AT4G10620

50S ribosome-binding GTPase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
6564183 .. 6566504
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10620.1

Sequence Viewer

Length: 1794 bp
ATGCTTTCGAAAGCAGCAAGAGAGCTTTCATCATCAAAGCTTAAACCTTTATTCGCTCTTCATCTCTCTTCCTTCAAATCTTCCATACCCACTAAACCAAACCCTTCTCCTCCTTCATATCTCAATCCCCACCACTTCAACAATATCTCAAAACCGCCATTTTTGCGTTTCTACTCTTCTTCTTCGTCCTCTAATCTCCTTCCGCTAAACAGAGATGGGAATTACAACGATACAACTTCAATCACAATCTCCGTTTGCCCAGGTTGTGGAGTTCATATGCAAAACTCAAACCCAAAACATCCAGGTTTCTTCATCAAACCATCAACAGAGAAACAGAGGAACGATTTGAATCTTCGTGATCTCACACCCATCTCTCAAGAGCCTGAATTTATAGATTCAATCAAACGAGGGTTTATCATTGAACCAATCAGTAGTTCTGACTTAAACCCTAGAGATGATGAACCATCAGATTCAAGACCATTGGTTTGTGCTAGGTGTCATTCACTTAGACATTACGGGAGAGTGAAAGATCCAACGGTTGAGAATCTTCTTCCTGATTTTGATTTTGATCATACTGTTGGTAGGAGACTAGGTTCAGCTTCTGGTGCTAGAACTGTTGTGTTGATGGTTGTTGATGCTTCAGATTTCGATGGTTCTTTTCCTAAGAGGGTAGCTAAGCTTGTGTCGAGAACTATTGATGAGAATAATATGGCTTGGAAAGAAGGGAAGTCTGGTAATGTACCTAGAGTTGTTGTTGTTGTGACTAAGATTGATTTGTTACCGAGTTCGTTGTCTCCTAATAGGTTTGAGCAATGGGTTAGATTAAGAGCTCGTGAAGGTGGTTTAAGTAAGATTACTAAGTTGCATTTTGTTAGTCCTGTTAAGAATTGGGGGATTAAGGATTTGGTTGAAGATGTGGCTGCTATGGCTGGGAAGAGAGGTCATGTTTGGGCTGTTGGATCGCAGAATGCCGGAAAAAGTACGTTGATTAATGCTGTTGGGAAGGTTGTTGGTGGGAAAGTTTGGCATTTGACGGAAGCTCCTGTGCCGGGAACTACGTTGGGGATAATTAGGATTGAAGGTGTTTTGCCTTTTGAGGCTAAGTTGTTTGATACTCCGGGGCTGTTGAATCCGCATCAGATCACTACGAGGCTTACGAGAGAGGAGCAGAGACTTGTTCATATTAGCAAGGAGCTTAAACCAAGGACTTATAGGATCAAGGAAGGTTATACGGTTCACATTGGTGGGCTAATGAGACTTGACATTGATGAAGCATCTGTTGATTCTCTATATGTGACAGTTTGGGCGTCTCCTTATGTTCCACTTCACATGGGGAAGAAGGAGAATGCTTACAAAACACTCGAGGACCATTTCGGTTGTCGATTGCAGCCGCCGATTGGAGAGAAGCGGGTTGAAGAGTTGGGGAAATGGGTTAGAAAGGAATTCCGAGTGAGTGGAACCAGTTGGGACACAAGTTCAGTAGATATAGCTGTTTCAGGTCTCGGTTGGTTTGCGTTAGGACTAAAAGGAGACGCGATTTTAGGTGTATGGACTCACGAGGGGATTGATGTCTTCTGCCGTGACTCATTGCTCCCGCAACGAGCACACACTTTTGAAGACTCTGGATTCACTGTCTCCAAGATCGTTGCCAAAGCTGATAGAAATTTTAACCAAATTCACAAGGAGGAAACACAGAAGAAACGAAAACCCAACAAGTCTTTTTCAGATTCTGTATCTGACAGAGACAATAGCCGCGAGGTGTCACAGCCTTCAGATATCTTACCAACAATGTGA

Protein Analysis

597

Amino Acids

66.49

Weight (kDa)

