Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015471

Physical Location & Seq

Genomic Coordinates Forward (+)

13087236 .. 13096110

Gene Structure 8875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4218 bp

ATGGGAGCCAAAGCCAAGTCCCACCACCATTACAACGGCGGCAATGGCGGTGGCTGCGGCAGCGACAGCAGCAGCAGCACATCTCCAAGCCCGCCACCGTCACCGCGCCGTAATAACTCTAGTTCAGTCTCCTCCTACCGCCGGAAACTCCGGTCAAAACCCATGTCGGTCGTCGCCGGCTTCCTGGTCCTCCGTCGGTTCTTGCGACTGCTTGTGGTTCTGCCCCTTCTGTACGTCTCTGGACTTGTCATGTGTGTCGGTGTGGGCCCCTTCTGCTCTCTGGTGGGCCATACCCCTCACCCTGGGTCGGTTTACCGGAGCCACGAGATGTTTCAGATGCTCTGGCCTCATATTCAGGCCGACAATTCTACTCCGATCGAGTTGTCTTCTGTGTGGAGATACAGAAGGAAGCTGAAAGAGCAGAAGCCTTGTCCACATTCAACTGCAGGACCACAGTCTGACAATGCTTCCCCTAGTGGTTACTTGATAGTGGAGGTTAATGGCGGTCTTAACCAACAACGCTCTGCGATTTGCAACGCCGTGGCTCTTGCTGGACTTTTGAATGCAATTCTAGTCATTCCTCACTTTGAATTCAATAGTGTTTGGAGAGATCGAAGTACTTTTAACGATATATATGATGAAGATCATTTCGTAGCTACTCTTGAGGGCTACGTTAGAGTGGTTAAAGAACTACCTGAGGTACTGCTGGAGAGATATGATCACAACATCAGTAACATACCAAATATTCGTGTCGAAGCTTGGGCTCCTGTTCGGTATTACACAGGAGAAGTTTATCCTGTTCTGCAGAGCCAGGGGGTTGTACGGATAGCTCCATTTGCTAATAGGTTATCGATGAGTGTCCCACCTCCTATTCAGTATCTAAGATGCCTCTCTAATTATGAAGCATTGCAATTCTCTTCTTCCATATCAAATTTGGCAAAGAAACTAGTTGAACGAATGACAGAGAAGAGTTCAAGGAGTGGTGGAAAGTATGTTTCAATCCACCTCCGTTTTGAGGAGGACATGGTGGCATTCTCATGCTGTTTGTATGATGGAGGAGAGGCTGAAAAAGTGGAAATGAATTTAATACGACAAAAAGGATGGGGAGATAAGTTCAAACGTAAAGGCCGTGTAACTCTGCCAGGTCTCAATCGGATTAATGGAAAATGTCCACTCACCCCCTTGGAGGTTGGAATGGTGCTACGGGGTATGGGATTTGATAATACTACTGCAATATATTTAGCATCGGGGAAAATATATTGGGCAGAGAAGCATTTAGCCCCTTTGCTGAAGATGTTTCCCTATCTGCACACTAAAGAGTCTCTTGCAACGCCAAATGAGCTTGCTCCGTTTGAGGGATATTCTTCAAGATTGGCAGCTTTGGACTATACAGTATGCTTGTTTAGTGAGGTTTTTGTAACAACCCAAGGTGGGAACTTCCCACATTTCCTAATGGGTCATCGGAGATTCATCCATGGTGGACATTCCAAGACTATTGTGCCTGACAAGCGCAAGCTTGTTGTTCTGCTGCAGGACATGGGTATCAGTTGGACAGATTTCAGACTTCAGATGCAAACAATGCTCAGTGAGAGTGACCGCAAGGGAATGATTATACCGAGAGTGAAAAAATTTACACGAAAATCTTCTGTGTACACTTACCCTTTGCCAGAATGTAGATGTCTACAAAGACACAATAACACTCGGATTGTCCCATCTACACTCTCGGGTTTCATGACAAAGCTGCATGCAGGCCCAATCTTCGTGTGGTCTTCCCCTGTCTGCATCAGAGGCAATGCACGGCCTCCTATACCCTCCTTCATGGCTGTCATGTACTTGAACCGCATAGCTATAGCTCTCACCCACTGCCGCCGAGTCCAGGCCTTCAATCACGGCAAGGCATTTCACTCCCAGTTGATCAAACTCGGCATTTCCGCTGATGTTTTCCTCTCCAACAATCTGATTTCCATGTACGCGTACTCGCCTCGTCTGATCGACGATGCACAGAAGCTGTTCGACGAAATGCCTCACAGAAACATTGTCACGTGGACCACCATGGTCTCTGCGTATACTAAGTGCGGGAGAGGTGGTGAGGCTGTAAGGCTATATGGGTTTATGGTGGAGTGGGGTTTGGAGAGGCCCAATGGGTTTATGTACTCTGCTGTGCTCAAGGCTTGTGGCTCGGTGGGTGAACTCGGATTGGGGAGGGTGATCCATGAGAGGATATCTAGAGCTGGGTTGGTGTTTGACACTGTTTTGATGAACACCCTTTTGGATATGTACGTGAAATGTGGGAGTTTGGGTGATGCCAAGAGGGCTTTTGATGGGATGTTGGATAGGAACTCGACGACGTGGAACACCATGATTTCGGGGTATAGTAAGGCTGGTTTGATGGATGAGGCGGTGGGGCTGTTTCGTCGGATGCAAGAGCCAAATGCTGCATCCTGGAACAGTATTATTACTGGTTTTGTGAATAATGGGAGCCCGCGTGCGTTGGAATTTGTGAGTATGATGCACCGAGAAGGCTTCAGGCTTGATTGTTTTACTTTCCCATGTGCTTTTAAGACCTGTGCTTGCTATGGTTCATTAGCCTCTGGGAAGCAGATTCATTGTTATGTTATACAGTCCGGTTTTGAGTCTGATAGATTTACTTTGTCGGCACTGATTGATATGTATTCAAATTTCAATCAATTGGATGAAGCCATAAAGTTGTTCGGTCAGCACTCAATGTGCAATACTTCCATTAGTTTGGCACTTTGGAATTCCATGATTTCTGGATTTGTCATTAATGAACATAATTGTGCAGCTCTGGGTTTAGTTTCAAAAGTCCATTGCTCAGGTGCACAGATGGATTCTTACTCTTATAGTGGTGCTTTAAAGGCCTGCATCAACTTGCTTAACTTGAGACTTGGGCGTCAAGTGCATGGTTTGGTTGTCACCACAGGATATGAGTTGGATTATGTTGTTGGAAGCATTCTTACAGACCTGTATACAAGAGTGGGAAACATTAAGGATGCATTGGGGTTGTTTCACAGGCTTCCAATGAAAGACACTGTAGCCTGGTCTGGTTTGATCATAGGGTGTGCTAAAATGGGACTAAGCTGGTTAGCTTTTTCACTGTTTAGGGATATGGTGTATTTGGATATAGAAGTAGATCAATTTGTCATTTCATTTGTTCTGAAAGTTTGCTCCAGTCTAACATCTCTTGGAAGTGGCAAACAGGTTCATGCTTTCTGTGTTAAGAGTGGATATGAATCTGAGGGGGTTGTGGTGACATCGCTGATTGATATGTACTCAAAATGTGGTGATATTGAGAATGGGTTGGCTCTGTTTGATTCTGTGGCAGACAGAGACACTGTGTGTTGGACTGGAATAATTGTGGGGTGTGGGCAAAATGGAAGAGCAGATGAAGCAATTAAACTTTTCAATAAGATGATAGAATCAGGGTTGAAGCCGAACGACATTACATATCTAGGAGTTCTTTCTGCGTGCAGGCATGCTGGTTTTGTTAAAAATGCAAGGACCATCTTTAATTCTATGAAACAAGAGCATGGACTAGAACCTGGTGTAGAGCATTACTATTGCATGGTTGACATTCTTGGTCAAGCTGGATGTTTTAAAGAGGCTTTAGATTTCATTGCTAAGTTGCCATTTGAGCCCGACCAAATCATATGGAGATCATTAGTTGGAGCCTGTGGAACTCATAAAAACACTGAACTAGTAAATATCATTGCTGATCACCTTCTTGCAACTTCACCGGAAGACCCTTCCACATATGTGACACTTTCAAATGTTTATGCAGAATTGGGAATGTGGGTTGATTTAAGCAAAGTTAGAACAGCTGTCAAGAAACTTGCAAAGATTAGAGAAGGAGGCCTTGGTGGCAAAGTCCAGAGATGTATTTGTCTTATGGTTCTTGATAGAGCTAACTGCAGGCATGGATGCTCAGAAAGTTGCCTCTACATGATATTTATCTTTGGTTGCAGAAATTTGCACAGAAGGGGAGGAAGAAGAACACAGCTGTTACATTTTGTTAAAGAGACCCAGCATTCCTCCATAGTCGATCTATTTGAAGATTTAGCTTCCCTTCCTGTGTATCATATCTGGGGTATGATGATACAATCAGTAGCTGAGCAAGTTGCCAGTTTGAATCCAAAACTCAAAAGAGCCTTGCCACTCAAGTTTGGTATTCCCAAGCGAAGGTCCATGATGGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

1406

Amino Acids

156.45

Weight (kDa)

9.07

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	161 - 490	3.6e-95	GDP-fucose protein O-fucosyltransferase
PPR_2	PF13041	677 - 725	8.2e-08	PPR repeat family
PPR	PF01535	680 - 710	4.8e-06	PPR repeat
