Rh5BG550900

NO-associated protein 1, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
87550326 .. 87554705
4380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG550900.1

Sequence Viewer

Length: 1398 bp
ATGATGATAGCTCGAACTCACTCCCTCACAAAACTAAAGCCCCTCATCTCCATCTCCCTCATTTCCCAATCCCTCACACCCAAACCCCCATCTTCACATCCCACTCCAATCCCTAAACCCCAATTCCAAAACCCCTCAACAAAGTCTCAACCTTTCGTCTTCTCCAACCCCTTCTCGTCTTCCCAGCATCTCCCTCTCAGCCGCGAAGGAAATTACGATGAAGCCACCGCCCCAAACCTCATCGTCTGCCCCGGTTGTGGGGTCCACATGCAGGACTCCGACCCCAAAAACCCCGGCTTCTTCCTCAAACCCTCGAAAAAGGACCCCAGGACTTACAAATTGGGTCCCCATCTCGAGCCGGTTGCTCTGGAATGTGAATTCAACGGAGCCCTGAAGAGGGGTTTCGTGATCGAGCCCGAAAACTTGGATGATTCAGGTCCCAATTTGGGTGAATTGGGACCAGAATCGAAGCCCGAAAAGCCGGTGGTGTGTGCCAGGTGCCATTCTTTGAGGCATTATGGGAGAGTGAAGGATACAGCTGTGGAGAATCTGCTGCCGGATTTCGATTTCTATCACACGGTTGGGAGGAAGCTGGCATTGGCCTCTGGGACTAGATCAGTGGTGCTGATGGTGGTGGACGCGGCGGATTTCGATGGCTCGTTTCCGAAAAAGGTGGCTAAGTTGGTGTCAGACACCATTGATGAGCATTCCACTGCTTGGAAACAGGGGAGGTCGGGAAATGTGCCAAGAGTGGTGCTTGTTGTGACCAAGATTGATCTTCTGCCGAGCTCGTTGGGGCCGACTAGGTTGGAGCATTGGGTTAGGAGTAGGGCCCGGGAGGGCGGGGCGGATAAGATTACGAGTGTGCATTTGGTGAGTGCAGTGAGGGATTGGGGGTTGAAGAATCTGGTGGATGATGTGTCTAGCTTGGCAGGGCCGAGAGGGAATGTGTGGGCAATAGGGGCACAGAATGCAGGGAAGAGTACTTTGATCAACGCGATAGGGAAGCATAGTGGAGGGAAGATTACTCAGTTGACAGAAGCGCCAGTTCCGGGAACTACATTGGGAATTGTGAGAGTGGAAGGTGTGCTTCCTGGTAAGACCAAGCTGTTTGATACGCCGGGGCTTTTGCATCCTCATCAGATTACAACTAGGTTGACTAGAGAGGAGCAAAGTCTTGTAAACATTAGCAAGGAGTTGAAACCAAGGACCTACAGGATCAAGGATGGTTATTCAGTTCATATTGCTGGGCTTATGAGGCTGGATATAGAAGAATCATCGGTAGATTCTGTTTATGTTACAGCATGGGCGTCTCCTTATCTTCCATTACACATGGGGAAAACGGAAAACGCATCCGAAATGGTAGAGAAACACTTTGGTCGTCAGTTACAGGTATGA

Protein Analysis

465

Amino Acids

50.79

Weight (kDa)

