTCTTTGAGGTGGGAGAGAAAGAGATGAGCAGGTCATTGCCCTTTTCCAGGCTCTTCAGGCAGCTGGAGCAAGAGATGGAAACTGTGGTAAAGGTATTGCAGCCTGGACCTTTAGGAATCATAGAGCACAAGTTCTCTGCTGAGGAGATACGCAAGGCAAATGCTACAGTTCAGAGGGCTGTGGAAACTTGGCGGCAGAATGCAATCCTAGAGCAGAGGAATCCACTCTTGAAAGATTATATTCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.7

Weight (kDa)

10.07

Isoelectric Point (pI)

65.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62920
fragaria_vesca FvH4_2g24970 FvH4_2g24970
malus_domestica MD03G1278400.v1.1 MD11G1300800.v1.1
prunus_persica Prupe.8G254700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0292931
rosa_multiflora Rmu_sc0001788.1_g000010
rosa_roxburghii Rroxscaffold_7G00174550
rosa_rugosa Rorug06G0231000
rosa_samantha Rh6AG344000 Rh6BG351400 Rh6CG358500 Rh6DG344200
rosa_wichuraiana Rw6G030030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 69
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 88
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 2 cut(s) 95, 151
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 109, 148
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 121, 160
BccI CCATC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 97, 153
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 3 cut(s) 110, 149, 242
BlsI GCNGC 3 cut(s) 111, 150, 243
Bme1390I CCNGG 2 cut(s) 97, 153
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmrFI CCNGG 2 cut(s) 97, 153
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 2 cut(s) 97, 153
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 121, 160
Bsh1236I CGCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 253
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 69
BspQI GCTCTTC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 97, 153
Bst4CI ACNGT 3 cut(s) 28, 133, 217
Bst6I CTCTTC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 189
BstENI CCTNNNNNAGG 1 cut(s) 94
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 106, 115
BstNI CCWGG 2 cut(s) 97, 153
BstSCI CCNGG 2 cut(s) 95, 151
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 121, 160
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 32
CviJI RGCY 4 cut(s) 100, 112, 151, 227
CviKI_1 RGCY 4 cut(s) 100, 112, 151, 227
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 95, 151
FaiI YATR 3 cut(s) 170, 288, 294
Fnu4HI GCNGC 3 cut(s) 110, 149, 242
Fsp4HI GCNGC 3 cut(s) 110, 149, 242
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 47
GluI GCNGC 3 cut(s) 110, 149, 242
GsuI CTGGAG 1 cut(s) 134
HgaI GACGC 1 cut(s) 37
HhaI GCGC 1 cut(s) 48
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 2 cut(s) 165, 268
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 3 cut(s) 28, 133, 217
HpyCH4V TGCA 3 cut(s) 23, 148, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 115
HpyF3I CTNAG 1 cut(s) 189
HspAI GCGC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 7 cut(s) 64, 82, 91, 98, 109, 138, 165
Lsp1109I GCAGC 2 cut(s) 121, 160
MaeI CTAG 1 cut(s) 257
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 177
MnlI CCTC 4 cut(s) 49, 184, 216, 258
MspA1I CMGCKG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 97, 153
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 2 cut(s) 97, 153
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 106, 115
PciSI GCTCTTC 1 cut(s) 107
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 165, 268
PkrI GCNGC 3 cut(s) 111, 150, 243
Psp6I CCWGG 2 cut(s) 95, 151
PspGI CCWGG 2 cut(s) 95, 151
PspPI GGNCC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 107
SatI GCNGC 3 cut(s) 110, 149, 242
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 97, 153
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 60, 83, 114, 144, 160
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 155
SsiI CCGC 1 cut(s) 241
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 95, 151
TaaI ACNGT 3 cut(s) 28, 133, 217
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 2 cut(s) 165, 268
TseI GCWGC 2 cut(s) 109, 148
TspDTI ATGAA 2 cut(s) 17, 281
VpaK11BI GGWCC 1 cut(s) 155
XagI CCTNNNNNAGG 1 cut(s) 94
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.