Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0020972

Physical Location & Seq

Genomic Coordinates Forward (+)

49044839 .. 49045832

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCAGATGTTTGCAGATCATGCTTTTAGTGTCAACCCAATTGATGTTCCAAGGGGATGGATATGGGATTTACCAAGACGACCTGTGTACTTTGGAACTTCTGTAATATCAATATTCAGAGGTCTATCAACAGAGGGGATCCAGTACTGCTTTTGGAGAGGATATGTTTGTGTAGGGGGCTTTGATAGAAGTACAAGAGTGCCAAAACCCTTAATCACAAGATTGCACTTTCCTCAAAGCAAGATGACGAAGGCCAAAAATGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

89

Amino Acids

10.34

Weight (kDa)

9.69

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_DME	PF15628	3 - 77	2.8e-29	RRM in Demeter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0020972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04957
pyrus_communis	pycom09g17390 pycom12g01460
rosa_chinensis	RchiOBHm_Chr6g0267411
rosa_roxburghii	Rroxscaffold_7G00201390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	133, 146
AfaI	GTAC	3 cut(s)	89, 146, 193
AlwI	GGATC	2 cut(s)	133, 146
AoxI	GGCC	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	138
BccI	CCATC	1 cut(s)	51
BmcAI	AGTACT	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	16, 138
BspANI	GGCC	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	133, 146
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	16, 138
BssT1I	CCWWGG	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	19, 141
BstMBI	GATC	2 cut(s)	16, 138
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	88, 145, 192
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	2 cut(s)	180, 254
CviKI_1	RGCY	2 cut(s)	180, 254
CviQI	GTAC	3 cut(s)	88, 145, 192
DpnI	GATC	2 cut(s)	18, 140
DpnII	GATC	2 cut(s)	16, 138
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	21, 64, 165
FatI	CATG	1 cut(s)	19
FokI	GGATG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	34, 88
Hpy188I	TCNGA	1 cut(s)	119
Hpy8I	GTNNAC	2 cut(s)	34, 88
HpyAV	CCTTC	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	4, 14, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	16, 138
LpnPI	CCDG	2 cut(s)	96, 155
MalI	GATC	2 cut(s)	18, 140
MboI	GATC	2 cut(s)	16, 138
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	1 cut(s)	138
MluCI	AATT	1 cut(s)	39
MnlI	CCTC	4 cut(s)	113, 127, 152, 243
MseI	TTAA	1 cut(s)	212
MunI	CAATTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	2 cut(s)	16, 138
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	3 cut(s)	89, 146, 193
RsaNI	GTAC	3 cut(s)	88, 145, 192
SaqAI	TTAA	1 cut(s)	212
Sau3AI	GATC	2 cut(s)	16, 138
ScaI	AGTACT	1 cut(s)	146
SetI	ASST	2 cut(s)	85, 124
SgeI	CNNG	8 cut(s)	32, 63, 87, 95, 154, 207, 231, 253
Sse9I	AATT	1 cut(s)	39
SspI	AATATT	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	50
TasI	AATT	1 cut(s)	39
TatI	WGTACW	3 cut(s)	87, 144, 191
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.