Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012784

Physical Location & Seq

Genomic Coordinates Reverse (-)

7365257 .. 7368730

Gene Structure 3474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATTTAAACTCAAACCACAAATCCTCTGTTCTTAAAGATCCTTCACCATCAGTTAACCAATCAAGACTCGGCGTGTCTAGTAGATTTATGATGAGTCAATGGAAGAAACCTGCGAAACTCGATGATGTTAGATCCAATGGTTGGTTAGATGCAATGATTTCATCTTCTCCACCGCGTAAGAAGCTTGTCAAAGATTTTAATGTTGAAGTTGCTCCTGAAGATGATTTTGCTCAACGTGCTTGGATGGTGAAATATCCTTCGGCGATTAGCTCGTTTGCGCATATTGCAGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAATGCGTTCTGCGGTTAAAGATGTCGCGAGTTACTTCCCAACCGCAATAATTAGCGGTAGAAGCCGTGACAAGGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGGAATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTGACCAACAGGGTAAGGAAGTGAATCTGTTTCAGCCCGCGAGAGAATTCATACCGGTTATCGACGAGGTTTTTAGAACCCTTGTTGAGAAAATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTTCTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGGATTGGCCTATTATTGCTCAGCGTGTTCATGACCACTTGAAACAATACCCTCGTTTGCGTCTAACTCATGGGAGGAAGGTTTTAGAGGTTCGTCCTGTGATAGACTGGAACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATCTCTCGGATTAAGCAATAAAGACGATTTGCTTCCTATCTACATTGGTGATGACACAACCGATGAAGATGCGTTCAAGGTACTGAGAGATGGGAACCGAGGTTTCGGCATCCTAGTATCGTCTATACCGAAAGAAAGCAATGCGTTTTACTCCCTTAGAGATCCATCCGAGGTGAAGAAGTTTCTAAAGACTTTGGTGAAATGGGCAAAGTTGGAGAAGAATTCTACTGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004805 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046872 GO:0071704 GO:0071944 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

368

Amino Acids

41.61

Weight (kDa)

