Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010230

Physical Location & Seq

Genomic Coordinates Forward (+)

65249059 .. 65250615

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0475100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCGCCGTTCTAATGTGTCTAACATCCAAAAGCCTACTACTGGTAATGCACCGAGTAAACTCTCTCGTGTGCAAACTACTGATCAGCCATGCCCAAATGGATCCCGTTCTACTTCAGGTAGTGCAATGAGTAAACGCTCTCGTGTGCAAACTACTAATCAATCATGCGAAAATTATGTAGAAGATGGACTCAATTCTGCTATTGGTACCACTACAGAACGAACTACTACTGGGGTCAGAATTAGTTCACGTCTTCAGCATCAAACTGCTAATGATCAGCTATTGATAAATGTTACAACTGAAGAGCAAAATGATAATGTGATGTCAGCCAGTAATCAAGACCCTCCTACAGGTCCAACAAAAAAGGTGAGGGGAAAGACAAGAGGAGTGAATGCAGATAAAGTGCTTTCTCAATTGAATGCTAAAATACCTGTCACTCTGACCGAACAAAATGGTAGGCCTACAGGCCCATATTCTGAAATGTTGGCCAATGAAATTGGTTTCACAGTTCGAAACCATGCCCCACTAAATGTGGAAAAATGGAAGAAGATTCCAAAAATTGAAGTGGATAAGTTGGTTAAAAGAATAACGAACAAGTTTGACATTGACATGTCTCTCCTTGGGTCGAGAGATATAAAAGGCTTCACACGACGGTTTAAAACTGTCGTCTCACGTTATACATTTCCGTGGTCTATCGAGGCGTCGTCTGATGAAACGTTGTCAGACGACGGTTTTCAACCGTCGTATACCGATCATTGGGTCGACGGTGTGCAACTAACTCCGTCGTCTGATGGGATCGACAGATCTGTCGACAAGCTGTCGACAGCAATTTGCCGTGGTGTGACATTTATTCATACCACGGTTTTTATGAACATTCGTTGTCTGTTTGAGATTCATAAGTCAGTTTTTATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0006275 GO:0008150 GO:0008156 GO:0009889 GO:0009890 GO:0009892 GO:0010556 GO:0010558 GO:0010605 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0022613 GO:0030174 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032297 GO:0042254 GO:0044085 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

305

Amino Acids

33.88

Weight (kDa)

