AT4G08810

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015924
Physical Location & Seq
Reverse (-)
5615921 .. 5618066
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08810.1

Sequence Viewer

Length: 1659 bp
ATGAAGGAATCAGATCTAACCACCGAACCAATCGCACAAAATCTAATCAAGCTAATAAGCAATGTCTGTTTCTCAGTCTTCGTTTTCACAGTTCTCATCTTCACAGTAATCGCAGTAACTTACCAACCACCAGATCCATGGCTTGAATCTGCTCCAGCACTCACCAAACTCCTAACCGAAACCGAAAACGCAACTTTCAAAATCGACGGTTCGATTCTCAAAACCGGCGAAGATCTCGCTTCATCTCCGTCATCATCACCTCCGTCGAACTCCACAGAGCAAGTCACGGAGGCGACGATTGAGAAATCCGAGGCGAAAATCGGTAATATGACTGTGAAGAACTCTATAGATTGTGATGAGGATTTGAAGATTGTGAATTGTTCTGATCCGAGAGTTTTAGTTGCTGTTGAGAGGTTTAATTTGAAGGTTTTTAAATCTATTGTGTTCTTAGAGTACGAAACTCCGGTTAACGGATCGAAACTAGACGAATGCGATGTTTCTTGGAGGTTTAGGAATAAGAAGGAGAAGTCATGGAGGAGATACAGAGATTTCAGGAGGTTTAGGTTTGGATTTGGTGAGAATTGTACTTATAAAGTGTTTCATACTAGTGGTTGGCATTCTGGTGTTAATGCTCGTAGGCCTAGGATTAGTAGACCGAGCTCGAGTCGAGGAGCTCGCGGTGGTGATTCGGAGATTAATGATACGATTCCGACTCTTGGTTCGCAGACGAGTTTCCGGAGAGGGAAGTATTTGTATTATTCGCGGGGTGGTGATTATTGTAAGGGTATGAATCAGTATATGTGGAGTTTCTTGTGTGGTTTAGGTGAAGCAATGTATTTGAATAGGACTTTTGTGATGGATTTGAGTTTGTGTTTGTCTTCGAGTTATAGTTCTAAGGGGAAAGATGAGGAAGGTAAGGATTTTCGGTATTATTTTGATTTCGAGCATCTTAAGGAGACGGCTTCGATTGTTGAAGAGGGTGAGTTCTTGAGAGATTGGAAGAAATGGAATCGGTTGCATAAACGGAAAGTTCCTGTTAGGAAGGTTAAGACGCATAGAGTGTCGCCTTTGCAGCTTAGTAAAGATAAGAGTACGATTATATGGAGGCAGTTTGATACTCCTGAGCCTGAAAACTATTGGTATAGAGTTTGTGAAGGGCAAGCATCGAAGTATGTTGAGAGGCCGTGGCATGCGTTGTGGAAGTCGAAGAGGTTGATGAATATTGTCTCTGAGATTAGTGGGAAAATGGACTGGGATTTTGATGCTGTTCATGTGGTTAGAGGCGAGAAAGCGAAGAACAAGAAGCTATGGCCACATTTGGATGCAGACACATGGCCTGATGCGATATTGACCAAACTTAAAGGATTGGTTCAGGTGTGGAGGAATTTGTACGTTGCAACTAATGAACCGTTTTATAATTACTTTGACAAGTTGAGGTCTCAGTACAAGGTTCACTTGCTTGATGACTATAGCTACTTGTGGGGAAATAAGAGTGAATGGTACAATGAGACTAGTCTCTTGAACAATGGGAAACCAGTTGAGTTTGATGGGTACATGAGAGTAGCTGTTGATACAGAGGTGTTTTATAGAGGAAAGACTCGCGTCGAGACGTTCTATAACCTTACCACGGACTGCAAAGACGGGATCAATACATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

552

Amino Acids

64.19

Weight (kDa)