9.32

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 316 - 388 6.9e-08 50S ribosome-binding GTPase
YqeH-like_C PF21516 432 - 530 2.2e-11 YqeH-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 266
AccII CGCG 2 cut(s) 1535, 1755
AciI CCGC 7 cut(s) 155, 203, 1133, 1391, 1408, 1595, 1753
AclWI GGATC 3 cut(s) 524, 967, 1223
AcsI RAATTY 4 cut(s) 386, 1442, 1663, 1674
AcuI CTGAAG 2 cut(s) 624, 1755
AcyI GRCGYC 1 cut(s) 1307
AfaI GTAC 2 cut(s) 741, 982
AfiI CCNNNNNNNGG 3 cut(s) 266, 1049, 1397
AjnI CCWGG 2 cut(s) 259, 301
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AleI CACNNNNGTG 1 cut(s) 1242
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
Alw21I GWGCWC 2 cut(s) 832, 1606
Alw26I GTCTC 9 cut(s) 580, 798, 1165, 1249, 1314, 1505, 1524, 1639, 1737
AlwI GGATC 3 cut(s) 524, 967, 1223
AlwNI CAGNNNCTG 2 cut(s) 602, 1730
Ama87I CYCGRG 1 cut(s) 1361
ApeKI GCWGC 3 cut(s) 14, 920, 1387
ApoI RAATTY 4 cut(s) 386, 1442, 1663, 1674
ArsI GACNNNNNNTTYG 2 cut(s) 468, 500
AseI ATTAAT 1 cut(s) 990
AspS9I GGNCC 1 cut(s) 1366
AsuC2I CCSGG 2 cut(s) 1050, 1119
AsuII TTCGAA 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 1361
AvaII GGWCC 1 cut(s) 1366
BanII GRGCYC 1 cut(s) 832
BauI CACGAG 2 cut(s) 831, 1556
BbsI GAAGAC 2 cut(s) 1564, 1623
Bbv12I GWGCWC 2 cut(s) 832, 1606
BbvI GCAGC 3 cut(s) 26, 907, 1399
BccI CCATC 6 cut(s) 209, 328, 377, 472, 619, 644
BceAI ACGGC 1 cut(s) 1563
BciT130I CCWGG 2 cut(s) 261, 303
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 2 cut(s) 1050, 1119
BcoDI GTCTC 9 cut(s) 580, 798, 1165, 1249, 1314, 1505, 1524, 1639, 1737
BfaI CTAG 5 cut(s) 450, 492, 590, 609, 744
BisI GCNGC 5 cut(s) 15, 921, 1388, 1391, 1753
BlpI GCTNAGC 1 cut(s) 675
BlsI GCNGC 5 cut(s) 16, 922, 1389, 1392, 1754
Bme1390I CCNGG 4 cut(s) 261, 303, 1050, 1119
Bme18I GGWCC 1 cut(s) 1366
BmeT110I CYCGRG 1 cut(s) 1361
BmgT120I GGNCC 1 cut(s) 1366
BmiI GGNNCC 1 cut(s) 1459
BmrFI CCNGG 4 cut(s) 261, 303, 1050, 1119
BmsI GCATC 3 cut(s) 625, 1144, 1283
BpiI GAAGAC 2 cut(s) 1564, 1623
Bpu1102I GCTNAGC 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 360
BpuMI CCSGG 2 cut(s) 1050, 1119
BsaBI GATNNNNATC 2 cut(s) 348, 567
BsaHI GRCGYC 1 cut(s) 1307
BsaI GGTCTC 1 cut(s) 1505
BsaJI CCNNGG 3 cut(s) 259, 1118, 1202
BsaXI ACNNNNNCTCC 4 cut(s) 577, 607, 1024, 1054
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 1049, 1397
Bse1I ACTGG 1 cut(s) 1461
Bse3DI GCAATG 2 cut(s) 818, 1586
Bse8I GATNNNNATC 2 cut(s) 348, 567
BseBI CCWGG 2 cut(s) 261, 303
BseDI CCNNGG 3 cut(s) 259, 1118, 1202
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 2 cut(s) 348, 567
BseLI CCNNNNNNNGG 3 cut(s) 266, 1049, 1397
