Permuted single zf-CXXC unit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G04957 |
| pyrus_communis | pycom09g17390 pycom12g01460 |
| rosa_chinensis | RchiOBHm_Chr6g0267411 |
| rosa_roxburghii | Rroxscaffold_7G00201390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 466 |
| AccII | CGCG | 2 cut(s) | 463, 472 |
| AciI | CCGC | 2 cut(s) | 463, 470 |
| AclWI | GGATC | 1 cut(s) | 26 |
| AcsI | RAATTY | 3 cut(s) | 79, 178, 405 |
| AfaI | GTAC | 1 cut(s) | 356 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 248 |
| AgsI | TTSAA | 2 cut(s) | 89, 263 |
| AjnI | CCWGG | 1 cut(s) | 64 |
| AluBI | AGCT | 2 cut(s) | 237, 337 |
| AluI | AGCT | 2 cut(s) | 237, 337 |
| Alw21I | GWGCWC | 1 cut(s) | 169 |
| Alw44I | GTGCAC | 1 cut(s) | 165 |
| AlwI | GGATC | 1 cut(s) | 26 |
| ApaLI | GTGCAC | 1 cut(s) | 165 |
| ApoI | RAATTY | 3 cut(s) | 79, 178, 405 |
| AseI | ATTAAT | 1 cut(s) | 479 |
| AsuHPI | GGTGA | 1 cut(s) | 80 |
| BaeGI | GKGCMC | 2 cut(s) | 169, 469 |
| BanI | GGYRCC | 1 cut(s) | 466 |
| Bbv12I | GWGCWC | 1 cut(s) | 169 |
| BciT130I | CCWGG | 1 cut(s) | 66 |
| BclI | TGATCA | 1 cut(s) | 451 |
| Bme1390I | CCNGG | 1 cut(s) | 66 |
| BmiI | GGNNCC | 3 cut(s) | 253, 364, 468 |
| BmrFI | CCNGG | 1 cut(s) | 66 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 186, 218 |
| BpmI | CTGGAG | 2 cut(s) | 48, 442 |
| BpuEI | CTTGAG | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 2 cut(s) | 193, 317 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 248 |
| Bse3DI | GCAATG | 1 cut(s) | 231 |
| BseBI | CCWGG | 1 cut(s) | 66 |
| BseDI | CCNNGG | 2 cut(s) | 193, 317 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 248 |
| BseMI | GCAATG | 1 cut(s) | 231 |
| BseSI | GKGCMC | 2 cut(s) | 169, 469 |
| BseYI | CCCAGC | 1 cut(s) | 499 |
| BsgI | GTGCAG | 1 cut(s) | 476 |
| Bsh1236I | CGCG | 2 cut(s) | 463, 472 |
| BshNI | GGYRCC | 1 cut(s) | 466 |
| BsiHKAI | GWGCWC | 1 cut(s) | 169 |
| BslFI | GGGAC | 1 cut(s) | 211 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 248 |
| BsmFI | GGGAC | 1 cut(s) | 211 |
| Bsp1286I | GDGCHC | 2 cut(s) | 169, 469 |
| Bsp143I | GATC | 2 cut(s) | 31, 451 |
| BspACI | CCGC | 2 cut(s) | 463, 470 |
| BspFNI | CGCG | 2 cut(s) | 463, 472 |
| BspLI | GGNNCC | 3 cut(s) | 253, 364, 468 |
| BspPI | GGATC | 1 cut(s) | 26 |
| BspT107I | GGYRCC | 1 cut(s) | 466 |
