Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015471

Physical Location & Seq

Genomic Coordinates Forward (+)

20317432 .. 20319513

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1169600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGGAATTCGCGTATCTGAACCGAATAGCTACCGCTCTCCGCCACTGTGGCGGCCGATCTCAGGTCAATCACGGCAGAGCATTTCACTCCCAACTAATCAAGCTCGGCGCTTTGAATGACGTTTTTCTCGCTAACAATCTGATATCTTTGTACGTCGCGTTTCCTTGTTTGAGTGACGCGCGGAAGGTGTTTGATGGAATGCCTGACAGGAACGTTGTGACATGGACGACAATGGTTTGTGGATATACTAATTGCGGAAAACCTGATAAGGCAGTGGGATTGTACAAGCGGATGTTGGAGTCTGAATCGGAGACGCCGAACGGGTTCATGTACTCTGCGGTGCTAAAAGCTTGTGGTTTGGTGGGTGACCTGAGAACGGGTAAATTGATTCATGAGAGGATATGTAGTGAGAGGTTGGAGTTTGACACTGTTTTGATGAATACCCTTTTGGACATGTACTTCAAATGTGGGAGTTTTCGTGATGCTAGGAGAGTTTTCGATGACATGTCGAGCAAAAACACGACTACGTGGAACACTATGGTTTCGGGGTTTACTAAGGCTGGTTTGGTGGATGAGGCAGTGTGTTTGTTTCATCAAATGCAAGAGCCGAATGTTATATCTTGGAATAGCATTATTGCTGGTTTGGCGGATAATGGAAGTCCGCGCGCATTTGAATTCGTGTGTATAATGCACCGAGAAGGCCTCAAGTTAGATGGATTTACTTTCCCGTGCGCCCTTAAAACCTGTGGTCGACATGGTTTGTTAGCTTCTGGGAAACAACTCCACTGTTATGTTATAAAATCAGGTTTTGAATCAGGCATTTTTACTGTGTCGGCTTTGGTTGATATGTACTCGAATGGCAATGAATTGACTGAAGCTGTAAAACTGTTTGATCAGCGTTCAAGGTGCTATGCTTCCATTTCTGATAGTTTGGCACTTTGGAATTCTATGCTTTCAGGATACGTCATTAACGAATGCAATAGTGCAGCTTTGGATTTAGTTTTGAAAATCCATTGCTCAGGTACTTGCATGGATTCCTACACTTTCAGTGGCGCTTTAAAAGCTTGTGTCAACTTACGCAACTTGCGACTCGGGCATCAAGTGCATGGCTTGGTTGTAACCGCAGGGTATGAGTTAGATCATATTGTTGGAAGCATTCTTACAGACCTGCATGCAAGACTGGGGAATATTAATAATGCATTGGGATTGTTTCAAAGGCTTCCAAAGAAAGATGCCGTAGCTTGGACTGGTTTGATCATAGGGTGTGCAACAACGGGACAAAGCTGGCTAGCCTTTTCACTGTTTCGGGATATGGTGTATTTCGGTCTCGAAGTAGATCAATTTGTCCTTTCATTTATTCTGAAAGTTTGCTCCAGTTTAACATCTCTTGGAAGCGGAAAACAGGTTCATGCTTTCTCTGTTAAGAGTGGATATGAGTCTGAGGAAGTTGTAGTGACATCCCTGCTCGATATGTACTCAAAATGTGGTGAAATTAACAATGCATTAGCTCTGTTTGATTCTGTGGAAGAAAGAGACACCGTGTGTTGGACGGGGATAATTGTGGGGTGTGGGCAAAATGGAAGGGCAGAGGAAGCAATCAAATTTTTTAATGAGATGACAGAATCAGGATTGAAGCCAAACGAAATTACGTATTTAGGTGTTCTTTCTGCCTGTAGGCATGCTGGACTTGTAGAAGGGGCACGGACCATATTTAATTCCATGAAAATTTTACACGGTCTGGAACCTCGTTTAGAGCATTATTATTGCATGGTTGACATTCTAGGTCAAGCTGGATGTTTTAAAGAGGCAGAGCAGTTGATTGCTAAGATGCCATTTGAGCCTGACCCAATCATATGGAGATCATTGCTCGTGGCCTGTGGAACTCATAAAAATACTGAACTTGTTAATGTTATTGCCGATCAGATTCTCACAACCTTACCAGAAGACCCTTCCACGTATGTGACGCTTTCGAATGTTTATGCAGAACTAGGAATGTGGGATGATCTAAGCAAAGTTAGAATTGCCATCAAGAAAGTGGGTGCTAAAGAAGCAGGAAAGAGTTGGATTGAGATTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

694

Amino Acids

76.43

Weight (kDa)

6.16

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	70 - 118	1.8e-07	PPR repeat family
PPR	PF01535	73 - 101	3.9e-07	PPR repeat