BseMI GCAATG 2 cut(s) 818, 1586
BseNI ACTGG 1 cut(s) 1461
BseRI GAGGAG 2 cut(s) 99, 1178
BseXI GCAGC 3 cut(s) 26, 907, 1399
BseYI CCCAGC 1 cut(s) 929
Bsh1236I CGCG 2 cut(s) 1535, 1755
BsiHKAI GWGCWC 2 cut(s) 832, 1606
BsiHKCI CYCGRG 1 cut(s) 1361
BsiSI CCGG 3 cut(s) 972, 1049, 1118
BslFI GGGAC 1 cut(s) 1481
BslI CCNNNNNNNGG 3 cut(s) 266, 1049, 1397
BsmAI GTCTC 9 cut(s) 580, 798, 1165, 1249, 1314, 1505, 1524, 1639, 1737
BsmBI CGTCTC 2 cut(s) 1314, 1524
BsmFI GGGAC 1 cut(s) 1481
BsmI GAATGC 2 cut(s) 973, 1351
Bso31I GGTCTC 1 cut(s) 1505
BsoBI CYCGRG 1 cut(s) 1361
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 832, 1606
Bsp143I GATC 7 cut(s) 358, 529, 568, 959, 1140, 1215, 1641
Bsp1720I GCTNAGC 1 cut(s) 675
BspACI CCGC 7 cut(s) 155, 203, 1133, 1391, 1408, 1595, 1753
BspFNI CGCG 2 cut(s) 1535, 1755
BspLI GGNNCC 1 cut(s) 1459
BspPI GGATC 3 cut(s) 524, 967, 1223
BspQI GCTCTTC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 1505
BsrDI GCAATG 2 cut(s) 818, 1586
BsrI ACTGG 1 cut(s) 1461
BssECI CCNNGG 3 cut(s) 259, 1118, 1202
BssMI GATC 7 cut(s) 358, 529, 568, 959, 1140, 1215, 1641
BssNI GRCGYC 1 cut(s) 1307
BssSI CACGAG 2 cut(s) 831, 1556
BssT1I CCWWGG 1 cut(s) 1202
Bst2BI CACGAG 2 cut(s) 831, 1556
Bst2UI CCWGG 2 cut(s) 261, 303
Bst4CI ACNGT 6 cut(s) 538, 577, 616, 1234, 1300, 1633
Bst6I CTCTTC 5 cut(s) 63, 73, 181, 929, 1410
BstACI GRCGYC 1 cut(s) 1307
BstBI TTCGAA 1 cut(s) 8
BstDEI CTNAG 6 cut(s) 506, 663, 675, 765, 858, 1101
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 2 cut(s) 1535, 1755
BstKTI GATC 7 cut(s) 361, 532, 571, 962, 1143, 1218, 1644
BstMAI GTCTC 9 cut(s) 580, 798, 1165, 1249, 1314, 1505, 1524, 1639, 1737
BstMBI GATC 7 cut(s) 358, 529, 568, 959, 1140, 1215, 1641
BstMWI GCNNNNNNNGC 3 cut(s) 163, 605, 926
BstNI CCWGG 2 cut(s) 261, 303
BstSCI CCNGG 4 cut(s) 259, 301, 1048, 1117
BstUI CGCG 2 cut(s) 1535, 1755
BstV1I GCAGC 3 cut(s) 26, 907, 1399
BstV2I GAAGAC 2 cut(s) 1564, 1623
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 1629
CaiI CAGNNNCTG 2 cut(s) 602, 1730
Cfr13I GGNCC 1 cut(s) 1366
CseI GACGC 2 cut(s) 1296, 1541
Csp6I GTAC 2 cut(s) 740, 981
CviAII CATG 2 cut(s) 944, 1330
CviQI GTAC 2 cut(s) 740, 981
DdeI CTNAG 6 cut(s) 506, 663, 675, 765, 858, 1101
DpnI GATC 7 cut(s) 360, 531, 570, 961, 1142, 1217, 1643
DpnII GATC 7 cut(s) 358, 529, 568, 959, 1140, 1215, 1641
Eam1104I CTCTTC 5 cut(s) 63, 73, 181, 929, 1410
EarI CTCTTC 5 cut(s) 63, 73, 181, 929, 1410
Ecl136II GAGCTC 1 cut(s) 830
Eco130I CCWWGG 1 cut(s) 1202
Eco24I GRGCYC 1 cut(s) 832
Eco31I GGTCTC 1 cut(s) 1505
Eco32I GATATC 1 cut(s) 1777
Eco47I GGWCC 1 cut(s) 1366
Eco53kI GAGCTC 1 cut(s) 830
Eco57I CTGAAG 2 cut(s) 624, 1755