8.83

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7074 PF23269 124 - 207 6.9e-36 Domain of unknown function (DUF7074)
DUF7075 PF23272 244 - 537 2.7e-66 Domain of unknown function (DUF7075)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08810
fragaria_vesca FvH4_3g45390
malus_domestica MD03G1005400.v1.1 MD11G1008000.v1.1
prunus_persica Prupe.6G005200_v2.0.a1
pyrus_communis pycom03g00560
rosa_chinensis RchiOBHm_Chr5g0083201
rosa_laevigata RLG00000037016
rosa_roxburghii Rroxscaffold_1G00001300
rosa_rugosa Rorug05G0483200.1
rosa_samantha Rh5AG532600 Rh5BG559800 Rh5CG582500 Rh5DG569000
rosa_wichuraiana Rw5G050040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 591, 1416
AccI GTMKAC 1 cut(s) 652
AccII CGCG 3 cut(s) 678, 763, 1602
AccIII TCCGGA 1 cut(s) 735
AciI CCGC 2 cut(s) 678, 763
AclWI GGATC 4 cut(s) 128, 380, 481, 1652
AcoI YGGCCR 1 cut(s) 1310
AcsI RAATTY 1 cut(s) 1384
AfaI GTAC 7 cut(s) 455, 586, 1093, 1391, 1445, 1502, 1553
AfiI CCNNNNNNNGG 3 cut(s) 470, 716, 1627
AflII CTTAAG 1 cut(s) 950
AgsI TTSAA 7 cut(s) 146, 199, 367, 424, 841, 974, 1522
AhlI ACTAGT 2 cut(s) 605, 1511
AluBI AGCT 7 cut(s) 52, 660, 674, 1075, 1306, 1473, 1565
AluI AGCT 7 cut(s) 52, 660, 674, 1075, 1306, 1473, 1565
Alw21I GWGCWC 2 cut(s) 662, 676
Alw26I GTCTC 6 cut(s) 950, 1231, 1443, 1502, 1520, 1601
AlwI GGATC 4 cut(s) 128, 380, 481, 1652
Ama87I CYCGRG 1 cut(s) 661
Aor13HI TCCGGA 1 cut(s) 735
AoxI GGCC 4 cut(s) 638, 1181, 1310, 1334
ApeKI GCWGC 1 cut(s) 1072
ApoI RAATTY 1 cut(s) 1384
ArsI GACNNNNNNTTYG 4 cut(s) 703, 735, 1241, 1273
AseI ATTAAT 1 cut(s) 696
AspA2I CCTAGG 1 cut(s) 641
AsuHPI GGTGA 7 cut(s) 154, 249, 587, 695, 782, 836, 992
AvaI CYCGRG 1 cut(s) 661
AvrII CCTAGG 1 cut(s) 641
BaeI ACNNNNGTAYC 2 cut(s) 1563, 1596
BalI TGGCCA 1 cut(s) 1312
BanII GRGCYC 2 cut(s) 662, 676
BbsI GAAGAC 2 cut(s) 70, 870
Bbv12I GWGCWC 2 cut(s) 662, 676
BbvI GCAGC 1 cut(s) 1084
BccI CCATC 2 cut(s) 850, 1541
BceAI ACGGC 2 cut(s) 975, 1168
BcoDI GTCTC 6 cut(s) 950, 1231, 1443, 1502, 1520, 1601
BcuI ACTAGT 2 cut(s) 605, 1511
BfaI CTAG 4 cut(s) 482, 606, 642, 1512
BfmI CTRYAG 2 cut(s) 345, 1468
BfrI CTTAAG 1 cut(s) 950
BglII AGATCT 2 cut(s) 13, 232
BisI GCNGC 1 cut(s) 1073
BlnI CCTAGG 1 cut(s) 641
BlsI GCNGC 1 cut(s) 1074
BmeT110I CYCGRG 1 cut(s) 661
BmrI ACTGGG 1 cut(s) 1261
BmsI GCATC 5 cut(s) 955, 1172, 1252, 1312, 1330
BmuI ACTGGG 1 cut(s) 1261
BoxI GACNNNNGTC 1 cut(s) 1601
BpiI GAAGAC 2 cut(s) 70, 870
BpmI CTGGAG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 1122
BpuEI CTTGAG 1 cut(s) 1009
BsaI GGTCTC 1 cut(s) 1443
BsaJI CCNNGG 5 cut(s) 137, 309, 641, 1184, 1626
BsaWI WCCGGW 2 cut(s) 463, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 470, 716, 1627
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 1256, 1535