9.09

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	108 - 346	1.3e-67	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12430 AT4G22590
fragaria_vesca	FvH4_5g00270 FvH4_5g00270
prunus_persica	Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202351
rosa_laevigata	RLG00000003607
rosa_multiflora	Rmu_sc0000266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254650
rosa_rugosa	Rorug07G0070000
rosa_samantha	Rh7AG197400 Rh7BG198500 Rh7CG208500 Rh7DG204200
rosa_wichuraiana	Rw7G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	121
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	851
AccII	CGCG	4 cut(s)	178, 416, 500, 599
AciI	CCGC	7 cut(s)	176, 401, 432, 444, 500, 597, 851
AclI	AACGTT	1 cut(s)	717
AclWI	GGATC	4 cut(s)	35, 129, 356, 1025
AcsI	RAATTY	2 cut(s)	605, 1090
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	340, 705, 951
AfiI	CCNNNNNNNGG	2 cut(s)	144, 460
AgeI	ACCGGT	1 cut(s)	613
AgsI	TTSAA	4 cut(s)	209, 553, 769, 946
AluBI	AGCT	3 cut(s)	187, 273, 293
AluI	AGCT	3 cut(s)	187, 273, 293
AlwI	GGATC	4 cut(s)	35, 129, 356, 1025
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	605, 1090
AsiGI	ACCGGT	1 cut(s)	613
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	5 cut(s)	39, 262, 929, 1054, 1078
AvaII	GGWCC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	7 cut(s)	58, 241, 329, 383, 530, 953, 1042
BceAI	ACGGC	1 cut(s)	438
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BfaI	CTAG	3 cut(s)	81, 326, 983
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	291
BlpI	GCTNAGC	1 cut(s)	747
BlsI	GCNGC	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	965
BmsI	GCATC	5 cut(s)	142, 376, 707, 928, 987
Bpu1102I	GCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	967, 1038
BsaWI	WCCGGW	1 cut(s)	613
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 460
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	2 cut(s)	839, 1102
Bse3DI	GCAATG	3 cut(s)	162, 396, 1015
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	967, 1038
BseGI	GGATG	3 cut(s)	252, 978, 1034
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	144, 460
BseMI	GCAATG	3 cut(s)	162, 396, 1015
BseMII	CTCAG	2 cut(s)	761, 944
BseNI	ACTGG	2 cut(s)	839, 1102
BseXI	GCAGC	1 cut(s)	302
Bsh1236I	CGCG	4 cut(s)	178, 416, 500, 599
Bsh1285I	CGRYCG	1 cut(s)	855
BshFI	GGCC	1 cut(s)	736
BshTI	ACCGGT	1 cut(s)	613
BsiEI	CGRYCG	1 cut(s)	855
BsiSI	CCGG	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	144, 460
BsnI	GGCC	1 cut(s)	736
Bsp1407I	TGTACA	1 cut(s)	703
Bsp143I	GATC	5 cut(s)	40, 134, 361, 367, 1030
Bsp1720I	GCTNAGC	1 cut(s)	747
Bsp68I	TCGCGA	1 cut(s)	416
BspACI	CCGC	7 cut(s)	176, 401, 432, 444, 500, 597, 851
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	2 cut(s)	760, 945
BspFNI	CGCG	4 cut(s)	178, 416, 500, 599
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	1 cut(s)	965
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	4 cut(s)	35, 129, 356, 1025
BspQI	GCTCTTC	1 cut(s)	841
BsrBI	CCGCTC	1 cut(s)	851
BsrDI	GCAATG	3 cut(s)	162, 396, 1015
BsrFI	RCCGGY	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	703
BsrI	ACTGG	2 cut(s)	839, 1102
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	2 cut(s)	967, 1038
BssMI	GATC	5 cut(s)	40, 134, 361, 367, 1030
Bst4CI	ACNGT	1 cut(s)	713
Bst6I	CTCTTC	1 cut(s)	841
BstAUI	TGTACA	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	3 cut(s)	747, 953, 1025
BstF5I	GGATG	3 cut(s)	252, 978, 1034
BstFNI	CGCG	4 cut(s)	178, 416, 500, 599
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	5 cut(s)	43, 137, 364, 370, 1033
BstMBI	GATC	5 cut(s)	40, 134, 361, 367, 1030
BstMCI	CGRYCG	1 cut(s)	855
BstMWI	GCNNNNNNNGC	5 cut(s)	184, 239, 287, 296, 450
BstUI	CGCG	4 cut(s)	178, 416, 500, 599
BstV1I	GCAGC	1 cut(s)	302
BstX2I	RGATCY	3 cut(s)	40, 134, 1030
BstYI	RGATCY	3 cut(s)	40, 134, 1030
BsuRI	GGCC	1 cut(s)	736
BtsCI	GGATG	3 cut(s)	252, 978, 1034
BtsIMutI	CAGTG	1 cut(s)	558
BtuMI	TCGCGA	1 cut(s)	416
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	597
CciI	TCATGA	1 cut(s)	757
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	539
CseI	GACGC	1 cut(s)	776
Csp6I	GTAC	3 cut(s)	339, 704, 950
CspAI	ACCGGT	1 cut(s)	613
CviAII	CATG	4 cut(s)	379, 509, 758, 797
CviJI	RGCY	6 cut(s)	187, 273, 293, 453, 595, 736
CviKI_1	RGCY	6 cut(s)	187, 273, 293, 453, 595, 736
CviQI	GTAC	3 cut(s)	339, 704, 950
DdeI	CTNAG	3 cut(s)	747, 953, 1025