PPR_1	PF12854	778 - 808	5.7e-08	PPR repeat
PPR_2	PF13041	780 - 808	1.7e-06	PPR repeat family
PPR	PF01535	783 - 809	1e-09	PPR repeat
PPR_2	PF13041	1116 - 1163	2.7e-11	PPR repeat family
PPR	PF01535	1119 - 1149	5.9e-07	PPR repeat
E_motif	PF20431	1234 - 1283	5.9e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08210
fragaria_vesca	FvH4_2g26350
malus_domestica	MD08G1169600.v1.1
prunus_persica	Prupe.1G503500_v2.0.a1 Prupe.1G503500_v2.0.a1
pyrus_communis	pycom08g14510
rosa_chinensis	RchiOBHm_Chr6g0294931
rosa_laevigata	RLG00000011826
rosa_multiflora	Rmu_sc0002700.1_g000046
rosa_roxburghii	Rroxscaffold_7G00172820
rosa_rugosa	Rorug06G0248400
rosa_samantha	Rh6AG361600 Rh6BG369100 Rh6CG375600 Rh6DG362100
rosa_wichuraiana	Rw6G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2910
AccI	GTMKAC	3 cut(s)	1681, 2066, 2987
AccII	CGCG	3 cut(s)	106, 1973, 2485
AclWI	GGATC	1 cut(s)	2203
AcsI	RAATTY	8 cut(s)	590, 931, 1081, 1628, 2495, 2677, 2758, 3985
AcuI	CTGAAG	3 cut(s)	1310, 1550, 2509
AcvI	CACGTG	1 cut(s)	2043
AcyI	GRCGYC	1 cut(s)	2911
AdeI	CACNNNGTG	1 cut(s)	3357
AfiI	CCNNNNNNNGG	9 cut(s)	141, 302, 307, 1015, 1186, 1355, 1431, 1876, 4197
AflIII	ACRYGT	1 cut(s)	1971
AhlI	ACTAGT	2 cut(s)	946, 3715
AjiI	CACGTC	1 cut(s)	2349
AjnI	CCWGG	8 cut(s)	183, 301, 810, 1141, 1875, 2441, 3056, 3559
AjuI	GAANNNNNNNTTGG	4 cut(s)	2252, 2284, 3858, 3890
AleI	CACNNNNGTG	1 cut(s)	3773
Alw21I	GWGCWC	2 cut(s)	2166, 2842
Alw26I	GTCTC	8 cut(s)	133, 241, 1151, 1326, 2062, 2896, 3342, 4031
Alw44I	GTGCAC	1 cut(s)	2838
AlwI	GGATC	1 cut(s)	2203
AlwNI	CAGNNNCTG	2 cut(s)	2008, 4127
Ama87I	CYCGRG	1 cut(s)	1723
ApaI	GGGCCC	1 cut(s)	269
ApaLI	GTGCAC	1 cut(s)	2838
ApoI	RAATTY	8 cut(s)	590, 931, 1081, 1628, 2495, 2677, 2758, 3985
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AseI	ATTAAT	2 cut(s)	1158, 2784
Asp700I	GAANNNNTTC	2 cut(s)	1642, 2009
AspLEI	GCGC	2 cut(s)	108, 1512
AvaI	CYCGRG	1 cut(s)	1723
AvaII	GGWCC	5 cut(s)	187, 449, 2046, 3519, 4200
AxyI	CCTNAGG	1 cut(s)	696
BaeGI	GKGCMC	2 cut(s)	269, 2842
BaeI	ACNNNNGTAYC	2 cut(s)	1525, 1558
BanII	GRGCYC	4 cut(s)	269, 766, 2483, 3657
BarI	GAAGNNNNNNTAC	2 cut(s)	2959, 2991
BauI	CACGAG	1 cut(s)	323
BbrPI	CACGTG	1 cut(s)	2043
BbsI	GAAGAC	3 cut(s)	378, 1761, 3765
Bbv12I	GWGCWC	2 cut(s)	2166, 2842
BccI	CCATC	8 cut(s)	1046, 1095, 1720, 2315, 2383, 2839, 3530, 4201
BceAI	ACGGC	6 cut(s)	52, 93, 524, 1113, 1814, 1906