9.16

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 317 - 391 3.9e-09 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 498
AccB7I CCANNNNNTGG 1 cut(s) 717
AccII CGCG 3 cut(s) 204, 641, 998
AciI CCGC 6 cut(s) 202, 228, 641, 644, 843, 848
AclWI GGATC 1 cut(s) 1226
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 1310
AfaI GTAC 1 cut(s) 985
AfiI CCNNNNNNNGG 8 cut(s) 257, 258, 271, 396, 397, 446, 717, 1052
AgsI TTSAA 3 cut(s) 382, 901, 1201
AjnI CCWGG 3 cut(s) 326, 494, 1093
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 6 cut(s) 11, 539, 592, 789, 927, 1108
AluI AGCT 6 cut(s) 11, 539, 592, 789, 927, 1108
Alw21I GWGCWC 1 cut(s) 791
Alw26I GTCTC 2 cut(s) 150, 1317
AlwI GGATC 1 cut(s) 1226
Ama87I CYCGRG 2 cut(s) 353, 834
AoxI GGCC 4 cut(s) 600, 797, 831, 935
ApaI GGGCCC 1 cut(s) 835
ApeKI GCWGC 1 cut(s) 553
ApoI RAATTY 1 cut(s) 377
AspLEI GCGC 1 cut(s) 1045
AsuC2I CCSGG 6 cut(s) 252, 294, 835, 836, 1053, 1122
AsuHPI GGTGA 2 cut(s) 461, 886
AvaI CYCGRG 2 cut(s) 353, 834
AvaII GGWCC 6 cut(s) 262, 322, 344, 437, 458, 1209
BaeGI GKGCMC 2 cut(s) 835, 967
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BanI GGYRCC 1 cut(s) 498
BanII GRGCYC 4 cut(s) 391, 417, 791, 835
BbsI GAAGAC 2 cut(s) 151, 171
Bbv12I GWGCWC 1 cut(s) 791
BbvI GCAGC 1 cut(s) 540
BccI CCATC 6 cut(s) 59, 97, 357, 622, 647, 1220
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 3 cut(s) 328, 496, 1095
BciVI GTATCC 1 cut(s) 526
BclI TGATCA 1 cut(s) 990
BcnI CCSGG 6 cut(s) 252, 294, 835, 836, 1053, 1122
BcoDI GTCTC 2 cut(s) 150, 1317
BfaI CTAG 5 cut(s) 612, 804, 924, 1152, 1161
BfmI CTRYAG 1 cut(s) 1213
BfoI RGCGCY 1 cut(s) 1046
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 3 cut(s) 202, 554, 642
BlsI GCNGC 3 cut(s) 203, 555, 643
BmcAI AGTACT 1 cut(s) 985
Bme1390I CCNGG 9 cut(s) 252, 294, 328, 496, 835, 836, 1053, 1095, 1122
Bme18I GGWCC 6 cut(s) 262, 322, 344, 437, 458, 1209
BmeT110I CYCGRG 2 cut(s) 353, 834
BmrFI CCNGG 9 cut(s) 252, 294, 328, 496, 835, 836, 1053, 1095, 1122
BmsI GCATC 3 cut(s) 196, 1141, 1361
BpiI GAAGAC 2 cut(s) 151, 171
BpuMI CCSGG 6 cut(s) 252, 294, 835, 836, 1053, 1122
BsaBI GATNNNNATC 1 cut(s) 570
BsaHI GRCGYC 1 cut(s) 1310
BsaJI CCNNGG 6 cut(s) 250, 292, 326, 834, 1121, 1205
Bsc4I CCNNNNNNNGG 8 cut(s) 257, 258, 271, 396, 397, 446, 717, 1052
Bse118I RCCGGY 2 cut(s) 358, 481
Bse1I ACTGG 1 cut(s) 1046
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 3 cut(s) 328, 496, 1095
BseDI CCNNGG 6 cut(s) 250, 292, 326, 834, 1121, 1205
BseGI GGATG 6 cut(s) 97, 433, 919, 1132, 1231, 1352
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 8 cut(s) 257, 258, 271, 396, 397, 446, 717, 1052
BseMII CTCAG 2 cut(s) 211, 1043
BseNI ACTGG 1 cut(s) 1046
BseRI GAGGAG 1 cut(s) 1181