PPR_2	PF13041	142 - 173	5.8e-06	PPR repeat family
PPR_2	PF13041	172 - 201	8e-06	PPR repeat family
PPR_1	PF12854	173 - 201	5.9e-07	PPR repeat
PPR	PF01535	176 - 202	1.9e-07	PPR repeat
PPR_2	PF13041	511 - 558	3.5e-12	PPR repeat family
PPR	PF01535	514 - 544	8.1e-07	PPR repeat
E_motif	PF20431	629 - 690	6.5e-10	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08210
fragaria_vesca	FvH4_2g26350
malus_domestica	MD08G1169600.v1.1
prunus_persica	Prupe.1G503500_v2.0.a1 Prupe.1G503500_v2.0.a1
pyrus_communis	pycom08g14510
rosa_chinensis	RchiOBHm_Chr6g0294931
rosa_laevigata	RLG00000011826
rosa_multiflora	Rmu_sc0002700.1_g000046
rosa_roxburghii	Rroxscaffold_7G00172820
rosa_rugosa	Rorug06G0248400
rosa_samantha	Rh6AG361600 Rh6BG369100 Rh6CG375600 Rh6DG362100
rosa_wichuraiana	Rw6G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
Acc36I	ACCTGC	1 cut(s)	1176
AccBSI	CCGCTC	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	751
AccII	CGCG	6 cut(s)	11, 158, 179, 181, 664, 666
AclI	AACGTT	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	5 cut(s)	5, 674, 943, 1601, 1725
AcuI	CTGAAG	1 cut(s)	894
AcyI	GRCGYC	1 cut(s)	314
AdeI	CACNNNGTG	1 cut(s)	1542
AfaI	GTAC	7 cut(s)	152, 284, 332, 458, 851, 1024, 1475
AfiI	CCNNNNNNNGG	4 cut(s)	61, 376, 1242, 1545
AflIII	ACRYGT	2 cut(s)	453, 504
AgsI	TTSAA	9 cut(s)	115, 463, 674, 812, 903, 1006, 1214, 1633, 2076
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AleI	CACNNNNGTG	1 cut(s)	1958
AloI	GAACNNNNNNTCC	2 cut(s)	1389, 1421
Alw26I	GTCTC	3 cut(s)	305, 1331, 1527
Ama87I	CYCGRG	1 cut(s)	1091
AoxI	GGCC	3 cut(s)	52, 700, 1872
ApeKI	GCWGC	1 cut(s)	986
ApoI	RAATTY	5 cut(s)	5, 674, 943, 1601, 1725
AseI	ATTAAT	1 cut(s)	1191
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	6 cut(s)	110, 181, 666, 668, 734, 1055
AspS9I	GGNCC	1 cut(s)	1704
AsuHPI	GGTGA	2 cut(s)	377, 1499
AsuII	TTCGAA	1 cut(s)	1970
AsuNHI	GCTAGC	1 cut(s)	1288
AvaI	CYCGRG	1 cut(s)	1091
AvaII	GGWCC	1 cut(s)	1704
BaeGI	GKGCMC	1 cut(s)	1702
BarI	GAAGNNNNNNTAC	2 cut(s)	1144, 1176
BauI	CACGAG	1 cut(s)	1868
BbsI	GAAGAC	1 cut(s)	1950
BbvI	GCAGC	1 cut(s)	998
BccI	CCATC	3 cut(s)	188, 707, 2033
BceAI	ACGGC	2 cut(s)	88, 1220
BciVI	GTATCC	1 cut(s)	953
BclI	TGATCA	2 cut(s)	892, 1254
BcoDI	GTCTC	3 cut(s)	305, 1331, 1527
BfaI	CTAG	4 cut(s)	486, 1289, 1781, 1988
BfmI	CTRYAG	1 cut(s)	1672
BfoI	RGCGCY	2 cut(s)	111, 1056
BfuAI	ACCTGC	1 cut(s)	1176
BfuI	GTATCC	1 cut(s)	953
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	2 cut(s)	52, 987
BlsI	GCNGC	2 cut(s)	53, 988
Bme18I	GGWCC	1 cut(s)	1704