BciT130I	CCWGG	8 cut(s)	185, 303, 812, 1143, 1877, 2443, 3058, 3561
BclI	TGATCA	4 cut(s)	718, 1914, 3069, 3733
BcoDI	GTCTC	8 cut(s)	133, 241, 1151, 1326, 2062, 2896, 3342, 4031
BcuI	ACTAGT	2 cut(s)	946, 3715
BfaI	CTAG	8 cut(s)	120, 474, 572, 947, 2226, 3470, 3554, 3716
BfmI	CTRYAG	6 cut(s)	444, 803, 1529, 1848, 3051, 3928
BglI	GCCNNNNNGGC	2 cut(s)	2312, 3879
BlpI	GCTNAGC	1 cut(s)	4128
BmcAI	AGTACT	1 cut(s)	619
Bme1390I	CCNGG	8 cut(s)	185, 303, 812, 1143, 1877, 2443, 3058, 3561
Bme18I	GGWCC	5 cut(s)	187, 449, 2046, 3519, 4200
BmeT110I	CYCGRG	1 cut(s)	1723
BmgBI	CACGTC	1 cut(s)	2349
BmiI	GGNNCC	7 cut(s)	7, 267, 268, 320, 765, 2480, 3688
BmrFI	CCNGG	8 cut(s)	185, 303, 812, 1143, 1877, 2443, 3058, 3561
BmrI	ACTGGG	1 cut(s)	1903
BmuI	ACTGGG	1 cut(s)	1903
BoxI	GACNNNNGTC	1 cut(s)	454
BpiI	GAAGAC	3 cut(s)	378, 1761, 3765
BpmI	CTGGAG	2 cut(s)	728, 3172
Bpu10I	CCTNAGC	1 cut(s)	2833
Bpu1102I	GCTNAGC	1 cut(s)	4128
BpuEI	CTTGAG	4 cut(s)	683, 2150, 2920, 4160
Bsa29I	ATCGAT	1 cut(s)	851
BsaAI	YACGTR	2 cut(s)	2043, 2281
BsaBI	GATNNNNATC	3 cut(s)	642, 3250, 3968
BsaHI	GRCGYC	1 cut(s)	2911
BsaI	GGTCTC	3 cut(s)	1151, 2062, 4031
BsaJI	CCNNGG	9 cut(s)	301, 302, 540, 811, 1182, 1426, 1474, 2052, 3874
BsaWI	WCCGGW	4 cut(s)	150, 315, 2624, 3754
BsaXI	ACNNNNNCTCC	6 cut(s)	2071, 2101, 2284, 2314, 2470, 2500
Bsc4I	CCNNNNNNNGG	9 cut(s)	141, 302, 307, 1015, 1186, 1355, 1431, 1876, 4197
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	5 cut(s)	1909, 2464, 3189, 3370, 4140
Bse21I	CCTNAGG	1 cut(s)	696
Bse3DI	GCAATG	6 cut(s)	49, 905, 1798, 2827, 3633, 3726
Bse8I	GATNNNNATC	3 cut(s)	642, 3250, 3968
BseBI	CCWGG	8 cut(s)	185, 303, 812, 1143, 1877, 2443, 3058, 3561
BseCI	ATCGAT	1 cut(s)	851
BseDI	CCNNGG	9 cut(s)	301, 302, 540, 811, 1182, 1426, 1474, 2052, 3874
BseJI	GATNNNNATC	3 cut(s)	642, 3250, 3968
BseLI	CCNNNNNNNGG	9 cut(s)	141, 302, 307, 1015, 1186, 1355, 1431, 1876, 4197
BseMI	GCAATG	6 cut(s)	49, 905, 1798, 2827, 3633, 3726
BseMII	CTCAG	6 cut(s)	687, 1597, 2847, 3246, 3957, 4119
BseNI	ACTGG	5 cut(s)	1909, 2464, 3189, 3370, 4140
BseRI	GAGGAG	3 cut(s)	121, 1031, 1071
BseSI	GKGCMC	2 cut(s)	269, 2842
BseYI	CCCAGC	2 cut(s)	2231, 4041
BsgI	GTGCAG	3 cut(s)	1292, 2820, 3508
Bsh1236I	CGCG	3 cut(s)	106, 1973, 2485
Bsh1285I	CGRYCG	2 cut(s)	171, 378
BshVI	ATCGAT	1 cut(s)	851
BsiEI	CGRYCG	2 cut(s)	171, 378
BsiHKAI	GWGCWC	2 cut(s)	2166, 2842