9.44

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10620
fragaria_vesca	FvH4_3g44540 FvH4_3g44540
malus_domestica	MD03G1012100.v1.1 MD11G1014800.v1.1
prunus_persica	Prupe.6G012300_v2.0.a1 Prupe.6G012300_v2.0.a1
pyrus_communis	pycom03g01080 pycom11g01010
rosa_chinensis	RchiOBHm_Chr5g0081231 RchiOBHm_Chr5g0081271
rosa_laevigata	RLG00000036921
rosa_multiflora	Rmu_sc0007768.1_g000003 Rmu_ssc0000432.1_g000069
rosa_roxburghii	Rroxscaffold_1G00002240
rosa_rugosa	Rorug05G0475100
rosa_samantha	Rh5AG526700 Rh5BG550900 Rh5CG573800 Rh5DG561000
rosa_wichuraiana	Rw5G048960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	806
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	206
AccI	GTMKAC	4 cut(s)	746, 762, 810, 821
AclI	AACGTT	1 cut(s)	716
AclWI	GGATC	3 cut(s)	96, 109, 803
AcoI	YGGCCR	1 cut(s)	486
AcuI	CTGAAG	3 cut(s)	99, 239, 321
AcyI	GRCGYC	1 cut(s)	701
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	3 cut(s)	41, 350, 756
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	3 cut(s)	418, 563, 737
AhdI	GACNNNNNGTC	1 cut(s)	817
AjiI	CACGTC	1 cut(s)	251
AluBI	AGCT	2 cut(s)	280, 817
AluI	AGCT	2 cut(s)	280, 817
Alw26I	GTCTC	2 cut(s)	618, 673
AlwI	GGATC	3 cut(s)	96, 109, 803
AoxI	GGCC	3 cut(s)	458, 466, 486
Asp700I	GAANNNNTTC	1 cut(s)	244
Asp718I	GGTACC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	353, 467
AsuHPI	GGTGA	1 cut(s)	379
AsuII	TTCGAA	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	206
BauI	CACGAG	2 cut(s)	66, 141
BbsI	GAAGAC	1 cut(s)	245
BccI	CCATC	2 cut(s)	179, 785
BceAI	ACGGC	1 cut(s)	819
BclI	TGATCA	2 cut(s)	82, 274
BcoDI	GTCTC	2 cut(s)	618, 673
BfmI	CTRYAG	3 cut(s)	213, 348, 462
BglII	AGATCT	1 cut(s)	803
Bme18I	GGWCC	1 cut(s)	353
BmeRI	GACNNNNNGTC	1 cut(s)	817
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	353, 467
BmiI	GGNNCC	2 cut(s)	103, 208
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	511
BsaHI	GRCGYC	1 cut(s)	701
BsaJI	CCNNGG	4 cut(s)	619, 686, 835, 858
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 350, 756
Bse1I	ACTGG	3 cut(s)	46, 235, 330
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	4 cut(s)	619, 686, 835, 858
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	3 cut(s)	41, 350, 756
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	3 cut(s)	46, 235, 330
BseRI	GAGGAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	460, 468, 488
BshNI	GGYRCC	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	41, 350, 756
BsmAI	GTCTC	2 cut(s)	618, 673
BsmBI	CGTCTC	1 cut(s)	673
BsmI	GAATGC	2 cut(s)	397, 424
BsnI	GGCC	3 cut(s)	460, 468, 488
Bsp119I	TTCGAA	1 cut(s)	511
Bsp143I	GATC	6 cut(s)	82, 101, 274, 751, 795, 803
BspANI	GGCC	3 cut(s)	460, 468, 488
BspLI	GGNNCC	2 cut(s)	103, 208
BspPI	GGATC	3 cut(s)	96, 109, 803
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	3 cut(s)	46, 235, 330
BssECI	CCNNGG	4 cut(s)	619, 686, 835, 858
BssMI	GATC	6 cut(s)	82, 101, 274, 751, 795, 803
BssNAI	GTATAC	1 cut(s)	747
BssNI	GRCGYC	1 cut(s)	701
BssSI	CACGAG	2 cut(s)	66, 141
BssT1I	CCWWGG	1 cut(s)	619
Bst1107I	GTATAC	1 cut(s)	747
Bst2BI	CACGAG	2 cut(s)	66, 141
Bst4CI	ACNGT	7 cut(s)	508, 654, 664, 731, 741, 767, 862
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	701
BstBI	TTCGAA	1 cut(s)	511
BstDSI	CCRYGG	3 cut(s)	686, 835, 858
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	6 cut(s)	85, 104, 277, 754, 798, 806
BstMAI	GTCTC	2 cut(s)	618, 673
BstMBI	GATC	6 cut(s)	82, 101, 274, 751, 795, 803
BstNSI	RCATGY	1 cut(s)	613
BstSFI	CTRYAG	3 cut(s)	213, 348, 462
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	101, 803
BstYI	RGATCY	2 cut(s)	101, 803
BstZ17I	GTATAC	1 cut(s)	747
BsuRI	GGCC	3 cut(s)	460, 468, 488
BtgI	CCRYGG	3 cut(s)	686, 835, 858
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	24
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	353, 467
CseI	GACGC	1 cut(s)	690
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	4 cut(s)	90, 165, 518, 610
CviJI	RGCY	9 cut(s)	34, 88, 280, 329, 460, 468, 488, 642, 817
CviKI_1	RGCY	9 cut(s)	34, 88, 280, 329, 460, 468, 488, 642, 817
CviQI	GTAC	1 cut(s)	207
DpnI	GATC	6 cut(s)	84, 103, 276, 753, 797, 805
DpnII	GATC	6 cut(s)	82, 101, 274, 751, 795, 803
DraI	TTTAAA	1 cut(s)	658
DrdI	GACNNNNNNGTC	1 cut(s)	806