BmeT110I	CYCGRG	1 cut(s)	1091
BmgT120I	GGNCC	1 cut(s)	1704
BmiI	GGNNCC	1 cut(s)	1743
BmrI	ACTGGG	1 cut(s)	1190
BmsI	GCATC	4 cut(s)	472, 1105, 1222, 1818
BmtI	GCTAGC	1 cut(s)	1292
BmuI	ACTGGG	1 cut(s)	1190
BpiI	GAAGAC	1 cut(s)	1950
BplI	GAGNNNNNCTC	2 cut(s)	687, 719
BpmI	CTGGAG	1 cut(s)	1357
Bpu10I	CCTNAGC	1 cut(s)	1018
Bpu14I	TTCGAA	1 cut(s)	1970
BpuEI	CTTGAG	1 cut(s)	689
BsaAI	YACGTR	3 cut(s)	528, 1650, 1956
BsaHI	GRCGYC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	1331
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 376, 1242, 1545
Bse1I	ACTGG	3 cut(s)	1185, 1252, 1374
Bse3DI	GCAATG	3 cut(s)	868, 1012, 1862
BseGI	GGATG	5 cut(s)	297, 577, 1457, 1799, 2005
BseLI	CCNNNNNNNGG	4 cut(s)	61, 376, 1242, 1545
BseMI	GCAATG	3 cut(s)	868, 1012, 1862
BseMII	CTCAG	4 cut(s)	74, 362, 1032, 1431
BseNI	ACTGG	3 cut(s)	1185, 1252, 1374
BsePI	GCGCGC	1 cut(s)	664
BseSI	GKGCMC	1 cut(s)	1702
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	998
BsgI	GTGCAG	1 cut(s)	1005
Bsh1236I	CGCG	6 cut(s)	11, 158, 179, 181, 664, 666
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	54, 702, 1874
BsiEI	CGRYCG	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	1091
BslFI	GGGAC	1 cut(s)	1290
BslI	CCNNNNNNNGG	4 cut(s)	61, 376, 1242, 1545
BsmAI	GTCTC	3 cut(s)	305, 1331, 1527
BsmBI	CGTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	1290
BsmI	GAATGC	3 cut(s)	204, 980, 1155
BsnI	GGCC	3 cut(s)	54, 702, 1874
Bso31I	GGTCTC	1 cut(s)	1331
BsoBI	CYCGRG	1 cut(s)	1091
Bsp119I	TTCGAA	1 cut(s)	1970
Bsp1286I	GDGCHC	1 cut(s)	1702
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	8 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918, 2002
BspANI	GGCC	3 cut(s)	54, 702, 1874
BspCNI	CTCAG	4 cut(s)	73, 363, 1031, 1432
BspFNI	CGCG	6 cut(s)	11, 158, 179, 181, 664, 666
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	1743
BspMI	ACCTGC	1 cut(s)	1176
BspOI	GCTAGC	1 cut(s)	1292
BspT104I	TTCGAA	1 cut(s)	1970
BspTNI	GGTCTC	1 cut(s)	1331
BsrBI	CCGCTC	1 cut(s)	35
BsrDI	GCAATG	3 cut(s)	868, 1012, 1862
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	3 cut(s)	1185, 1252, 1374
BssHII	GCGCGC	1 cut(s)	664
BssMI	GATC	8 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918, 2002
BssNI	GRCGYC	1 cut(s)	314
BssSI	CACGAG	1 cut(s)	1868
Bst2BI	CACGAG	1 cut(s)	1868
Bst4CI	ACNGT	8 cut(s)	47, 430, 788, 829, 888, 1302, 1540, 1736
BstACI	GRCGYC	1 cut(s)	314
BstAPI	GCANNNNNTGC	1 cut(s)	1102
BstAUI	TGTACA	1 cut(s)	282
BstBAI	YACGTR	3 cut(s)	528, 1650, 1956
BstBI	TTCGAA	1 cut(s)	1970
BstC8I	GCNNGC	5 cut(s)	666, 1173, 1286, 1290, 1680