BsiHKCI	CYCGRG	1 cut(s)	1723
BsiSI	CCGG	6 cut(s)	142, 151, 177, 316, 2625, 3755
BslFI	GGGAC	4 cut(s)	4, 845, 1694, 3105
BslI	CCNNNNNNNGG	9 cut(s)	141, 302, 307, 1015, 1186, 1355, 1431, 1876, 4197
BsmAI	GTCTC	8 cut(s)	133, 241, 1151, 1326, 2062, 2896, 3342, 4031
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	4 cut(s)	4, 845, 1694, 3105
BsmI	GAATGC	4 cut(s)	568, 1031, 2970, 4045
Bso31I	GGTCTC	3 cut(s)	1151, 2062, 4031
BsoBI	CYCGRG	1 cut(s)	1723
Bsp120I	GGGCCC	1 cut(s)	265
Bsp1286I	GDGCHC	6 cut(s)	269, 766, 2166, 2483, 2842, 3657
Bsp1407I	TGTACA	1 cut(s)	1650
Bsp1720I	GCTNAGC	1 cut(s)	4128
Bsp19I	CCATGG	2 cut(s)	1474, 2052
BspCNI	CTCAG	6 cut(s)	688, 1596, 2846, 3247, 3956, 4120
BspDI	ATCGAT	1 cut(s)	851
BspFNI	CGCG	3 cut(s)	106, 1973, 2485
BspHI	TCATGA	1 cut(s)	1731
BspLI	GGNNCC	7 cut(s)	7, 267, 268, 320, 765, 2480, 3688
BspMAI	CTGCAG	4 cut(s)	448, 807, 1533, 3932
BspPI	GGATC	1 cut(s)	2203
BspQI	GCTCTTC	1 cut(s)	3391
BspTNI	GGTCTC	3 cut(s)	1151, 2062, 4031
BsrDI	GCAATG	6 cut(s)	49, 905, 1798, 2827, 3633, 3726
BsrFI	RCCGGY	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	1650
BsrI	ACTGG	5 cut(s)	1909, 2464, 3189, 3370, 4140
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	9 cut(s)	301, 302, 540, 811, 1182, 1426, 1474, 2052, 3874
BssNAI	GTATAC	2 cut(s)	2067, 2988
BssNI	GRCGYC	1 cut(s)	2911
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	5 cut(s)	1182, 1426, 1474, 2052, 3874
Bst1107I	GTATAC	2 cut(s)	2067, 2988
Bst2BI	CACGAG	1 cut(s)	323
Bst2UI	CCWGG	8 cut(s)	185, 303, 812, 1143, 1877, 2443, 3058, 3561
Bst4CI	ACNGT	9 cut(s)	99, 456, 1393, 2251, 2450, 2622, 3052, 3117, 3355
Bst6I	CTCTTC	3 cut(s)	922, 962, 3391
BstACI	GRCGYC	1 cut(s)	2911
BstAPI	GCANNNNNTGC	1 cut(s)	1579
BstAUI	TGTACA	1 cut(s)	1650
BstBAI	YACGTR	2 cut(s)	2043, 2281
BstDSI	CCRYGG	3 cut(s)	540, 1474, 2052
BstFNI	CGCG	3 cut(s)	106, 1973, 2485
BstHHI	GCGC	2 cut(s)	108, 1512
BstMAI	GTCTC	8 cut(s)	133, 241, 1151, 1326, 2062, 2896, 3342, 4031
BstMCI	CGRYCG	2 cut(s)	171, 378
BstNI	CCWGG	8 cut(s)	185, 303, 812, 1143, 1877, 2443, 3058, 3561
BstNSI	RCATGY	2 cut(s)	1748, 3497
BstPAI	GACNNNNGTC	1 cut(s)	454
BstSCI	CCNGG	8 cut(s)	183, 301, 810, 1141, 1875, 2441, 3056, 3559
BstSFI	CTRYAG	6 cut(s)	444, 803, 1529, 1848, 3051, 3928
BstSLI	GKGCMC	2 cut(s)	269, 2842
BstUI	CGCG	3 cut(s)	106, 1973, 2485
BstV2I	GAAGAC	3 cut(s)	378, 1761, 3765
