AT4G08210

pentatricopeptide

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
5183110 .. 5185906
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08210.1

Sequence Viewer

Length: 2061 bp
ATGGTTATGGACTTGAAGCTTATAGCAGCAGGATTACGTCATTGTGGGAAAGTACAAGCCTTTAAGCGTGGAGAATCAATTCAAGCTCATGTAATCAAGCAAGGGATCTCTCAAAATGTGTTTATAGCGAATAACGTGATCTCAATGTATGTGGATTTCAGGTTGTTGAGTGATGCACATAAAGTGTTCGATGAAATGTCTGAGAGAAATATTGTAACTTGGACAACGATGGTTTCTGGGTATACGAGTGATGGAAAACCCAATAAAGCTATTGAGTTATACAGAAGAATGTTAGACTCCGAAGAAGAAGCGGCGAACGAGTTTATGTATTCTGCGGTTTTGAAAGCTTGTGGGTTAGTGGGTGATATTCAGCTGGGGATTTTGGTTTATGAAAGAATTGGTAAAGAGAATTTGAGAGGTGATGTTGTTTTGATGAATAGTGTTGTTGATATGTATGTTAAGAATGGGAGACTTATCGAAGCTAATAGCAGTTTTAAGGAGATTTTACGGCCTAGTTCGACTTCGTGGAACACTCTTATTTCTGGTTATTGTAAAGCTGGTTTGATGGATGAAGCGGTTACTTTGTTCCATCGAATGCCGCAGCCAAATGTCGTGTCTTGGAACTGTTTGATATCGGGATTTGTCGATAAGGGTAGTCCTCGTGCGTTGGAGTTTTTAGTTAGGATGCAGAGAGAAGGACTTGTGTTAGACGGTTTTGCTTTACCATGTGGTCTTAAAGCTTGTAGTTTTGGTGGCTTATTAACAATGGGTAAACAGCTGCATTGTTGTGTCGTAAAGTCGGGTCTAGAGTCTAGCCCGTTCGCAATATCTGCTCTTATTGATATGTACTCGAACTGTGGCTCTCTAATATATGCAGCTGATGTTTTTCATCAGGAAAAACTGGCCGTTAATAGTAGTGTCGCGGTTTGGAATTCTATGCTCTCTGGATTTTTGATAAATGAGGAGAATGAAGCAGCATTATGGCTGCTTTTGCAGATATATCAGTCAGATTTGTGTTTTGATTCCTACACTCTAAGTGGTGCCTTAAAGATATGTATCAACTATGTCAACTTAAGACTCGGGCTTCAAGTACATAGTTTAGTTGTAGTAAGTGGTTATGAGTTGGATTACATCGTAGGAAGTATTCTTGTTGATTTACATGCAAATGTTGGGAATATACAAGATGCACATAAACTGTTTCATAGGCTTCCAAATAAAGATATCATCGCTTTCTCTGGCTTGATACGAGGCTGTGTGAAATCAGGGTTCAATTCTTTAGCATTTTATCTGTTCAGGGAATTAATCAAGTTGGGACTCGATGCTGACCAGTTCATCGTCTCAAATATTCTTAAAGTTTGTTCAAGTTTAGCATCTCTTGGATGGGGTAAGCAAATTCATGGGTTGTGTATAAAGAAAGGTTATGAATCAGAACCTGTCACAGCGACAGCACTAGTAGATATGTATGTAAAATGTGGTGAGATAGATAATGGTGTAGTGTTGTTTGATGGTATGTTAGAAAGAGATGTTGTCTCTTGGACAGGGATAATTGTTGGATTCGGACAAAACGGACGAGTCGAAGAAGCGTTTCGGTATTTCCACAAGATGATAAATATTGGAATTGAACCAAATAAGGTAACTTTTTTGGGGCTTCTTTCTGCTTGCCGACATTCTGGACTACTTGAAGAAGCAAGATCAACCCTCGAAACGATGAAATCTGAATATGGTCTTGAACCGTATCTAGAGCATTATTATTGTGTAGTTGATCTTCTTGGTCAAGCCGGGCTGTTCCAAGAGGCTAACGAATTGATAAATAAAATGCCGTTGGAGCCCGACAAAACAATATGGACGTCTCTGCTCACTGCTTGCGGAACTCACAAGAATGCCGGACTGGTTACTGTAATTGCTGAGAAATTACTCAAGGGGTTTCCGGATGATCCATCGGTTTATACATCTCTTTCGAATGCTTATGCTACGTTAGGCATGTGGGATCAGTTAAGTAAAGTGAGAGAAGCTGCTAAGAAGCTAGGGGCAAAAGAATCTGGAATGAGTTGGATAATTTAG