BstDEI	CTNAG	7 cut(s)	60, 371, 555, 1018, 1440, 1824, 2006
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	5 cut(s)	297, 577, 1457, 1799, 2005
BstFNI	CGCG	6 cut(s)	11, 158, 179, 181, 664, 666
BstH2I	RGCGCY	2 cut(s)	111, 1056
BstHHI	GCGC	6 cut(s)	110, 181, 666, 668, 734, 1055
BstKTI	GATC	8 cut(s)	59, 895, 1141, 1257, 1339, 1862, 1921, 2005
BstMAI	GTCTC	3 cut(s)	305, 1331, 1527
BstMBI	GATC	8 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918, 2002
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 644, 1061, 1093, 1102, 1592, 1837, 2048
BstNSI	RCATGY	4 cut(s)	457, 508, 1175, 1682
BstPI	GGTNACC	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	1672
BstSLI	GKGCMC	1 cut(s)	1702
BstSNI	TACGTA	1 cut(s)	1650
BstUI	CGCG	6 cut(s)	11, 158, 179, 181, 664, 666
BstV1I	GCAGC	1 cut(s)	998
BstV2I	GAAGAC	1 cut(s)	1950
BstXI	CCANNNNNNTGG	1 cut(s)	1854
BstZI	CGGCCG	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	3 cut(s)	54, 702, 1874
BtsCI	GGATG	5 cut(s)	297, 577, 1457, 1799, 2005
BtsI	GCAGTG	2 cut(s)	279, 585
BtsIMutI	CAGTG	7 cut(s)	43, 279, 426, 585, 784, 1054, 1298
BveI	ACCTGC	1 cut(s)	1176
Cac8I	GCNNGC	5 cut(s)	666, 1173, 1286, 1290, 1680
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	6 cut(s)	110, 181, 666, 668, 734, 1055
Cfr13I	GGNCC	1 cut(s)	1704
CseI	GACGC	3 cut(s)	185, 322, 1972
Csp6I	GTAC	7 cut(s)	151, 283, 331, 457, 850, 1023, 1474
CviQI	GTAC	7 cut(s)	151, 283, 331, 457, 850, 1023, 1474
DdeI	CTNAG	7 cut(s)	60, 371, 555, 1018, 1440, 1824, 2006
DpnI	GATC	8 cut(s)	58, 894, 1140, 1256, 1338, 1861, 1920, 2004
DpnII	GATC	8 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918, 2002
DraI	TTTAAA	2 cut(s)	1059, 1801
DraIII	CACNNNGTG	1 cut(s)	1542
EaeI	YGGCCR	1 cut(s)	52
EagI	CGGCCG	1 cut(s)	52
EciI	GGCGGA	2 cut(s)	29, 662
EclXI	CGGCCG	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	1650
Eco147I	AGGCCT	1 cut(s)	702
Eco31I	GGTCTC	1 cut(s)	1331
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	1704
Eco52I	CGGCCG	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	894
Eco88I	CYCGRG	1 cut(s)	1091
Eco91I	GGTNACC	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	365
EcoRI	GAATTC	3 cut(s)	5, 674, 943
EcoRV	GATATC	1 cut(s)	144
EcoT22I	ATGCAT	2 cut(s)	1201, 1504
Esp3I	CGTCTC	1 cut(s)	305
FaqI	GGGAC	1 cut(s)	1290
FauNDI	CATATG	1 cut(s)	1853
FbaI	TGATCA	2 cut(s)	892, 1254
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	2 cut(s)	52, 987
FokI	GGATG	5 cut(s)	304, 584, 1444, 1806, 2012
Fsp4HI	GCNGC	2 cut(s)	52, 987
FspBI	CTAG	4 cut(s)	486, 1289, 1781, 1988
GlaI	GCGC	6 cut(s)	109, 180, 665, 667, 733, 1054