Bse3DI GCAATG 2 cut(s) 67, 837
BseAI TCCGGA 1 cut(s) 735
BseDI CCNNGG 5 cut(s) 137, 309, 641, 1184, 1626
BseGI GGATG 1 cut(s) 1327
BseLI CCNNNNNNNGG 3 cut(s) 470, 716, 1627
BseMI GCAATG 2 cut(s) 67, 837
BseMII CTCAG 4 cut(s) 87, 1113, 1221, 1454
BseNI ACTGG 2 cut(s) 1256, 1535
BseRI GAGGAG 2 cut(s) 550, 684
BseXI GCAGC 1 cut(s) 1084
Bsh1236I CGCG 3 cut(s) 678, 763, 1602
BshFI GGCC 4 cut(s) 640, 1183, 1312, 1336
BsiHKAI GWGCWC 2 cut(s) 662, 676
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 3 cut(s) 225, 464, 736
BslI CCNNNNNNNGG 3 cut(s) 470, 716, 1627
BsmAI GTCTC 6 cut(s) 950, 1231, 1443, 1502, 1520, 1601
BsmBI CGTCTC 2 cut(s) 950, 1601
BsmI GAATGC 2 cut(s) 494, 616
BsnI GGCC 4 cut(s) 640, 1183, 1312, 1336
Bso31I GGTCTC 1 cut(s) 1443
BsoBI CYCGRG 1 cut(s) 661
Bsp1286I GDGCHC 2 cut(s) 662, 676
Bsp13I TCCGGA 1 cut(s) 735
Bsp143I GATC 6 cut(s) 13, 133, 232, 385, 473, 1644
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 2 cut(s) 678, 763
BspANI GGCC 4 cut(s) 640, 1183, 1312, 1336
BspCNI CTCAG 4 cut(s) 86, 1114, 1222, 1453
BspEI TCCGGA 1 cut(s) 735
BspFNI CGCG 3 cut(s) 678, 763, 1602
BspPI GGATC 4 cut(s) 128, 380, 481, 1652
BspTI CTTAAG 1 cut(s) 950
BspTNI GGTCTC 1 cut(s) 1443
BsrDI GCAATG 2 cut(s) 67, 837
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 2 cut(s) 1256, 1535
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 5 cut(s) 137, 309, 641, 1184, 1626
BssMI GATC 6 cut(s) 13, 133, 232, 385, 473, 1644
BssT1I CCWWGG 2 cut(s) 137, 641
Bst4CI ACNGT 5 cut(s) 91, 106, 209, 334, 1410
Bst6I CTCTTC 2 cut(s) 969, 1202
BstAFI CTTAAG 1 cut(s) 950
BstC8I GCNNGC 3 cut(s) 676, 1161, 1191
BstDEI CTNAG 7 cut(s) 73, 448, 894, 1076, 1122, 1230, 1440
BstDSI CCRYGG 3 cut(s) 137, 1184, 1626
BstF5I GGATG 1 cut(s) 1327
BstFNI CGCG 3 cut(s) 678, 763, 1602
BstKTI GATC 6 cut(s) 16, 136, 235, 388, 476, 1647
BstMAI GTCTC 6 cut(s) 950, 1231, 1443, 1502, 1520, 1601
BstMBI GATC 6 cut(s) 13, 133, 232, 385, 473, 1644
BstMWI GCNNNNNNNGC 1 cut(s) 1072
BstNSI RCATGY 2 cut(s) 1193, 1656
BstPAI GACNNNNGTC 1 cut(s) 1601
BstSFI CTRYAG 2 cut(s) 345, 1468
BstUI CGCG 3 cut(s) 678, 763, 1602
BstV1I GCAGC 1 cut(s) 1084
BstV2I GAAGAC 2 cut(s) 70, 870
BstX2I RGATCY 3 cut(s) 13, 133, 232
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 3 cut(s) 13, 133, 232
BsuRI GGCC 4 cut(s) 640, 1183, 1312, 1336
BtgI CCRYGG 3 cut(s) 137, 1184, 1626
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 1 cut(s) 1327
Cac8I GCNNGC 3 cut(s) 676, 1161, 1191
Cfr10I RCCGGY 1 cut(s) 224
CseI GACGC 2 cut(s) 1060, 1591
Csp6I GTAC 7 cut(s) 454, 585, 1092, 1390, 1444, 1501, 1552
CviAII CATG 7 cut(s) 138, 531, 1190, 1271, 1332, 1555, 1653
CviQI GTAC 7 cut(s) 454, 585, 1092, 1390, 1444, 1501, 1552
DdeI CTNAG 7 cut(s) 73, 448, 894, 1076, 1122, 1230, 1440