Protein Analysis

686

Amino Acids

75.82

Weight (kDa)

5.97

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 69 - 117 1e-06 PPR repeat family
PPR PF01535 72 - 99 6e-07 PPR repeat
PPR_1 PF12854 170 - 199 2e-10 PPR repeat
PPR_2 PF13041 171 - 200 1.7e-07 PPR repeat family
PPR PF01535 175 - 200 1.3e-09 PPR repeat
PPR_2 PF13041 507 - 554 1.4e-10 PPR repeat family
PPR PF01535 510 - 540 2.8e-06 PPR repeat
E_motif PF20431 635 - 685 5.7e-06 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08210
fragaria_vesca FvH4_2g26350
malus_domestica MD08G1169600.v1.1
prunus_persica Prupe.1G503500_v2.0.a1 Prupe.1G503500_v2.0.a1
pyrus_communis pycom08g14510
rosa_chinensis RchiOBHm_Chr6g0294931
rosa_laevigata RLG00000011826
rosa_multiflora Rmu_sc0002700.1_g000046
rosa_roxburghii Rroxscaffold_7G00172820
rosa_rugosa Rorug06G0248400
rosa_samantha Rh6AG361600 Rh6BG369100 Rh6CG375600 Rh6DG362100
rosa_wichuraiana Rw6G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1850
AccB1I GGYRCC 1 cut(s) 1040
AccI GTMKAC 1 cut(s) 242
AccII CGCG 1 cut(s) 923
AccIII TCCGGA 1 cut(s) 1927
AciI CCGC 6 cut(s) 311, 335, 575, 599, 923, 1866
AclWI GGATC 3 cut(s) 113, 1928, 1995
AcoI YGGCCR 1 cut(s) 903
AcsI RAATTY 3 cut(s) 409, 931, 1392
AcyI GRCGYC 1 cut(s) 1847
AfaI GTAC 3 cut(s) 54, 848, 1092
AflII CTTAAG 1 cut(s) 1072
AgsI TTSAA 9 cut(s) 16, 83, 343, 1088, 1270, 1362, 1622, 1682, 1730
AhlI ACTAGT 1 cut(s) 1450
Alw26I GTCTC 4 cut(s) 463, 1342, 1534, 1854
AlwI GGATC 3 cut(s) 113, 1928, 1995
AlwNI CAGNNNCTG 1 cut(s) 1433
Ama87I CYCGRG 1 cut(s) 1079
Aor13HI TCCGGA 1 cut(s) 1927
AoxI GGCC 2 cut(s) 509, 903
ApeKI GCWGC 7 cut(s) 26, 601, 778, 875, 974, 985, 2012
ApoI RAATTY 3 cut(s) 409, 931, 1392
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AseI ATTAAT 1 cut(s) 1301
Asp700I GAANNNNTTC 2 cut(s) 78, 1584
AsuC2I CCSGG 1 cut(s) 1780
AsuHPI GGTGA 3 cut(s) 374, 431, 1487
AsuII TTCGAA 1 cut(s) 1958
AvaI CYCGRG 1 cut(s) 1079
BanI GGYRCC 1 cut(s) 1040
BanII GRGCYC 1 cut(s) 1830
BarI GAAGNNNNNNTAC 2 cut(s) 1749, 1781
BauI CACGAG 1 cut(s) 660
BbvI GCAGC 7 cut(s) 38, 613, 765, 887, 972, 986, 1999
BccI CCATC 7 cut(s) 223, 245, 559, 597, 1374, 1499, 1945
BceAI ACGGC 3 cut(s) 524, 890, 1804
BcnI CCSGG 1 cut(s) 1780
BcoDI GTCTC 4 cut(s) 463, 1342, 1534, 1854
BcuI ACTAGT 1 cut(s) 1450
BfaI CTAG 6 cut(s) 513, 806, 813, 1451, 1739, 2024
BfrI CTTAAG 1 cut(s) 1072
BisI GCNGC 9 cut(s) 27, 312, 599, 602, 779, 876, 975, 986, 2013
BlsI GCNGC 9 cut(s) 28, 313, 600, 603, 780, 877, 976, 987, 2014
Bme1390I CCNGG 1 cut(s) 1780
BmeT110I CYCGRG 1 cut(s) 1079
BmiI GGNNCC 2 cut(s) 1042, 1827
BmrFI CCNGG 1 cut(s) 1780