Eco88I CYCGRG 1 cut(s) 1361
EcoICRI GAGCTC 1 cut(s) 830
EcoRI GAATTC 1 cut(s) 1442
EcoRII CCWGG 2 cut(s) 259, 301
EcoRV GATATC 1 cut(s) 1777
EcoT14I CCWWGG 1 cut(s) 1202
EcoT38I GRGCYC 1 cut(s) 832
ErhI CCWWGG 1 cut(s) 1202
Esp3I CGTCTC 2 cut(s) 1314, 1524
FaeI CATG 2 cut(s) 947, 1333
FaqI GGGAC 1 cut(s) 1481
FatI CATG 2 cut(s) 943, 1329
FauI CCCGC 2 cut(s) 1401, 1602
FauNDI CATATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 5 cut(s) 15, 921, 1388, 1391, 1753
FokI GGATG 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 832
Fsp4HI GCNGC 5 cut(s) 15, 921, 1388, 1391, 1753
FspBI CTAG 5 cut(s) 450, 492, 590, 609, 744
GluI GCNGC 5 cut(s) 15, 921, 1388, 1391, 1753
GsaI CCCAGC 1 cut(s) 933
HapII CCGG 3 cut(s) 972, 1049, 1118
HgaI GACGC 2 cut(s) 1296, 1541
Hin1I GRCGYC 1 cut(s) 1307
Hin1II CATG 2 cut(s) 947, 1333
HindIII AAGCTT 2 cut(s) 38, 677
HpaII CCGG 3 cut(s) 972, 1049, 1118
Hpy166II GTNNAC 1 cut(s) 1237
Hpy188I TCNGA 8 cut(s) 439, 469, 643, 1140, 1448, 1726, 1738, 1774
Hpy188III TCNNGA 8 cut(s) 356, 377, 474, 554, 687, 833, 1556, 1623
Hpy8I GTNNAC 1 cut(s) 1237
HpyCH4III ACNGT 6 cut(s) 538, 577, 616, 1234, 1300, 1633
HpyCH4IV ACGT 2 cut(s) 983, 1058
HpyCH4V TGCA 3 cut(s) 280, 865, 1387
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 605, 926
HpyF3I CTNAG 6 cut(s) 506, 663, 675, 765, 858, 1101
HpySE526I ACGT 2 cut(s) 983, 1058
Hsp92I GRCGYC 1 cut(s) 1307
Hsp92II CATG 2 cut(s) 947, 1333
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 7 cut(s) 358, 529, 568, 959, 1140, 1215, 1641
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 4 cut(s) 1045, 1165, 1192, 1596
Lsp1109I GCAGC 3 cut(s) 26, 907, 1399
LweI GCATC 3 cut(s) 625, 1144, 1283
MaeI CTAG 5 cut(s) 450, 492, 590, 609, 744
MaeII ACGT 2 cut(s) 983, 1058
MaeIII GTNAC 5 cut(s) 760, 777, 1294, 1580, 1761
MalI GATC 7 cut(s) 360, 531, 570, 961, 1142, 1217, 1643
MboI GATC 7 cut(s) 358, 529, 568, 959, 1140, 1215, 1641
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 2 cut(s) 832, 1606
MluCI AATT 7 cut(s) 220, 386, 886, 1068, 1442, 1663, 1674
MlyI GAGTC 3 cut(s) 1546, 1577, 1613
MmeI TCCRAC 2 cut(s) 557, 937
MseI TTAA 9 cut(s) 42, 443, 824, 845, 882, 897, 990, 1197, 1668
MslI CAYNNNNRTG 1 cut(s) 1242
MspI CCGG 3 cut(s) 972, 1049, 1118
MspR9I CCNGG 4 cut(s) 261, 303, 1050, 1119
Mva1269I GAATGC 2 cut(s) 973, 1351
MvaI CCWGG 2 cut(s) 261, 303
MvnI CGCG 2 cut(s) 1535, 1755
MwoI GCNNNNNNNGC 3 cut(s) 163, 605, 926
NciI CCSGG 2 cut(s) 1050, 1119
NdeI CATATG 1 cut(s) 276
NdeII GATC 7 cut(s) 358, 529, 568, 959, 1140, 1215, 1641
NlaIII CATG 2 cut(s) 947, 1333
NlaIV GGNNCC 1 cut(s) 1459
NmuCI GTSAC 4 cut(s) 760, 1294, 1580, 1761