DpnI GATC 6 cut(s) 15, 135, 234, 387, 475, 1646
DpnII GATC 6 cut(s) 13, 133, 232, 385, 473, 1644
DraI TTTAAA 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 1310
Eam1104I CTCTTC 2 cut(s) 969, 1202
EarI CTCTTC 2 cut(s) 969, 1202
Ecl136II GAGCTC 2 cut(s) 660, 674
Eco130I CCWWGG 2 cut(s) 137, 641
Eco147I AGGCCT 1 cut(s) 640
Eco24I GRGCYC 2 cut(s) 662, 676
Eco31I GGTCTC 1 cut(s) 1443
Eco53kI GAGCTC 2 cut(s) 660, 674
Eco88I CYCGRG 1 cut(s) 661
EcoICRI GAGCTC 2 cut(s) 660, 674
EcoT14I CCWWGG 2 cut(s) 137, 641
EcoT38I GRGCYC 2 cut(s) 662, 676
ErhI CCWWGG 2 cut(s) 137, 641
Esp3I CGTCTC 2 cut(s) 950, 1601
FaeI CATG 7 cut(s) 141, 534, 1193, 1274, 1335, 1558, 1656
FalI AAGNNNNNCTT 2 cut(s) 1439, 1471
FatI CATG 7 cut(s) 137, 530, 1189, 1270, 1331, 1554, 1652
FauI CCCGC 1 cut(s) 756
FblI GTMKAC 1 cut(s) 652
Fnu4HI GCNGC 1 cut(s) 1073
FokI GGATG 1 cut(s) 1334
FriOI GRGCYC 2 cut(s) 662, 676
Fsp4HI GCNGC 1 cut(s) 1073
FspBI CTAG 4 cut(s) 482, 606, 642, 1512
GluI GCNGC 1 cut(s) 1073
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 4 cut(s) 640, 1183, 1312, 1336
HapII CCGG 3 cut(s) 225, 464, 736
HgaI GACGC 2 cut(s) 1060, 1591
Hin1II CATG 7 cut(s) 141, 534, 1193, 1274, 1335, 1558, 1656
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 3 cut(s) 225, 464, 736
HphI GGTGA 7 cut(s) 154, 249, 587, 695, 782, 836, 992
Hpy166II GTNNAC 3 cut(s) 469, 653, 1453
Hpy188I TCNGA 7 cut(s) 13, 310, 385, 390, 691, 711, 1231
Hpy188III TCNNGA 6 cut(s) 553, 736, 988, 1121, 1519, 1606
Hpy8I GTNNAC 3 cut(s) 469, 653, 1453
Hpy99I CGWCG 4 cut(s) 209, 268, 298, 1607
HpyAV CCTTC 5 cut(s) 418, 514, 905, 1036, 1148
HpyCH4III ACNGT 5 cut(s) 91, 106, 209, 334, 1410
HpyCH4IV ACGT 2 cut(s) 1392, 1610
HpyCH4V TGCA 5 cut(s) 1018, 1072, 1325, 1397, 1635
HpyF10VI GCNNNNNNNGC 1 cut(s) 1072
HpyF3I CTNAG 7 cut(s) 73, 448, 894, 1076, 1122, 1230, 1440
HpySE526I ACGT 2 cut(s) 1392, 1610
Hsp92II CATG 7 cut(s) 141, 534, 1193, 1274, 1335, 1558, 1656
Kpn2I TCCGGA 1 cut(s) 735
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 6 cut(s) 13, 133, 232, 385, 473, 1644
LmnI GCTCC 2 cut(s) 157, 671
Lsp1109I GCAGC 1 cut(s) 1084
LweI GCATC 5 cut(s) 955, 1172, 1252, 1312, 1330
MaeI CTAG 4 cut(s) 482, 606, 642, 1512
MaeII ACGT 2 cut(s) 1392, 1610
MaeIII GTNAC 2 cut(s) 115, 283
MalI GATC 6 cut(s) 15, 135, 234, 387, 475, 1646
MboI GATC 6 cut(s) 13, 133, 232, 385, 473, 1644
MflI RGATCY 3 cut(s) 13, 133, 232
MhlI GDGCHC 2 cut(s) 662, 676
MlsI TGGCCA 1 cut(s) 1312
MluCI AATT 5 cut(s) 376, 418, 580, 1384, 1417
MluNI TGGCCA 1 cut(s) 1312
MlyI GAGTC 3 cut(s) 673, 706, 1591
MmeI TCCRAC 1 cut(s) 734
Mox20I TGGCCA 1 cut(s) 1312
MroI TCCGGA 1 cut(s) 735
MscI TGGCCA 1 cut(s) 1312
MseI TTAA 8 cut(s) 417, 432, 468, 627, 696, 951, 1047, 1359
