MD03G1278400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016138
Physical Location & Seq
Reverse (-)
36041857 .. 36045060
3204 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1278400.v1.1.491

Sequence Viewer

Length: 231 bp
ATGAGCAGGCCGGTGTTGCCCTTCTCCAGAATCTTCATGAAGCTAGAGCGAGAGATGGAAACTGTGGTGAAAGTACTGCAGCCTGGACCTTTAGGAATCATAGAGCACAAATTCTCTGGTGAAGAGATACACAAGGCAAATGCTACGGTTCAGAGGGCGGTGGAAAACTGGAGACGGAATGCAATCCTAGAGCAGACAAGTCCATTCTTAAAAGAATATATTCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.89

Weight (kDa)

9.6

Isoelectric Point (pI)

72.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62920
fragaria_vesca FvH4_2g24970 FvH4_2g24970
malus_domestica MD03G1278400.v1.1 MD11G1300800.v1.1
prunus_persica Prupe.8G254700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0292931
rosa_multiflora Rmu_sc0001788.1_g000010
rosa_roxburghii Rroxscaffold_7G00174550
rosa_rugosa Rorug06G0231000
rosa_samantha Rh6AG344000 Rh6BG351400 Rh6CG358500 Rh6DG344200
rosa_wichuraiana Rw6G030030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 1 cut(s) 75
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 166
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 79, 131
AvaII GGWCC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 2 cut(s) 44, 188
BfmI CTRYAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmcAI AGTACT 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 84
BpmI CTGGAG 2 cut(s) 10, 190
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 166
BsmBI CGTCTC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 108
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 10
BspHI TCATGA 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 64, 148
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 8
BstMAI GTCTC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 8
CciI TCATGA 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 74
CviAII CATG 1 cut(s) 37
CviJI RGCY 3 cut(s) 10, 43, 82
CviKI_1 RGCY 3 cut(s) 10, 43, 82
CviQI GTAC 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 82
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 1 cut(s) 40
FaiI YATR 3 cut(s) 38, 101, 219
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 2 cut(s) 44, 188
GluI GCNGC 1 cut(s) 80
GsuI CTGGAG 2 cut(s) 10, 190
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 11
Hin1II CATG 1 cut(s) 40
HinfI GANTC 2 cut(s) 30, 96
HpaII CCGG 1 cut(s) 11
HphI GGTGA 2 cut(s) 79, 131
Hpy188I TCNGA 2 cut(s) 153, 225
Hpy188III TCNNGA 2 cut(s) 27, 37
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 64, 148
HpyCH4V TGCA 2 cut(s) 79, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
Hsp92II CATG 1 cut(s) 40
LpnPI CCDG 6 cut(s) 24, 40, 69, 96, 102, 154
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 2 cut(s) 44, 188
MboII GAAGA 2 cut(s) 25, 134
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 110
MnlI CCTC 1 cut(s) 147
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 1 cut(s) 209
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 16
NlaIII CATG 1 cut(s) 40
PagI TCATGA 1 cut(s) 36
PctI GAATGC 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 2 cut(s) 30, 96
PkrI GCNGC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspPI GGNCC 1 cut(s) 86
PstI CTGCAG 1 cut(s) 81
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 86
ScaI AGTACT 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 108
SetI ASST 2 cut(s) 45, 91
SfcI CTRYAG 1 cut(s) 77
SinI GGWCC 1 cut(s) 86
Sse9I AATT 1 cut(s) 110
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 44, 188
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 64, 148
TasI AATT 1 cut(s) 110
TatI WGTACW 1 cut(s) 73
TfiI GAWTC 2 cut(s) 30, 96
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 25, 53
TspGWI ACGGA 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 2 cut(s) 44, 188
ZrmI AGTACT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.