| BsrDI | GCAATG | 1 cut(s) | 231 |
| BssECI | CCNNGG | 2 cut(s) | 193, 317 |
| BssMI | GATC | 2 cut(s) | 31, 451 |
| BssT1I | CCWWGG | 1 cut(s) | 317 |
| Bst2UI | CCWGG | 1 cut(s) | 66 |
| Bst4CI | ACNGT | 3 cut(s) | 164, 190, 352 |
| BstC8I | GCNNGC | 2 cut(s) | 465, 505 |
| BstFNI | CGCG | 2 cut(s) | 463, 472 |
| BstKTI | GATC | 2 cut(s) | 34, 454 |
| BstMBI | GATC | 2 cut(s) | 31, 451 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 173, 469 |
| BstNI | CCWGG | 1 cut(s) | 66 |
| BstSCI | CCNGG | 1 cut(s) | 64 |
| BstSLI | GKGCMC | 2 cut(s) | 169, 469 |
| BstUI | CGCG | 2 cut(s) | 463, 472 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 324, 511 |
| BtsI | GCAGTG | 1 cut(s) | 412 |
| BtsIMutI | CAGTG | 1 cut(s) | 412 |
| Cac8I | GCNNGC | 2 cut(s) | 465, 505 |
| CseI | GACGC | 2 cut(s) | 461, 469 |
| Csp6I | GTAC | 1 cut(s) | 355 |
| CviAII | CATG | 4 cut(s) | 36, 156, 213, 287 |
| CviJI | RGCY | 5 cut(s) | 53, 237, 323, 337, 503 |
| CviKI_1 | RGCY | 5 cut(s) | 53, 237, 323, 337, 503 |
| CviQI | GTAC | 1 cut(s) | 355 |
| DpnI | GATC | 2 cut(s) | 33, 453 |
| DpnII | GATC | 2 cut(s) | 31, 451 |
| DraI | TTTAAA | 1 cut(s) | 385 |
| Eco130I | CCWWGG | 1 cut(s) | 317 |
| EcoRII | CCWGG | 1 cut(s) | 64 |
| EcoT14I | CCWWGG | 1 cut(s) | 317 |
| ErhI | CCWWGG | 1 cut(s) | 317 |
| FaeI | CATG | 4 cut(s) | 39, 159, 216, 290 |
| FaiI | YATR | 8 cut(s) | 9, 11, 37, 143, 157, 214, 288, 340 |
| FaqI | GGGAC | 1 cut(s) | 211 |
| FatI | CATG | 4 cut(s) | 35, 155, 212, 286 |
| FauI | CCCGC | 1 cut(s) | 456 |
| FauNDI | CATATG | 1 cut(s) | 9 |
| FbaI | TGATCA | 1 cut(s) | 451 |
| GsaI | CCCAGC | 1 cut(s) | 503 |
| GsuI | CTGGAG | 2 cut(s) | 48, 442 |
| HgaI | GACGC | 2 cut(s) | 461, 469 |
| Hin1II | CATG | 4 cut(s) | 39, 159, 216, 290 |
| HinfI | GANTC | 3 cut(s) | 61, 199, 290 |
| HphI | GGTGA | 1 cut(s) | 80 |
| Hpy166II | GTNNAC | 2 cut(s) | 167, 355 |
| Hpy188I | TCNGA | 3 cut(s) | 194, 362, 518 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 205, 421 |
| Hpy8I | GTNNAC | 2 cut(s) | 167, 355 |
| HpyAV | CCTTC | 1 cut(s) | 56 |
| HpyCH4III | ACNGT | 3 cut(s) | 164, 190, 352 |
| HpyCH4V | TGCA | 5 cut(s) | 7, 39, 159, 167, 493 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 173, 469 |
| Hsp92II | CATG | 4 cut(s) | 39, 159, 216, 290 |
| Ksp22I | TGATCA | 1 cut(s) | 451 |
| Kzo9I | GATC | 2 cut(s) | 31, 451 |