BmsI GCATC 5 cut(s) 163, 675, 1174, 1309, 1379
Bpu14I TTCGAA 1 cut(s) 1958
BpuEI CTTGAG 1 cut(s) 1901
BpuMI CCSGG 1 cut(s) 1780
BsaBI GATNNNNATC 1 cut(s) 1055
BsaHI GRCGYC 1 cut(s) 1847
BsaWI WCCGGW 1 cut(s) 1927
Bse1I ACTGG 3 cut(s) 906, 1327, 1893
Bse8I GATNNNNATC 1 cut(s) 1055
BseAI TCCGGA 1 cut(s) 1927
BseGI GGATG 4 cut(s) 574, 690, 1385, 1936
BseJI GATNNNNATC 1 cut(s) 1055
BseMII CTCAG 2 cut(s) 192, 1896
BseNI ACTGG 3 cut(s) 906, 1327, 1893
BseRI GAGGAG 1 cut(s) 977
BseXI GCAGC 7 cut(s) 38, 613, 765, 887, 972, 986, 1999
BseYI CCCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 923
BshFI GGCC 2 cut(s) 511, 905
BshNI GGYRCC 1 cut(s) 1040
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 3 cut(s) 1779, 1884, 1928
BslFI GGGAC 1 cut(s) 1326
BsmAI GTCTC 4 cut(s) 463, 1342, 1534, 1854
BsmBI CGTCTC 2 cut(s) 1342, 1854
BsmFI GGGAC 1 cut(s) 1326
BsmI GAATGC 3 cut(s) 600, 1885, 1966
BsnI GGCC 2 cut(s) 511, 905
BsoBI CYCGRG 1 cut(s) 1079
Bsp119I TTCGAA 1 cut(s) 1958
Bsp1286I GDGCHC 1 cut(s) 1830
Bsp13I TCCGGA 1 cut(s) 1927
Bsp143I GATC 6 cut(s) 105, 138, 1691, 1762, 1933, 1987
BspACI CCGC 6 cut(s) 311, 335, 575, 599, 923, 1866
BspANI GGCC 2 cut(s) 511, 905
BspCNI CTCAG 2 cut(s) 193, 1897
BspEI TCCGGA 1 cut(s) 1927
BspFNI CGCG 1 cut(s) 923
BspLI GGNNCC 2 cut(s) 1042, 1827
BspPI GGATC 3 cut(s) 113, 1928, 1995
BspT104I TTCGAA 1 cut(s) 1958
BspT107I GGYRCC 1 cut(s) 1040
BspTI CTTAAG 1 cut(s) 1072
BsrI ACTGG 3 cut(s) 906, 1327, 1893
BssMI GATC 6 cut(s) 105, 138, 1691, 1762, 1933, 1987
BssNAI GTATAC 1 cut(s) 243
BssNI GRCGYC 1 cut(s) 1847
BssSI CACGAG 1 cut(s) 660
Bst1107I GTATAC 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 660
Bst4CI ACNGT 6 cut(s) 626, 713, 857, 1197, 1734, 1897
BstACI GRCGYC 1 cut(s) 1847
BstAFI CTTAAG 1 cut(s) 1072
BstAPI GCANNNNNTGC 1 cut(s) 830
BstBI TTCGAA 1 cut(s) 1958
BstC8I GCNNGC 2 cut(s) 1660, 1864
BstDEI CTNAG 4 cut(s) 201, 1034, 1905, 2016
BstF5I GGATG 4 cut(s) 574, 690, 1385, 1936
BstFNI CGCG 1 cut(s) 923
BstKTI GATC 6 cut(s) 108, 141, 1694, 1765, 1936, 1990
BstMAI GTCTC 4 cut(s) 463, 1342, 1534, 1854
BstMBI GATC 6 cut(s) 105, 138, 1691, 1762, 1933, 1987
BstMWI GCNNNNNNNGC 3 cut(s) 830, 991, 1825
BstNSI RCATGY 2 cut(s) 1163, 1984
BstSCI CCNGG 1 cut(s) 1778
BstUI CGCG 1 cut(s) 923
BstV1I GCAGC 7 cut(s) 38, 613, 765, 887, 972, 986, 1999
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BstZ17I GTATAC 1 cut(s) 243
BsuRI GGCC 2 cut(s) 511, 905
BtgZI GCGATG 1 cut(s) 1210
BtsCI GGATG 4 cut(s) 574, 690, 1385, 1936
BtsI GCAGTG 1 cut(s) 1857
BtsIMutI CAGTG 1 cut(s) 1857
Cac8I GCNNGC 2 cut(s) 1660, 1864