BseSI GKGCMC 2 cut(s) 835, 967
BseXI GCAGC 1 cut(s) 540
BseYI CCCAGC 2 cut(s) 183, 1247
BsgI GTGCAG 1 cut(s) 900
Bsh1236I CGCG 3 cut(s) 204, 641, 998
BshFI GGCC 4 cut(s) 602, 799, 833, 937
BshNI GGYRCC 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 791
BsiHKCI CYCGRG 2 cut(s) 353, 834
BsiSI CCGG 8 cut(s) 252, 294, 359, 482, 557, 835, 1052, 1121
BslFI GGGAC 4 cut(s) 330, 423, 471, 622
BslI CCNNNNNNNGG 8 cut(s) 257, 258, 271, 396, 397, 446, 717, 1052
BsmAI GTCTC 2 cut(s) 150, 1317
BsmBI CGTCTC 1 cut(s) 1317
BsmFI GGGAC 4 cut(s) 330, 423, 471, 622
BsmI GAATGC 2 cut(s) 706, 976
BsnI GGCC 4 cut(s) 602, 799, 833, 937
BsoBI CYCGRG 2 cut(s) 353, 834
Bsp120I GGGCCC 1 cut(s) 831
Bsp1286I GDGCHC 5 cut(s) 391, 417, 791, 835, 967
Bsp143I GATC 5 cut(s) 408, 614, 775, 990, 1218
BspACI CCGC 6 cut(s) 202, 228, 641, 644, 843, 848
BspANI GGCC 4 cut(s) 602, 799, 833, 937
BspCNI CTCAG 2 cut(s) 210, 1042
BspFNI CGCG 3 cut(s) 204, 641, 998
BspPI GGATC 1 cut(s) 1226
BspT107I GGYRCC 1 cut(s) 498
BsrFI RCCGGY 2 cut(s) 358, 481
BsrI ACTGG 1 cut(s) 1046
BssAI RCCGGY 2 cut(s) 358, 481
BssECI CCNNGG 6 cut(s) 250, 292, 326, 834, 1121, 1205
BssMI GATC 5 cut(s) 408, 614, 775, 990, 1218
BssNI GRCGYC 1 cut(s) 1310
BssT1I CCWWGG 1 cut(s) 1205
Bst2UI CCWGG 3 cut(s) 328, 496, 1095
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 2 cut(s) 389, 974
BstACI GRCGYC 1 cut(s) 1310
BstAPI GCANNNNNTGC 1 cut(s) 971
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 3 cut(s) 197, 678, 1029
BstF5I GGATG 6 cut(s) 97, 433, 919, 1132, 1231, 1352
BstFNI CGCG 3 cut(s) 204, 641, 998
BstH2I RGCGCY 1 cut(s) 1046
BstHHI GCGC 1 cut(s) 1045
BstKTI GATC 5 cut(s) 411, 617, 778, 993, 1221
BstMAI GTCTC 2 cut(s) 150, 1317
BstMBI GATC 5 cut(s) 408, 614, 775, 990, 1218
BstMWI GCNNNNNNNGC 4 cut(s) 478, 962, 971, 1258
BstNI CCWGG 3 cut(s) 328, 496, 1095
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 9 cut(s) 250, 292, 326, 494, 833, 834, 1051, 1093, 1120
BstSFI CTRYAG 1 cut(s) 1213
BstSLI GKGCMC 2 cut(s) 835, 967
BstUI CGCG 3 cut(s) 204, 641, 998
BstV1I GCAGC 1 cut(s) 540
BstV2I GAAGAC 2 cut(s) 151, 171
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 4 cut(s) 602, 799, 833, 937
BtsCI GGATG 6 cut(s) 97, 433, 919, 1132, 1231, 1352
BtsI GCAGTG 2 cut(s) 711, 888
BtsIMutI CAGTG 3 cut(s) 624, 711, 888
Cac8I GCNNGC 1 cut(s) 594
CfoI GCGC 1 cut(s) 1045
Cfr10I RCCGGY 2 cut(s) 358, 481
Cfr9I CCCGGG 1 cut(s) 834
CseI GACGC 2 cut(s) 647, 1299
Csp6I GTAC 1 cut(s) 984
CviAII CATG 3 cut(s) 268, 1305, 1333
CviQI GTAC 1 cut(s) 984
DdeI CTNAG 3 cut(s) 197, 678, 1029
DpnI GATC 5 cut(s) 410, 616, 777, 992, 1220
DpnII GATC 5 cut(s) 408, 614, 775, 990, 1218
Eam1104I CTCTTC 2 cut(s) 389, 974
EarI CTCTTC 2 cut(s) 389, 974