| LmnI | GCTCC | 1 cut(s) | 234 |
| MaeIII | GTNAC | 1 cut(s) | 134 |
| MalI | GATC | 2 cut(s) | 33, 453 |
| MboI | GATC | 2 cut(s) | 31, 451 |
| MfeI | CAATTG | 1 cut(s) | 306 |
| MhlI | GDGCHC | 2 cut(s) | 169, 469 |
| MluCI | AATT | 6 cut(s) | 40, 79, 128, 178, 306, 405 |
| MlyI | GAGTC | 2 cut(s) | 55, 193 |
| MnlI | CCTC | 7 cut(s) | 188, 224, 265, 376, 419, 435, 529 |
| MseI | TTAA | 5 cut(s) | 246, 267, 300, 384, 479 |
| MspR9I | CCNGG | 1 cut(s) | 66 |
| MunI | CAATTG | 1 cut(s) | 306 |
| MvaI | CCWGG | 1 cut(s) | 66 |
| MvnI | CGCG | 2 cut(s) | 463, 472 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 173, 469 |
| NdeI | CATATG | 1 cut(s) | 9 |
| NdeII | GATC | 2 cut(s) | 31, 451 |
| NlaIII | CATG | 4 cut(s) | 39, 159, 216, 290 |
| NlaIV | GGNNCC | 3 cut(s) | 253, 364, 468 |
| NmuCI | GTSAC | 1 cut(s) | 134 |
| PfeI | GAWTC | 1 cut(s) | 290 |
| PleI | GAGTC | 2 cut(s) | 55, 193 |
| PpsI | GAGTC | 2 cut(s) | 55, 193 |
| PshBI | ATTAAT | 1 cut(s) | 479 |
| Psp6I | CCWGG | 1 cut(s) | 64 |
| PspFI | CCCAGC | 1 cut(s) | 499 |
| PspGI | CCWGG | 1 cut(s) | 64 |
| PspN4I | GGNNCC | 3 cut(s) | 253, 364, 468 |
| RsaI | GTAC | 1 cut(s) | 356 |
| RsaNI | GTAC | 1 cut(s) | 355 |
| SaqAI | TTAA | 5 cut(s) | 246, 267, 300, 384, 479 |
| Sau3AI | GATC | 2 cut(s) | 31, 451 |
| SchI | GAGTC | 2 cut(s) | 55, 193 |
| ScrFI | CCNGG | 1 cut(s) | 66 |
| SduI | GDGCHC | 2 cut(s) | 169, 469 |
| SetI | ASST | 9 cut(s) | 28, 48, 70, 107, 239, 257, 276, 339, 368 |
| SmlI | CTYRAG | 1 cut(s) | 114 |
| SmoI | CTYRAG | 1 cut(s) | 114 |
| Sse9I | AATT | 6 cut(s) | 40, 79, 128, 178, 306, 405 |
| SsiI | CCGC | 2 cut(s) | 463, 470 |
| SspI | AATATT | 1 cut(s) | 381 |
| StyD4I | CCNGG | 1 cut(s) | 64 |
| StyI | CCWWGG | 1 cut(s) | 317 |
| TaaI | ACNGT | 3 cut(s) | 164, 190, 352 |
| TaqI | TCGA | 3 cut(s) | 293, 368, 395 |
| TasI | AATT | 6 cut(s) | 40, 79, 128, 178, 306, 405 |
| TatI | WGTACW | 1 cut(s) | 354 |
| TfiI | GAWTC | 1 cut(s) | 290 |
| Tru1I | TTAA | 5 cut(s) | 246, 267, 300, 384, 479 |
| Tru9I | TTAA | 5 cut(s) | 246, 267, 300, 384, 479 |
| TscAI | CASTG | 1 cut(s) | 419 |
| TseFI | GTSAC | 1 cut(s) | 134 |
| Tsp45I | GTSAC | 1 cut(s) | 134 |
| TspGWI | ACGGA | 1 cut(s) | 264 |
| TspRI | CASTG | 1 cut(s) | 419 |
| VneI | GTGCAC | 1 cut(s) | 165 |
| VspI | ATTAAT | 1 cut(s) | 479 |
| XapI | RAATTY | 3 cut(s) | 79, 178, 405 |