CaiI CAGNNNCTG 1 cut(s) 1433
Csp6I GTAC 3 cut(s) 53, 847, 1091
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 5 cut(s) 89, 726, 1160, 1397, 1981
CviQI GTAC 3 cut(s) 53, 847, 1091
DdeI CTNAG 4 cut(s) 201, 1034, 1905, 2016
DpnI GATC 6 cut(s) 107, 140, 1693, 1764, 1935, 1989
DpnII GATC 6 cut(s) 105, 138, 1691, 1762, 1933, 1987
EaeI YGGCCR 1 cut(s) 903
Eco24I GRGCYC 1 cut(s) 1830
Eco32I GATATC 2 cut(s) 633, 1222
Eco88I CYCGRG 1 cut(s) 1079
EcoRI GAATTC 1 cut(s) 931
EcoRV GATATC 2 cut(s) 633, 1222
EcoT38I GRGCYC 1 cut(s) 1830
Esp3I CGTCTC 2 cut(s) 1342, 1854
FaeI CATG 5 cut(s) 92, 729, 1163, 1400, 1984
FaqI GGGAC 1 cut(s) 1326
FatI CATG 5 cut(s) 88, 725, 1159, 1396, 1980
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 9 cut(s) 27, 312, 599, 602, 779, 876, 975, 986, 2013
FokI GGATG 4 cut(s) 581, 697, 1392, 1943
FriOI GRGCYC 1 cut(s) 1830
Fsp4HI GCNGC 9 cut(s) 27, 312, 599, 602, 779, 876, 975, 986, 2013
FspBI CTAG 6 cut(s) 513, 806, 813, 1451, 1739, 2024
GluI GCNGC 9 cut(s) 27, 312, 599, 602, 779, 876, 975, 986, 2013
GsaI CCCAGC 1 cut(s) 377
HaeIII GGCC 2 cut(s) 511, 905
HapII CCGG 3 cut(s) 1779, 1884, 1928
Hin1I GRCGYC 1 cut(s) 1847
Hin1II CATG 5 cut(s) 92, 729, 1163, 1400, 1984
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HindIII AAGCTT 3 cut(s) 17, 345, 738
HpaII CCGG 3 cut(s) 1779, 1884, 1928
HphI GGTGA 3 cut(s) 374, 431, 1487
Hpy166II GTNNAC 3 cut(s) 243, 773, 1069
Hpy188I TCNGA 6 cut(s) 202, 301, 1009, 1429, 1559, 1717
Hpy188III TCNNGA 9 cut(s) 636, 806, 893, 945, 1671, 1727, 1739, 1928, 2040
Hpy8I GTNNAC 3 cut(s) 243, 773, 1069
HpyAV CCTTC 1 cut(s) 689
HpyCH4III ACNGT 6 cut(s) 626, 713, 857, 1197, 1734, 1897
HpyCH4IV ACGT 4 cut(s) 37, 135, 1847, 1973
HpyCH4V TGCA 7 cut(s) 176, 688, 781, 875, 994, 1163, 1187
HpyF10VI GCNNNNNNNGC 3 cut(s) 830, 991, 1825
HpyF3I CTNAG 4 cut(s) 201, 1034, 1905, 2016
HpySE526I ACGT 4 cut(s) 37, 135, 1847, 1973
Hsp92I GRCGYC 1 cut(s) 1847
Hsp92II CATG 5 cut(s) 92, 729, 1163, 1400, 1984
Kpn2I TCCGGA 1 cut(s) 1927
Kzo9I GATC 6 cut(s) 105, 138, 1691, 1762, 1933, 1987
LmnI GCTCC 1 cut(s) 1825
Lsp1109I GCAGC 7 cut(s) 38, 613, 765, 887, 972, 986, 1999
LweI GCATC 5 cut(s) 163, 675, 1174, 1309, 1379
MaeI CTAG 6 cut(s) 513, 806, 813, 1451, 1739, 2024
MaeII ACGT 4 cut(s) 37, 135, 1847, 1973
MaeIII GTNAC 5 cut(s) 214, 577, 1435, 1633, 1891
MalI GATC 6 cut(s) 107, 140, 1693, 1764, 1935, 1989
MboI GATC 6 cut(s) 105, 138, 1691, 1762, 1933, 1987
MboII GAAGA 6 cut(s) 297, 314, 317, 1589, 1694, 1757
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 1830
MlyI GAGTC 5 cut(s) 290, 818, 1071, 1308, 1581