EciI GGCGGA 2 cut(s) 659, 863
Ecl136II GAGCTC 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 1205
Eco24I GRGCYC 4 cut(s) 391, 417, 791, 835
Eco47I GGWCC 6 cut(s) 262, 322, 344, 437, 458, 1209
Eco53kI GAGCTC 1 cut(s) 789
Eco57I CTGAAG 1 cut(s) 413
Eco88I CYCGRG 2 cut(s) 353, 834
EcoICRI GAGCTC 1 cut(s) 789
EcoO109I RGGNCCY 5 cut(s) 322, 344, 437, 831, 1209
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 3 cut(s) 326, 494, 1093
EcoT14I CCWWGG 1 cut(s) 1205
EcoT38I GRGCYC 4 cut(s) 391, 417, 791, 835
ErhI CCWWGG 1 cut(s) 1205
Esp3I CGTCTC 1 cut(s) 1317
FaeI CATG 3 cut(s) 271, 1308, 1336
FalI AAGNNNNNCTT 2 cut(s) 1074, 1106
FaqI GGGAC 4 cut(s) 330, 423, 471, 622
FatI CATG 3 cut(s) 267, 1304, 1332
FauI CCCGC 1 cut(s) 836
FbaI TGATCA 1 cut(s) 990
Fnu4HI GCNGC 3 cut(s) 202, 554, 642
FokI GGATG 6 cut(s) 84, 440, 926, 1119, 1238, 1339
FriOI GRGCYC 4 cut(s) 391, 417, 791, 835
Fsp4HI GCNGC 3 cut(s) 202, 554, 642
FspBI CTAG 5 cut(s) 612, 804, 924, 1152, 1161
GlaI GCGC 1 cut(s) 1044
GluI GCNGC 3 cut(s) 202, 554, 642
GsaI CCCAGC 2 cut(s) 187, 1251
HaeII RGCGCY 1 cut(s) 1046
HaeIII GGCC 4 cut(s) 602, 799, 833, 937
HapII CCGG 8 cut(s) 252, 294, 359, 482, 557, 835, 1052, 1121
HgaI GACGC 2 cut(s) 647, 1299
HhaI GCGC 1 cut(s) 1045
Hin1I GRCGYC 1 cut(s) 1310
Hin1II CATG 3 cut(s) 271, 1308, 1336
Hin6I GCGC 1 cut(s) 1043
HinP1I GCGC 1 cut(s) 1043
HincII GTYRAC 2 cut(s) 1035, 1158
HindII GTYRAC 2 cut(s) 1035, 1158
HinfI GANTC 7 cut(s) 275, 431, 464, 547, 904, 1274, 1286
HpaII CCGG 8 cut(s) 252, 294, 359, 482, 557, 835, 1052, 1121
HphI GGTGA 2 cut(s) 461, 886
Hpy166II GTNNAC 5 cut(s) 265, 637, 1035, 1158, 1183
Hpy188I TCNGA 5 cut(s) 280, 666, 691, 1143, 1357
Hpy188III TCNNGA 4 cut(s) 353, 368, 406, 735
Hpy8I GTNNAC 5 cut(s) 265, 637, 1035, 1158, 1183
HpyAV CCTTC 4 cut(s) 181, 200, 523, 1076
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4V TGCA 5 cut(s) 271, 868, 881, 974, 1132
HpyF10VI GCNNNNNNNGC 4 cut(s) 478, 962, 971, 1258
HpyF3I CTNAG 3 cut(s) 197, 678, 1029
Hsp92I GRCGYC 1 cut(s) 1310
Hsp92II CATG 3 cut(s) 271, 1308, 1336
HspAI GCGC 1 cut(s) 1043
KflI GGGWCCC 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 990
Kzo9I GATC 5 cut(s) 408, 614, 775, 990, 1218
LmnI GCTCC 3 cut(s) 386, 811, 1168
Lsp1109I GCAGC 1 cut(s) 540
LweI GCATC 3 cut(s) 196, 1141, 1361
MaeI CTAG 5 cut(s) 612, 804, 924, 1152, 1161
MaeIII GTNAC 3 cut(s) 763, 1297, 1386
MalI GATC 5 cut(s) 410, 616, 777, 992, 1220
MboI GATC 5 cut(s) 408, 614, 775, 990, 1218
MhlI GDGCHC 5 cut(s) 391, 417, 791, 835, 967
MluCI AATT 7 cut(s) 122, 211, 338, 377, 442, 452, 1068
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 3 cut(s) 189, 303, 789
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 8 cut(s) 252, 294, 359, 482, 557, 835, 1052, 1121