DriI	GACNNNNNGTC	1 cut(s)	817
DseDI	GACNNNNNNGTC	1 cut(s)	806
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	297
Eam1105I	GACNNNNNGTC	1 cut(s)	817
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	619
Eco147I	AGGCCT	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	3 cut(s)	99, 239, 321
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	673
FaeI	CATG	4 cut(s)	93, 168, 521, 613
FatI	CATG	4 cut(s)	89, 164, 517, 609
FbaI	TGATCA	2 cut(s)	82, 274
FblI	GTMKAC	4 cut(s)	746, 762, 810, 821
FokI	GGATG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	5
HaeIII	GGCC	3 cut(s)	460, 468, 488
HgaI	GACGC	1 cut(s)	690
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	701
Hin1II	CATG	4 cut(s)	93, 168, 521, 613
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	3 cut(s)	763, 811, 822
HindII	GTYRAC	3 cut(s)	763, 811, 822
HinfI	GANTC	3 cut(s)	189, 550, 892
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	7 cut(s)	59, 134, 248, 747, 763, 811, 822
Hpy188I	TCNGA	6 cut(s)	239, 441, 478, 709, 724, 790
Hpy188III	TCNNGA	2 cut(s)	338, 627
Hpy8I	GTNNAC	7 cut(s)	59, 134, 248, 747, 763, 811, 822
Hpy99I	CGWCG	6 cut(s)	654, 706, 731, 745, 767, 787
HpyCH4III	ACNGT	7 cut(s)	508, 654, 664, 731, 741, 767, 862
HpyCH4IV	ACGT	3 cut(s)	250, 673, 716
HpyCH4V	TGCA	6 cut(s)	50, 73, 125, 148, 395, 772
HpySE526I	ACGT	3 cut(s)	250, 673, 716
Hsp92I	GRCGYC	1 cut(s)	701
Hsp92II	CATG	4 cut(s)	93, 168, 521, 613
HspAI	GCGC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	210
Ksp22I	TGATCA	2 cut(s)	82, 274
Kzo9I	GATC	6 cut(s)	82, 101, 274, 751, 795, 803
LguI	GCTCTTC	1 cut(s)	297
LpnPI	CCDG	7 cut(s)	27, 102, 216, 336, 343, 444, 450
LweI	GCATC	1 cut(s)	268
MaeII	ACGT	3 cut(s)	250, 673, 716
MaeIII	GTNAC	3 cut(s)	292, 433, 841
MalI	GATC	6 cut(s)	84, 103, 276, 753, 797, 805
MboI	GATC	6 cut(s)	82, 101, 274, 751, 795, 803
MboII	GAAGA	5 cut(s)	194, 245, 314, 556, 559
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	2 cut(s)	101, 803
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	7 cut(s)	172, 193, 240, 413, 495, 558, 828
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	4 cut(s)	354, 363, 377, 691
Mox20I	TGGCCA	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	2 cut(s)	579, 657
MslI	CAYNNNNRTG	2 cut(s)	608, 685
Msp20I	TGGCCA	1 cut(s)	488
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	2 cut(s)	397, 424
NdeII	GATC	6 cut(s)	82, 101, 274, 751, 795, 803
NlaIII	CATG	4 cut(s)	93, 168, 521, 613
NlaIV	GGNNCC	2 cut(s)	103, 208
NmuCI	GTSAC	2 cut(s)	433, 841
NspI	RCATGY	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	460
PciI	ACATGT	1 cut(s)	609
PciSI	GCTCTTC	1 cut(s)	297
PctI	GAATGC	2 cut(s)	397, 424
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	550, 892
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PscI	ACATGT	1 cut(s)	609
Psp1406I	AACGTT	1 cut(s)	716
PspN4I	GGNNCC	2 cut(s)	103, 208
PspPI	GGNCC	2 cut(s)	353, 467
PsuI	RGATCY	2 cut(s)	101, 803
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	2 cut(s)	608, 685
SalI	GTCGAC	3 cut(s)	761, 809, 820
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	579, 657
Sau3AI	GATC	6 cut(s)	82, 101, 274, 751, 795, 803
Sau96I	GGNCC	2 cut(s)	353, 467
SchI	GAGTC	1 cut(s)	183
SetI	ASST	9 cut(s)	121, 253, 282, 355, 369, 433, 676, 719, 819
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	3 cut(s)	213, 348, 462
SfuI	TTCGAA	1 cut(s)	511
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	2 cut(s)	608, 685
Sse9I	AATT	7 cut(s)	172, 193, 240, 413, 495, 558, 828
SseBI	AGGCCT	1 cut(s)	460
StuI	AGGCCT	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	7 cut(s)	508, 654, 664, 731, 741, 767, 862
TaiI	ACGT	3 cut(s)	253, 676, 719
TaqI	TCGA	7 cut(s)	511, 626, 696, 762, 798, 810, 821
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	7 cut(s)	172, 193, 240, 413, 495, 558, 828
TfiI	GAWTC	2 cut(s)	550, 892
Tru1I	TTAA	2 cut(s)	579, 657
Tru9I	TTAA	2 cut(s)	579, 657
TseFI	GTSAC	2 cut(s)	433, 841
Tsp45I	GTSAC	2 cut(s)	433, 841
TspDTI	ATGAA	5 cut(s)	507, 726, 842, 884, 884
TspGWI	ACGGA	2 cut(s)	675, 771
VpaK11BI	GGWCC	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	348
XceI	RCATGY	1 cut(s)	613
XmiI	GTMKAC	4 cut(s)	746, 762, 810, 821
XmnI	GAANNNNTTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.