BstXI	CCANNNNNNTGG	1 cut(s)	2746
BstZ17I	GTATAC	2 cut(s)	2067, 2988
Bsu15I	ATCGAT	1 cut(s)	851
Bsu36I	CCTNAGG	1 cut(s)	696
BsuTUI	ATCGAT	1 cut(s)	851
BtgI	CCRYGG	3 cut(s)	540, 1474, 2052
BtgZI	GCGATG	1 cut(s)	3258
BtrI	CACGTC	1 cut(s)	2349
BtsI	GCAGTG	1 cut(s)	1861
BtsIMutI	CAGTG	8 cut(s)	1591, 1861, 2247, 2657, 3048, 3113, 3351, 3708
CaiI	CAGNNNCTG	2 cut(s)	2008, 4127
CciI	TCATGA	1 cut(s)	1731
CfoI	GCGC	2 cut(s)	108, 1512
Cfr10I	RCCGGY	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	851
CseI	GACGC	1 cut(s)	2900
CsiI	ACCWGGT	1 cut(s)	3559
CspCI	CAANNNNNGTGG	4 cut(s)	31, 66, 2155, 2190
DraI	TTTAAA	2 cut(s)	2874, 3616
DraIII	CACNNNGTG	1 cut(s)	3357
DrdI	GACNNNNNNGTC	1 cut(s)	2910
DseDI	GACNNNNNNGTC	1 cut(s)	2910
Eam1104I	CTCTTC	3 cut(s)	922, 962, 3391
EarI	CTCTTC	3 cut(s)	922, 962, 3391
Eco130I	CCWWGG	5 cut(s)	1182, 1426, 1474, 2052, 3874
Eco147I	AGGCCT	3 cut(s)	1880, 2879, 3873
Eco24I	GRGCYC	4 cut(s)	269, 766, 2483, 3657
Eco31I	GGTCTC	3 cut(s)	1151, 2062, 4031
Eco32I	GATATC	1 cut(s)	2223
Eco47I	GGWCC	5 cut(s)	187, 449, 2046, 3519, 4200
Eco57I	CTGAAG	3 cut(s)	1310, 1550, 2509
Eco72I	CACGTG	1 cut(s)	2043
Eco81I	CCTNAGG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	1723
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRI	GAATTC	2 cut(s)	590, 2758
EcoRII	CCWGG	8 cut(s)	183, 301, 810, 1141, 1875, 2441, 3056, 3559
EcoRV	GATATC	1 cut(s)	2223
EcoT14I	CCWWGG	5 cut(s)	1182, 1426, 1474, 2052, 3874
EcoT22I	ATGCAT	2 cut(s)	3016, 4216
EcoT38I	GRGCYC	4 cut(s)	269, 766, 2483, 3657
ErhI	CCWWGG	5 cut(s)	1182, 1426, 1474, 2052, 3874
Esp3I	CGTCTC	1 cut(s)	241
FalI	AAGNNNNNCTT	4 cut(s)	1308, 1340, 3858, 3890
FaqI	GGGAC	4 cut(s)	4, 845, 1694, 3105
FauI	CCCGC	3 cut(s)	99, 2069, 2490
FauNDI	CATATG	2 cut(s)	3668, 3772
FbaI	TGATCA	4 cut(s)	718, 1914, 3069, 3733
FblI	GTMKAC	3 cut(s)	1681, 2066, 2987
FriOI	GRGCYC	4 cut(s)	269, 766, 2483, 3657
FspBI	CTAG	8 cut(s)	120, 474, 572, 947, 2226, 3470, 3554, 3716
GlaI	GCGC	2 cut(s)	107, 1511
GsaI	CCCAGC	2 cut(s)	2235, 4045
GsuI	CTGGAG	2 cut(s)	728, 3172
HapII	CCGG	6 cut(s)	142, 151, 177, 316, 2625, 3755
HgaI	GACGC	1 cut(s)	2900
HhaI	GCGC	2 cut(s)	108, 1512
Hin1I	GRCGYC	1 cut(s)	2911
Hin6I	GCGC	2 cut(s)	106, 1510
HinP1I	GCGC	2 cut(s)	106, 1510
HincII	GTYRAC	1 cut(s)	3589
HindII	GTYRAC	1 cut(s)	3589
HindIII	AAGCTT	2 cut(s)	756, 1514
HpaII	CCGG	6 cut(s)	142, 151, 177, 316, 2625, 3755