MspR9I CCNGG 9 cut(s) 252, 294, 328, 496, 835, 836, 1053, 1095, 1122
Mva1269I GAATGC 2 cut(s) 706, 976
MvaI CCWGG 3 cut(s) 328, 496, 1095
MvnI CGCG 3 cut(s) 204, 641, 998
MwoI GCNNNNNNNGC 4 cut(s) 478, 962, 971, 1258
NciI CCSGG 6 cut(s) 252, 294, 835, 836, 1053, 1122
NdeII GATC 5 cut(s) 408, 614, 775, 990, 1218
NlaIII CATG 3 cut(s) 271, 1308, 1336
NmeAIII GCCGAG 2 cut(s) 810, 963
NmuCI GTSAC 1 cut(s) 763
NspI RCATGY 1 cut(s) 271
PaeR7I CTCGAG 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 797
PctI GAATGC 2 cut(s) 706, 976
PfeI GAWTC 6 cut(s) 431, 464, 547, 904, 1274, 1286
PflMI CCANNNNNTGG 1 cut(s) 717
PfoI TCCNGGA 1 cut(s) 1051
PkrI GCNGC 3 cut(s) 203, 555, 643
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PpuMI RGGWCCY 4 cut(s) 322, 344, 437, 1209
Psp124BI GAGCTC 1 cut(s) 791
Psp5II RGGWCCY 4 cut(s) 322, 344, 437, 1209
Psp6I CCWGG 3 cut(s) 326, 494, 1093
PspFI CCCAGC 2 cut(s) 183, 1247
PspGI CCWGG 3 cut(s) 326, 494, 1093
PspOMI GGGCCC 1 cut(s) 831
PspPPI RGGWCCY 4 cut(s) 322, 344, 437, 1209
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 1 cut(s) 985
RsaNI GTAC 1 cut(s) 984
SacI GAGCTC 1 cut(s) 791
SatI GCNGC 3 cut(s) 202, 554, 642
Sau3AI GATC 5 cut(s) 408, 614, 775, 990, 1218
ScaI AGTACT 1 cut(s) 985
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 9 cut(s) 252, 294, 328, 496, 835, 836, 1053, 1095, 1122
SduI GDGCHC 5 cut(s) 391, 417, 791, 835, 967
SfaNI GCATC 3 cut(s) 196, 1141, 1361
SfcI CTRYAG 1 cut(s) 1213
Sfr274I CTCGAG 1 cut(s) 353
SinI GGWCC 6 cut(s) 262, 322, 344, 437, 458, 1209
SlaI CTCGAG 1 cut(s) 353
SmaI CCCGGG 1 cut(s) 836
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 7 cut(s) 122, 211, 338, 377, 442, 452, 1068
SsiI CCGC 6 cut(s) 202, 228, 641, 644, 843, 848
SspMI CTAG 5 cut(s) 612, 804, 924, 1152, 1161
SstI GAGCTC 1 cut(s) 791
StyD4I CCNGG 9 cut(s) 250, 292, 326, 494, 833, 834, 1051, 1093, 1120
StyI CCWWGG 1 cut(s) 1205
TaaI ACNGT 1 cut(s) 580
TaqI TCGA 7 cut(s) 13, 314, 354, 411, 467, 564, 651
TasI AATT 7 cut(s) 122, 211, 338, 377, 442, 452, 1068
TatI WGTACW 1 cut(s) 983
TauI GCSGC 2 cut(s) 204, 644
TfiI GAWTC 6 cut(s) 431, 464, 547, 904, 1274, 1286
TscAI CASTG 3 cut(s) 624, 718, 888
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 1 cut(s) 553
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 2 cut(s) 234, 1229
TspGWI ACGGA 2 cut(s) 399, 1358
TspMI CCCGGG 1 cut(s) 834
TspRI CASTG 3 cut(s) 624, 718, 888
Van91I CCANNNNNTGG 1 cut(s) 717
VpaK11BI GGWCC 6 cut(s) 262, 322, 344, 437, 458, 1209
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 353
XmaI CCCGGG 1 cut(s) 834
XspI CTAG 5 cut(s) 612, 804, 924, 1152, 1161
ZrmI AGTACT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.