AT4G04957

,transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0020972
Physical Location & Seq
Reverse (-)
2526806 .. 2527362
557 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04957.1

Sequence Viewer

Length: 237 bp
ATGTTAGTGACGGCGAAAAAGCACGAGATTTGGATGGATTTTGGTGAAGCGCCTATCAGATTTTCAATTCAAGAGTTCTCGGTTGCTATGTTTGCGGATCATGCATCCAGCCTAAACCCAATAGATGTCCCAAGGGAATTGATATGGGACCTACCTCGAAGAACTGTCTTCTTTGGTACCTCTATTCCTACGATATTCAAAGATAGTAAAGAAGCTGGAATCCAAGAAGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Perm-CXXC RRM_DME

Protein Analysis

78

Amino Acids

8.97

Weight (kDa)

5.56

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_DME PF15628 30 - 76 2.2e-13 RRM in Demeter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04957
pyrus_communis pycom09g17390 pycom12g01460
rosa_chinensis RchiOBHm_Chr6g0267411
rosa_roxburghii Rroxscaffold_7G00201390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 105
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 3 cut(s) 66, 71, 199
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
AlwI GGATC 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 176
BauI CACGAG 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 160
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 149, 178
BmsI GCATC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 39, 104
BshNI GGYRCC 1 cut(s) 176
BslFI GGGAC 2 cut(s) 113, 161
BsmFI GGGAC 2 cut(s) 113, 161
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 149, 178
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 1 cut(s) 97
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 166
BstF5I GGATG 2 cut(s) 39, 104
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 92, 101
BstV2I GAAGAC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 39, 104
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 177
CviAII CATG 1 cut(s) 101
CviJI RGCY 2 cut(s) 111, 215
CviKI_1 RGCY 2 cut(s) 111, 215
CviQI GTAC 1 cut(s) 177
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 1 cut(s) 104
FaiI YATR 3 cut(s) 89, 102, 145
FaqI GGGAC 2 cut(s) 113, 161
FatI CATG 1 cut(s) 100
FokI GGATG 2 cut(s) 46, 91
GlaI GCGC 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 53
HhaI GCGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HinfI GANTC 1 cut(s) 219
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 101
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 1 cut(s) 50
KpnI GGTACC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 2 cut(s) 121, 201
LweI GCATC 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 160, 171
MluCI AATT 2 cut(s) 66, 137
MnlI CCTC 2 cut(s) 165, 190
Mph1103I ATGCAT 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 92, 101
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 2 cut(s) 149, 178
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 106
PfeI GAWTC 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 149, 178
PspPI GGNCC 1 cut(s) 148
PspPPI RGGWCCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 148
SetI ASST 4 cut(s) 153, 157, 182, 217
SfaNI GCATC 1 cut(s) 113
SgeI CNNG 9 cut(s) 35, 37, 83, 91, 113, 120, 144, 168, 228
SinI GGWCC 1 cut(s) 148
Sse9I AATT 2 cut(s) 66, 137
SsiI CCGC 1 cut(s) 95
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 157, 232
TasI AATT 2 cut(s) 66, 137
TfiI GAWTC 1 cut(s) 219
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 148
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.