NspV TTCGAA 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 1242
PaeR7I CTCGAG 1 cut(s) 1361
PciSI GCTCTTC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 1154
PctI GAATGC 2 cut(s) 973, 1351
PfeI GAWTC 8 cut(s) 349, 395, 470, 544, 1129, 1283, 1626, 1727
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 5 cut(s) 16, 922, 1389, 1392, 1754
PleI GAGTC 3 cut(s) 1546, 1577, 1613
PpsI GAGTC 3 cut(s) 1546, 1577, 1613
PshBI ATTAAT 1 cut(s) 990
Psp124BI GAGCTC 1 cut(s) 832
Psp6I CCWGG 2 cut(s) 259, 301
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 2 cut(s) 259, 301
PspN4I GGNNCC 1 cut(s) 1459
PspPI GGNCC 1 cut(s) 1366
PspXI VCTCGAGB 1 cut(s) 1361
PstNI CAGNNNCTG 2 cut(s) 602, 1730
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 2 cut(s) 741, 982
RsaNI GTAC 2 cut(s) 740, 981
RseI CAYNNNNRTG 1 cut(s) 1242
SacI GAGCTC 1 cut(s) 832
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 9 cut(s) 42, 443, 824, 845, 882, 897, 990, 1197, 1668
SatI GCNGC 5 cut(s) 15, 921, 1388, 1391, 1753
Sau3AI GATC 7 cut(s) 358, 529, 568, 959, 1140, 1215, 1641
Sau96I GGNCC 1 cut(s) 1366
SchI GAGTC 3 cut(s) 1546, 1577, 1613
ScrFI CCNGG 4 cut(s) 261, 303, 1050, 1119
SduI GDGCHC 2 cut(s) 832, 1606
SfaNI GCATC 3 cut(s) 625, 1144, 1283
Sfr274I CTCGAG 1 cut(s) 1361
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 1366
SlaI CTCGAG 1 cut(s) 1361
SmiMI CAYNNNNRTG 1 cut(s) 1242
SmlI CTYRAG 2 cut(s) 375, 1361
SmoI CTYRAG 2 cut(s) 375, 1361
Sse9I AATT 7 cut(s) 220, 386, 886, 1068, 1442, 1663, 1674
SsiI CCGC 7 cut(s) 155, 203, 1133, 1391, 1408, 1595, 1753
SspMI CTAG 5 cut(s) 450, 492, 590, 609, 744
SstI GAGCTC 1 cut(s) 832
StyD4I CCNGG 4 cut(s) 259, 301, 1048, 1117
StyI CCWWGG 1 cut(s) 1202
TaaI ACNGT 6 cut(s) 538, 577, 616, 1234, 1300, 1633
TaiI ACGT 2 cut(s) 986, 1061
TaqI TCGA 5 cut(s) 8, 648, 686, 1362, 1381
TasI AATT 7 cut(s) 220, 386, 886, 1068, 1442, 1663, 1674
TauI GCSGC 2 cut(s) 1393, 1755
TfiI GAWTC 8 cut(s) 349, 395, 470, 544, 1129, 1283, 1626, 1727
Tru1I TTAA 9 cut(s) 42, 443, 824, 845, 882, 897, 990, 1197, 1668
Tru9I TTAA 9 cut(s) 42, 443, 824, 845, 882, 897, 990, 1197, 1668
TscAI CASTG 1 cut(s) 1636
TseFI GTSAC 4 cut(s) 760, 1294, 1580, 1761
TseI GCWGC 3 cut(s) 14, 920, 1387
Tsp45I GTSAC 4 cut(s) 760, 1294, 1580, 1761
TspDTI ATGAA 8 cut(s) 18, 50, 105, 263, 301, 474, 1169, 1284
TspGWI ACGGA 2 cut(s) 241, 1049
TspRI CASTG 1 cut(s) 1636
Van91I CCANNNNNTGG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 1366
VspI ATTAAT 1 cut(s) 990
XapI RAATTY 4 cut(s) 386, 1442, 1663, 1674
XhoI CTCGAG 1 cut(s) 1361
XspI CTAG 5 cut(s) 450, 492, 590, 609, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.