Hpy188III	TCNNGA	9 cut(s)	240, 662, 1368, 1732, 2226, 2772, 3844, 3889, 3914
Hpy99I	CGWCG	7 cut(s)	176, 198, 1997, 2018, 2347, 2350, 2418
HpyCH4III	ACNGT	9 cut(s)	99, 456, 1393, 2251, 2450, 2622, 3052, 3117, 3355
HpyCH4IV	ACGT	6 cut(s)	234, 672, 1120, 2042, 2280, 2348
HpySE526I	ACGT	6 cut(s)	234, 672, 1120, 2042, 2280, 2348
Hsp92I	GRCGYC	1 cut(s)	2911
HspAI	GCGC	2 cut(s)	106, 1510
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	4 cut(s)	718, 1914, 3069, 3733
LguI	GCTCTTC	1 cut(s)	3391
LmnI	GCTCC	8 cut(s)	5, 318, 769, 835, 1351, 2478, 3191, 3686
MabI	ACCWGGT	1 cut(s)	3559
MaeI	CTAG	8 cut(s)	120, 474, 572, 947, 2226, 3470, 3554, 3716
MaeII	ACGT	6 cut(s)	234, 672, 1120, 2042, 2280, 2348
MfeI	CAATTG	1 cut(s)	2687
MhlI	GDGCHC	6 cut(s)	269, 766, 2166, 2483, 2842, 3657
MluI	ACGCGT	1 cut(s)	1971
MlyI	GAGTC	3 cut(s)	1328, 1881, 2642
Mph1103I	ATGCAT	2 cut(s)	3016, 4216
MroNI	GCCGGC	1 cut(s)	176
MroXI	GAANNNNTTC	2 cut(s)	1642, 2009
MslI	CAYNNNNRTG	4 cut(s)	1036, 2610, 2796, 3773
MspA1I	CMGCKG	3 cut(s)	1934, 3839, 4018
MspI	CCGG	6 cut(s)	142, 151, 177, 316, 2625, 3755
MspR9I	CCNGG	8 cut(s)	185, 303, 812, 1143, 1877, 2443, 3058, 3561
MunI	CAATTG	1 cut(s)	2687
Mva1269I	GAATGC	4 cut(s)	568, 1031, 2970, 4045
MvaI	CCWGG	8 cut(s)	185, 303, 812, 1143, 1877, 2443, 3058, 3561
MvnI	CGCG	3 cut(s)	106, 1973, 2485
NaeI	GCCGGC	1 cut(s)	178
NcoI	CCATGG	2 cut(s)	1474, 2052
NdeI	CATATG	2 cut(s)	3668, 3772
NgoMIV	GCCGGC	1 cut(s)	176
NlaIV	GGNNCC	7 cut(s)	7, 267, 268, 320, 765, 2480, 3688
NmeAIII	GCCGAG	2 cut(s)	1895, 1902
NmuCI	GTSAC	6 cut(s)	99, 1592, 2038, 2932, 3268, 3775
NsiI	ATGCAT	2 cut(s)	3016, 4216
NspI	RCATGY	2 cut(s)	1748, 3497
OliI	CACNNNNGTG	1 cut(s)	3773
PaeI	GCATGC	2 cut(s)	1748, 3497
PagI	TCATGA	1 cut(s)	1731
PasI	CCCWGGG	1 cut(s)	302
PceI	AGGCCT	3 cut(s)	1880, 2879, 3873
PciSI	GCTCTTC	1 cut(s)	3391
PcsI	WCGNNNNNNNCGW	2 cut(s)	202, 1126
PctI	GAATGC	4 cut(s)	568, 1031, 2970, 4045
PdiI	GCCGGC	1 cut(s)	178
PdmI	GAANNNNTTC	2 cut(s)	1642, 2009
PfeI	GAWTC	7 cut(s)	1467, 2602, 2849, 3251, 3332, 3437, 4147
PfoI	TCCNGGA	1 cut(s)	2441
Ple19I	CGATCG	1 cut(s)	378
PleI	GAGTC	3 cut(s)	1327, 1880, 2641
PmaCI	CACGTG	1 cut(s)	2043
PmlI	CACGTG	1 cut(s)	2043
PpsI	GAGTC	3 cut(s)	1327, 1880, 2641
Ppu21I	YACGTR	2 cut(s)	2043, 2281
PshAI	GACNNNNGTC	1 cut(s)	454
PshBI	ATTAAT	2 cut(s)	1158, 2784
Psp6I	CCWGG	8 cut(s)	183, 301, 810, 1141, 1875, 2441, 3056, 3559
PspCI	CACGTG	1 cut(s)	2043