GluI	GCNGC	2 cut(s)	52, 987
GsuI	CTGGAG	1 cut(s)	1357
HaeII	RGCGCY	2 cut(s)	111, 1056
HaeIII	GGCC	3 cut(s)	54, 702, 1874
HgaI	GACGC	3 cut(s)	185, 322, 1972
HhaI	GCGC	6 cut(s)	110, 181, 666, 668, 734, 1055
Hin1I	GRCGYC	1 cut(s)	314
Hin6I	GCGC	6 cut(s)	108, 179, 664, 666, 732, 1053
HinP1I	GCGC	6 cut(s)	108, 179, 664, 666, 732, 1053
HincII	GTYRAC	3 cut(s)	752, 1072, 1774
HindII	GTYRAC	3 cut(s)	752, 1072, 1774
HindIII	AAGCTT	2 cut(s)	348, 1062
HphI	GGTGA	2 cut(s)	377, 1499
Hpy166II	GTNNAC	4 cut(s)	552, 752, 1072, 1774
Hpy188I	TCNGA	8 cut(s)	18, 141, 304, 310, 925, 1362, 1441, 1923
Hpy188III	TCNNGA	8 cut(s)	392, 479, 957, 1307, 1328, 1626, 1739, 2029
Hpy8I	GTNNAC	4 cut(s)	552, 752, 1072, 1774
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	5 cut(s)	178, 692, 1575, 1688, 1959
HpyCH4III	ACNGT	8 cut(s)	47, 430, 788, 829, 888, 1302, 1540, 1736
HpyCH4IV	ACGT	7 cut(s)	120, 153, 213, 527, 963, 1649, 1955
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 644, 1061, 1093, 1102, 1592, 1837, 2048
HpyF3I	CTNAG	7 cut(s)	60, 371, 555, 1018, 1440, 1824, 2006
HpySE526I	ACGT	7 cut(s)	120, 153, 213, 527, 963, 1649, 1955
Hsp92I	GRCGYC	1 cut(s)	314
HspAI	GCGC	6 cut(s)	108, 179, 664, 666, 732, 1053
Ksp22I	TGATCA	2 cut(s)	892, 1254
Kzo9I	GATC	8 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918, 2002
LmnI	GCTCC	1 cut(s)	1376
Lsp1109I	GCAGC	1 cut(s)	998
LweI	GCATC	4 cut(s)	472, 1105, 1222, 1818
MaeI	CTAG	4 cut(s)	486, 1289, 1781, 1988
MaeII	ACGT	7 cut(s)	120, 153, 213, 527, 963, 1649, 1955
MaeIII	GTNAC	6 cut(s)	173, 217, 365, 1117, 1453, 1960
MalI	GATC	8 cut(s)	58, 894, 1140, 1256, 1338, 1861, 1920, 2004
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	8 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918, 2002
MboII	GAAGA	2 cut(s)	1538, 1955
MhlI	GDGCHC	1 cut(s)	1702
MlyI	GAGTC	3 cut(s)	308, 1083, 1445
MmeI	TCCRAC	5 cut(s)	276, 396, 1129, 1526, 2042
MnlI	CCTC	8 cut(s)	390, 405, 568, 713, 1435, 1582, 1755, 1798
Mph1103I	ATGCAT	2 cut(s)	1201, 1504
MroXI	GAANNNNTTC	1 cut(s)	323
MslI	CAYNNNNRTG	2 cut(s)	789, 1958
Mva1269I	GAATGC	3 cut(s)	204, 980, 1155
MvnI	CGCG	6 cut(s)	11, 158, 179, 181, 664, 666
MwoI	GCNNNNNNNGC	8 cut(s)	48, 644, 1061, 1093, 1102, 1592, 1837, 2048
NdeI	CATATG	1 cut(s)	1853
NdeII	GATC	8 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918, 2002
NheI	GCTAGC	1 cut(s)	1288
NlaIV	GGNNCC	1 cut(s)	1743
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	5 cut(s)	173, 217, 365, 1453, 1960
NsiI	ATGCAT	2 cut(s)	1201, 1504
NspI	RCATGY	4 cut(s)	457, 508, 1175, 1682