MslI CAYNNNNRTG 3 cut(s) 606, 621, 1320
Msp20I TGGCCA 1 cut(s) 1312
MspCI CTTAAG 1 cut(s) 950
MspI CCGG 3 cut(s) 225, 464, 736
Mva1269I GAATGC 2 cut(s) 494, 616
MvnI CGCG 3 cut(s) 678, 763, 1602
MwoI GCNNNNNNNGC 1 cut(s) 1072
NcoI CCATGG 1 cut(s) 137
NdeII GATC 6 cut(s) 13, 133, 232, 385, 473, 1644
NlaIII CATG 7 cut(s) 141, 534, 1193, 1274, 1335, 1558, 1656
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 2 cut(s) 1193, 1656
PaeI GCATGC 1 cut(s) 1193
PaeR7I CTCGAG 1 cut(s) 661
PceI AGGCCT 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PctI GAATGC 2 cut(s) 494, 616
PfeI GAWTC 7 cut(s) 8, 146, 214, 686, 706, 790, 1009
PkrI GCNGC 1 cut(s) 1074
PleI GAGTC 3 cut(s) 672, 706, 1591
PpsI GAGTC 3 cut(s) 672, 706, 1591
PshAI GACNNNNGTC 1 cut(s) 1601
PshBI ATTAAT 1 cut(s) 696
PsiI TTATAA 2 cut(s) 591, 1416
Psp124BI GAGCTC 2 cut(s) 662, 676
PspXI VCTCGAGB 1 cut(s) 661
PsuI RGATCY 3 cut(s) 13, 133, 232
RsaI GTAC 7 cut(s) 455, 586, 1093, 1391, 1445, 1502, 1553
RsaNI GTAC 7 cut(s) 454, 585, 1092, 1390, 1444, 1501, 1552
RseI CAYNNNNRTG 3 cut(s) 606, 621, 1320
SacI GAGCTC 2 cut(s) 662, 676
SaqAI TTAA 8 cut(s) 417, 432, 468, 627, 696, 951, 1047, 1359
SatI GCNGC 1 cut(s) 1073
Sau3AI GATC 6 cut(s) 13, 133, 232, 385, 473, 1644
SchI GAGTC 3 cut(s) 673, 706, 1591
SduI GDGCHC 2 cut(s) 662, 676
SfaNI GCATC 5 cut(s) 955, 1172, 1252, 1312, 1330
SfcI CTRYAG 2 cut(s) 345, 1468
Sfr274I CTCGAG 1 cut(s) 661
SlaI CTCGAG 1 cut(s) 661
SmiMI CAYNNNNRTG 3 cut(s) 606, 621, 1320
SmlI CTYRAG 3 cut(s) 661, 950, 988
SmoI CTYRAG 3 cut(s) 661, 950, 988
SpeI ACTAGT 2 cut(s) 605, 1511
SphI GCATGC 1 cut(s) 1193
Sse9I AATT 5 cut(s) 376, 418, 580, 1384, 1417
SseBI AGGCCT 1 cut(s) 640
SsiI CCGC 2 cut(s) 678, 763
SspI AATATT 1 cut(s) 1222
SspMI CTAG 4 cut(s) 482, 606, 642, 1512
SstI GAGCTC 2 cut(s) 662, 676
StuI AGGCCT 1 cut(s) 640
StyI CCWWGG 2 cut(s) 137, 641
TaaI ACNGT 5 cut(s) 91, 106, 209, 334, 1410
TaiI ACGT 2 cut(s) 1395, 1613
TaqII GACCGA 1 cut(s) 670
TasI AATT 5 cut(s) 376, 418, 580, 1384, 1417
TatI WGTACW 2 cut(s) 584, 1443
TfiI GAWTC 7 cut(s) 8, 146, 214, 686, 706, 790, 1009
Tru1I TTAA 8 cut(s) 417, 432, 468, 627, 696, 951, 1047, 1359
Tru9I TTAA 8 cut(s) 417, 432, 468, 627, 696, 951, 1047, 1359
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 1072
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 7 cut(s) 17, 231, 590, 803, 1232, 1259, 1419
TspGWI ACGGA 6 cut(s) 237, 252, 302, 486, 1039, 1643
Vha464I CTTAAG 1 cut(s) 950
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 1 cut(s) 1384
XceI RCATGY 2 cut(s) 1193, 1656
XcmI CCANNNNNNNNNTGG 1 cut(s) 135
XhoI CTCGAG 1 cut(s) 661
XmaJI CCTAGG 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 652
XspI CTAG 4 cut(s) 482, 606, 642, 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.