PspFI	CCCAGC	2 cut(s)	2231, 4041
PspGI	CCWGG	8 cut(s)	183, 301, 810, 1141, 1875, 2441, 3056, 3559
PspN4I	GGNNCC	7 cut(s)	7, 267, 268, 320, 765, 2480, 3688
PspOMI	GGGCCC	1 cut(s)	265
PstI	CTGCAG	4 cut(s)	448, 807, 1533, 3932
PstNI	CAGNNNCTG	2 cut(s)	2008, 4127
PvuI	CGATCG	1 cut(s)	378
PvuII	CAGCTG	2 cut(s)	3839, 4018
RseI	CAYNNNNRTG	4 cut(s)	1036, 2610, 2796, 3773
SapI	GCTCTTC	1 cut(s)	3391
ScaI	AGTACT	1 cut(s)	619
SchI	GAGTC	3 cut(s)	1328, 1881, 2642
ScrFI	CCNGG	8 cut(s)	185, 303, 812, 1143, 1877, 2443, 3058, 3561
SduI	GDGCHC	6 cut(s)	269, 766, 2166, 2483, 2842, 3657
SexAI	ACCWGGT	1 cut(s)	3559
SfcI	CTRYAG	6 cut(s)	444, 803, 1529, 1848, 3051, 3928
SinI	GGWCC	5 cut(s)	187, 449, 2046, 3519, 4200
SmiMI	CAYNNNNRTG	4 cut(s)	1036, 2610, 2796, 3773
SmlI	CTYRAG	4 cut(s)	662, 2165, 2899, 4175
SmoI	CTYRAG	4 cut(s)	662, 2165, 2899, 4175
SpeI	ACTAGT	2 cut(s)	946, 3715
SphI	GCATGC	2 cut(s)	1748, 3497
SseBI	AGGCCT	3 cut(s)	1880, 2879, 3873
SspI	AATATT	1 cut(s)	745
SspMI	CTAG	8 cut(s)	120, 474, 572, 947, 2226, 3470, 3554, 3716
StuI	AGGCCT	3 cut(s)	1880, 2879, 3873
StyD4I	CCNGG	8 cut(s)	183, 301, 810, 1141, 1875, 2441, 3056, 3559
StyI	CCWWGG	5 cut(s)	1182, 1426, 1474, 2052, 3874
TaaI	ACNGT	9 cut(s)	99, 456, 1393, 2251, 2450, 2622, 3052, 3117, 3355
TaiI	ACGT	6 cut(s)	237, 675, 1123, 2045, 2283, 2351
TaqI	TCGA	8 cut(s)	378, 613, 753, 851, 1992, 2013, 2342, 4059
TaqII	GACCGA	2 cut(s)	157, 2702
TatI	WGTACW	5 cut(s)	617, 1650, 1830, 2151, 3288
TauI	GCSGC	3 cut(s)	42, 60, 1869
TfiI	GAWTC	7 cut(s)	1467, 2602, 2849, 3251, 3332, 3437, 4147
TscAI	CASTG	8 cut(s)	1591, 1868, 2254, 2664, 3055, 3120, 3358, 3715
TseFI	GTSAC	6 cut(s)	99, 1592, 2038, 2932, 3268, 3775
Tsp45I	GTSAC	6 cut(s)	99, 1592, 2038, 2932, 3268, 3775
TspGWI	ACGGA	4 cut(s)	182, 838, 998, 1338
TspRI	CASTG	8 cut(s)	1591, 1868, 2254, 2664, 3055, 3120, 3358, 3715
VneI	GTGCAC	1 cut(s)	2838
VpaK11BI	GGWCC	5 cut(s)	187, 449, 2046, 3519, 4200
VspI	ATTAAT	2 cut(s)	1158, 2784
XapI	RAATTY	8 cut(s)	590, 931, 1081, 1628, 2495, 2677, 2758, 3985
XbaI	TCTAGA	1 cut(s)	2225
XceI	RCATGY	2 cut(s)	1748, 3497
XcmI	CCANNNNNNNNNTGG	2 cut(s)	931, 1761
XmiI	GTMKAC	3 cut(s)	1681, 2066, 2987
XmnI	GAANNNNTTC	2 cut(s)	1642, 2009
XspI	CTAG	8 cut(s)	120, 474, 572, 947, 2226, 3470, 3554, 3716
ZrmI	AGTACT	1 cut(s)	619
Zsp2I	ATGCAT	2 cut(s)	3016, 4216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.