DpnI	GATC	5 cut(s)	42, 136, 363, 369, 1032
DpnII	GATC	5 cut(s)	40, 134, 361, 367, 1030
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	841
EarI	CTCTTC	1 cut(s)	841
Eco32I	GATATC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	240
EcoRI	GAATTC	2 cut(s)	605, 1090
EcoRV	GATATC	1 cut(s)	661
FaeI	CATG	4 cut(s)	382, 512, 761, 800
FatI	CATG	4 cut(s)	378, 508, 757, 796
FauI	CCCGC	2 cut(s)	493, 604
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	3 cut(s)	259, 965, 1021
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	3 cut(s)	81, 326, 983
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	736
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	1 cut(s)	776
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	382, 512, 761, 800
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	2 cut(s)	58, 721
HindII	GTYRAC	2 cut(s)	58, 721
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	4 cut(s)	69, 97, 583, 869
HpaI	GTTAAC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	5 cut(s)	39, 262, 929, 1054, 1078
Hpy166II	GTNNAC	2 cut(s)	58, 721
Hpy188I	TCNGA	5 cut(s)	385, 535, 543, 878, 1039
Hpy188III	TCNNGA	6 cut(s)	66, 218, 326, 365, 415, 758
Hpy8I	GTNNAC	2 cut(s)	58, 721
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	3 cut(s)	54, 270, 799
HpyCH4III	ACNGT	1 cut(s)	713
HpyCH4IV	ACGT	2 cut(s)	238, 717
HpyCH4V	TGCA	5 cut(s)	155, 290, 389, 671, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	184, 239, 287, 296, 450
HpyF3I	CTNAG	3 cut(s)	747, 953, 1025
HpySE526I	ACGT	2 cut(s)	238, 717
Hsp92II	CATG	4 cut(s)	382, 512, 761, 800
HspAI	GCGC	1 cut(s)	281
KspAI	GTTAAC	1 cut(s)	58
Kzo9I	GATC	5 cut(s)	40, 134, 361, 367, 1030
LguI	GCTCTTC	1 cut(s)	841
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	8 cut(s)	126, 231, 378, 554, 627, 820, 837, 1083
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	5 cut(s)	142, 376, 707, 928, 987
MaeI	CTAG	3 cut(s)	81, 326, 983
MaeII	ACGT	2 cut(s)	238, 717
MaeIII	GTNAC	3 cut(s)	419, 455, 713
MalI	GATC	5 cut(s)	42, 136, 363, 369, 1032
MbiI	CCGCTC	1 cut(s)	851
MboI	GATC	5 cut(s)	40, 134, 361, 367, 1030
MboII	GAAGA	9 cut(s)	118, 159, 233, 316, 522, 858, 947, 1057, 1099
MflI	RGATCY	3 cut(s)	40, 134, 1030
MluCI	AATT	4 cut(s)	438, 544, 605, 1090
MlyI	GAGTC	2 cut(s)	63, 106
MmeI	TCCRAC	1 cut(s)	1062
MnlI	CCTC	7 cut(s)	37, 619, 789, 795, 808, 962, 1033
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	6 cut(s)	8, 36, 57, 201, 405, 881
MspI	CCGG	1 cut(s)	614
MvnI	CGCG	4 cut(s)	178, 416, 500, 599
MwoI	GCNNNNNNNGC	5 cut(s)	184, 239, 287, 296, 450
NdeII	GATC	5 cut(s)	40, 134, 361, 367, 1030
NlaIII	CATG	4 cut(s)	382, 512, 761, 800
NlaIV	GGNNCC	1 cut(s)	965
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	455
NruI	TCGCGA	1 cut(s)	416
NsbI	TGCGCA	1 cut(s)	282
PagI	TCATGA	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	841
PcsI	WCGNNNNNNNCGW	1 cut(s)	995
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	583, 869
PflMI	CCANNNNNTGG	1 cut(s)	144
PinAI	ACCGGT	1 cut(s)	613
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	2 cut(s)	63, 105
PpsI	GAGTC	2 cut(s)	63, 105
Psp1406I	AACGTT	1 cut(s)	717
PspN4I	GGNNCC	1 cut(s)	965
PspPI	GGNCC	1 cut(s)	539
PsuI	RGATCY	3 cut(s)	40, 134, 1030
RruI	TCGCGA	1 cut(s)	416
RsaI	GTAC	3 cut(s)	340, 705, 951
RsaNI	GTAC	3 cut(s)	339, 704, 950
SapI	GCTCTTC	1 cut(s)	841
SaqAI	TTAA	6 cut(s)	8, 36, 57, 201, 405, 881
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	5 cut(s)	40, 134, 361, 367, 1030
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	2 cut(s)	63, 106
SfaNI	GCATC	5 cut(s)	142, 376, 707, 928, 987
SinI	GGWCC	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	4 cut(s)	438, 544, 605, 1090
SsiI	CCGC	7 cut(s)	176, 401, 432, 444, 500, 597, 851
SspMI	CTAG	3 cut(s)	81, 326, 983
TaaI	ACNGT	1 cut(s)	713
TaiI	ACGT	2 cut(s)	241, 720
TaqI	TCGA	3 cut(s)	123, 621, 855
TasI	AATT	4 cut(s)	438, 544, 605, 1090
TatI	WGTACW	1 cut(s)	703
TfiI	GAWTC	2 cut(s)	583, 869
Tru1I	TTAA	6 cut(s)	8, 36, 57, 201, 405, 881
Tru9I	TTAA	6 cut(s)	8, 36, 57, 201, 405, 881
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	5 cut(s)	153, 598, 668, 746, 948
TspRI	CASTG	1 cut(s)	565
Van91I	CCANNNNNTGG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	2 cut(s)	605, 1090
XbaI	TCTAGA	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	3 cut(s)	81, 326, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.