NspV	TTCGAA	1 cut(s)	1970
OliI	CACNNNNGTG	1 cut(s)	1958
PaeI	GCATGC	2 cut(s)	1175, 1682
PagI	TCATGA	1 cut(s)	391
PauI	GCGCGC	1 cut(s)	664
PceI	AGGCCT	1 cut(s)	702
PciI	ACATGT	2 cut(s)	453, 504
PcsI	WCGNNNNNNNCGW	3 cut(s)	314, 969, 1084
PctI	GAATGC	3 cut(s)	204, 980, 1155
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	7 cut(s)	305, 388, 812, 1034, 1517, 1622, 1924
PkrI	GCNGC	2 cut(s)	53, 988
PleI	GAGTC	3 cut(s)	307, 1083, 1444
PpsI	GAGTC	3 cut(s)	307, 1083, 1444
Ppu21I	YACGTR	3 cut(s)	528, 1650, 1956
PscI	ACATGT	2 cut(s)	453, 504
PshBI	ATTAAT	1 cut(s)	1191
PsiI	TTATAA	1 cut(s)	797
Psp1406I	AACGTT	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	1743
PspPI	GGNCC	1 cut(s)	1704
PteI	GCGCGC	1 cut(s)	664
RsaI	GTAC	7 cut(s)	152, 284, 332, 458, 851, 1024, 1475
RsaNI	GTAC	7 cut(s)	151, 283, 331, 457, 850, 1023, 1474
RseI	CAYNNNNRTG	2 cut(s)	789, 1958
SalI	GTCGAC	1 cut(s)	750
SatI	GCNGC	2 cut(s)	52, 987
Sau3AI	GATC	8 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918, 2002
Sau96I	GGNCC	1 cut(s)	1704
SchI	GAGTC	3 cut(s)	308, 1083, 1445
SduI	GDGCHC	1 cut(s)	1702
SfaNI	GCATC	4 cut(s)	472, 1105, 1222, 1818
SfcI	CTRYAG	1 cut(s)	1672
SfuI	TTCGAA	1 cut(s)	1970
SinI	GGWCC	1 cut(s)	1704
SmiMI	CAYNNNNRTG	2 cut(s)	789, 1958
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SnaBI	TACGTA	1 cut(s)	1650
SphI	GCATGC	2 cut(s)	1175, 1682
SseBI	AGGCCT	1 cut(s)	702
SspI	AATATT	1 cut(s)	1189
SspMI	CTAG	4 cut(s)	486, 1289, 1781, 1988
StuI	AGGCCT	1 cut(s)	702
TaaI	ACNGT	8 cut(s)	47, 430, 788, 829, 888, 1302, 1540, 1736
TaiI	ACGT	7 cut(s)	123, 156, 216, 530, 966, 1652, 1958
TaqI	TCGA	7 cut(s)	498, 509, 751, 854, 1329, 1467, 1970
TaqII	GACCGA	1 cut(s)	1313
TatI	WGTACW	5 cut(s)	282, 330, 456, 849, 1473
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	7 cut(s)	305, 388, 812, 1034, 1517, 1622, 1924
TscAI	CASTG	7 cut(s)	50, 279, 433, 585, 791, 1054, 1305
TseFI	GTSAC	5 cut(s)	173, 217, 365, 1453, 1960
TseI	GCWGC	1 cut(s)	986
Tsp45I	GTSAC	5 cut(s)	173, 217, 365, 1453, 1960
TspDTI	ATGAA	8 cut(s)	316, 380, 452, 581, 879, 1341, 1397, 1736
TspGWI	ACGGA	1 cut(s)	1717
TspRI	CASTG	7 cut(s)	50, 279, 433, 585, 791, 1054, 1305
VpaK11BI	GGWCC	1 cut(s)	1704
VspI	ATTAAT	1 cut(s)	1191
XapI	RAATTY	5 cut(s)	5, 674, 943, 1601, 1725
XceI	RCATGY	4 cut(s)	457, 508, 1175, 1682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2032
XmiI	GTMKAC	1 cut(s)	751
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	4 cut(s)	486, 1289, 1781, 1988
Zsp2I	ATGCAT	2 cut(s)	1201, 1504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.