MmeI TCCRAC 5 cut(s) 648, 1104, 1531, 1803, 2030
MnlI CCTC 6 cut(s) 410, 669, 955, 1241, 1709, 1786
MroI TCCGGA 1 cut(s) 1927
MroXI GAANNNNTTC 2 cut(s) 78, 1584
MslI CAYNNNNRTG 3 cut(s) 786, 1164, 1878
MspA1I CMGCKG 3 cut(s) 373, 778, 878
MspCI CTTAAG 1 cut(s) 1072
MspI CCGG 3 cut(s) 1779, 1884, 1928
MspR9I CCNGG 1 cut(s) 1780
Mva1269I GAATGC 3 cut(s) 600, 1885, 1966
MvnI CGCG 1 cut(s) 923
MwoI GCNNNNNNNGC 3 cut(s) 830, 991, 1825
NciI CCSGG 1 cut(s) 1780
NdeII GATC 6 cut(s) 105, 138, 1691, 1762, 1933, 1987
NlaIII CATG 5 cut(s) 92, 729, 1163, 1400, 1984
NlaIV GGNNCC 2 cut(s) 1042, 1827
NmuCI GTSAC 1 cut(s) 1435
NspI RCATGY 2 cut(s) 1163, 1984
NspV TTCGAA 1 cut(s) 1958
PcsI WCGNNNNNNNCGW 1 cut(s) 1572
PctI GAATGC 3 cut(s) 600, 1885, 1966
PdmI GAANNNNTTC 2 cut(s) 78, 1584
PfeI GAWTC 5 cut(s) 74, 1022, 1424, 1554, 2036
PkrI GCNGC 9 cut(s) 28, 313, 600, 603, 780, 877, 976, 987, 2014
PleI GAGTC 5 cut(s) 290, 817, 1071, 1308, 1580
PpsI GAGTC 5 cut(s) 290, 817, 1071, 1308, 1580
PshBI ATTAAT 1 cut(s) 1301
PspFI CCCAGC 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 1042, 1827
PstNI CAGNNNCTG 1 cut(s) 1433
PsuI RGATCY 1 cut(s) 105
PvuII CAGCTG 3 cut(s) 373, 778, 878
RsaI GTAC 3 cut(s) 54, 848, 1092
RsaNI GTAC 3 cut(s) 53, 847, 1091
RseI CAYNNNNRTG 3 cut(s) 786, 1164, 1878
SatI GCNGC 9 cut(s) 27, 312, 599, 602, 779, 876, 975, 986, 2013
Sau3AI GATC 6 cut(s) 105, 138, 1691, 1762, 1933, 1987
SchI GAGTC 5 cut(s) 290, 818, 1071, 1308, 1581
ScrFI CCNGG 1 cut(s) 1780
SduI GDGCHC 1 cut(s) 1830
SfaNI GCATC 5 cut(s) 163, 675, 1174, 1309, 1379
SfuI TTCGAA 1 cut(s) 1958
SmiMI CAYNNNNRTG 3 cut(s) 786, 1164, 1878
SmlI CTYRAG 2 cut(s) 1072, 1916
SmoI CTYRAG 2 cut(s) 1072, 1916
SpeI ACTAGT 1 cut(s) 1450
SsiI CCGC 6 cut(s) 311, 335, 575, 599, 923, 1866
SspI AATATT 3 cut(s) 211, 1345, 1612
SspMI CTAG 6 cut(s) 513, 806, 813, 1451, 1739, 2024
StyD4I CCNGG 1 cut(s) 1778
TaaI ACNGT 6 cut(s) 626, 713, 857, 1197, 1734, 1897
TaiI ACGT 4 cut(s) 40, 138, 1850, 1976
TatI WGTACW 3 cut(s) 52, 846, 1090
TauI GCSGC 2 cut(s) 314, 601
TfiI GAWTC 5 cut(s) 74, 1022, 1424, 1554, 2036
TscAI CASTG 1 cut(s) 1864
TseFI GTSAC 1 cut(s) 1435
TseI GCWGC 7 cut(s) 26, 601, 778, 875, 974, 985, 2012
Tsp45I GTSAC 1 cut(s) 1435
TspGWI ACGGA 1 cut(s) 1581
TspRI CASTG 1 cut(s) 1864
Vha464I CTTAAG 1 cut(s) 1072
VspI ATTAAT 1 cut(s) 1301
XapI RAATTY 3 cut(s) 409, 931, 1392
XbaI TCTAGA 2 cut(s) 805, 1738
XceI RCATGY 2 cut(s) 1163, 1984
XmiI GTMKAC 1 cut(s) 242
XmnI GAANNNNTTC 2 cut(s) 78, 1584
XspI CTAG 6 cut(s) 513, 806, 813, 1451, 1739, 2024
ZraI GACGTC 1 cut(s) 1848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.