Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012784

Physical Location & Seq

Genomic Coordinates Reverse (-)

11893499 .. 11896480

Gene Structure 2982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATTTGAATATAAACAAGACGACCCCTGTTCTTAGTGACCCTACTACACCAGTAAGTAAAACAAGACTTGGATCATCCTTCCCTTCAGGGAGATTCATGATGAATTCTAGAAAGAAGATTCCTAAACTCGATGATGTTCGATCTAACGGTTGGTTGGACGCGATGATATCTTCGTCTCCACCGCGTAAAAGGCTTGTCAAGGATTTCAATATTGAGATTGCTCCTGAAGATGATTTTTCTCAACGGGCCTGGATGCTCAAGTATCCTTCAGCGATTACCTCGTTTGCGCATATTGCAGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATGGAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGATGCGTGCTGCTGTGAAAGATGTCGCCAAGTACTTCCCAACAGCAATAATTAGTGGTAGAAGCCGTGACAAGGTTTACCAATTGGTAGGGCTAACCGAACTCTATTACGCGGGTAGTCACGGGATGGACATTATGACTCCTGTAAATCCAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCACTGACCAACAGGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATTGAAGAGGTTTATAATAACCTCGTTGAGATAACTAAATGTATCAAAGGTGCAAAAGTAGAGAACCATAAGTTTTGTACTTCTGTACATTACCGTAATGTTGACGAGAAGGACTGGCCACTTGTTGCTCAACGCGTTCATGACCACCTGAAACGATACCCTCGTTTGCGTATAACTCACGGTAGAAAGGTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAGTTTCTGTTAGAGTCTCTCGGATTAAGCAACAACGATGAGTTCCTCCCAATCTTCATCGGAGATGACAAGACCGATGAAGATGCATTCAAGGTACTGAGGGAAGGGAACAGAGGATTTGGAATATTGGTATCGTCTGTACCAAAAGAAAGCAATGCATTTTACTCTCTTAGAGACCCTTCCGAGGTGAAGAAGTTTCTCAAGACTTTGGTGAAATGGGGGAAGATGGAAAGTTCAAAAACAAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004805 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046872 GO:0071704 GO:0071944 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

377

Amino Acids

42.63

Weight (kDa)

8.83

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	111 - 355	7e-66	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12430 AT4G22590
fragaria_vesca	FvH4_5g00270 FvH4_5g00270
prunus_persica	Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202351
rosa_laevigata	RLG00000003607
rosa_multiflora	Rmu_sc0000266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254650
rosa_rugosa	Rorug07G0070000
rosa_samantha	Rh7AG197400 Rh7BG198500 Rh7CG208500 Rh7DG204200
rosa_wichuraiana	Rw7G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
Acc16I	TGCGCA	1 cut(s)	291
AccII	CGCG	5 cut(s)	164, 187, 381, 509, 780
AciI	CCGC	2 cut(s)	185, 509
AclWI	GGATC	3 cut(s)	82, 549, 562
AcoI	YGGCCR	1 cut(s)	761
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	4 cut(s)	72, 249, 255, 582
AfaI	GTAC	5 cut(s)	431, 724, 732, 978, 1023
AfiI	CCNNNNNNNGG	2 cut(s)	469, 1066
AflIII	ACRYGT	1 cut(s)	778
AgsI	TTSAA	5 cut(s)	10, 211, 650, 973, 1119
AjnI	CCWGG	1 cut(s)	251
AloI	GAACNNNNNNTCC	2 cut(s)	340, 372
AluBI	AGCT	2 cut(s)	302, 326
AluI	AGCT	2 cut(s)	302, 326
Alw26I	GTCTC	3 cut(s)	183, 903, 1050
AlwI	GGATC	3 cut(s)	82, 549, 562
AoxI	GGCC	2 cut(s)	249, 761
ApeKI	GCWGC	2 cut(s)	299, 407
ApoI	RAATTY	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	352
AspLEI	GCGC	2 cut(s)	292, 383
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	3 cut(s)	611, 1081, 1105
BaeI	ACNNNNGTAYC	2 cut(s)	793, 826
BalI	TGGCCA	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	311, 394
BccI	CCATC	4 cut(s)	338, 392, 517, 1102
BceAI	ACGGC	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BciT130I	CCWGG	1 cut(s)	253
BciVI	GTATCC	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	183, 903, 1050
BfaI	CTAG	2 cut(s)	111, 335
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	2 cut(s)	300, 408
BlsI	GCNGC	2 cut(s)	301, 409
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	4 cut(s)	246, 385, 390, 955
BpiI	GAAGAC	1 cut(s)	570
BpuEI	CTTGAG	3 cut(s)	245, 288, 1067
BsaI	GGTCTC	1 cut(s)	1050
BsaJI	CCNNGG	1 cut(s)	1065
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 1066
Bse1I	ACTGG	2 cut(s)	53, 764
Bse3DI	GCAATG	1 cut(s)	1042
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	1065
BseGI	GGATG	3 cut(s)	77, 261, 528
BseLI	CCNNNNNNNGG	2 cut(s)	469, 1066
BseMI	GCAATG	1 cut(s)	1042
BseMII	CTCAG	1 cut(s)	971
BseNI	ACTGG	2 cut(s)	53, 764
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	2 cut(s)	311, 394
Bsh1236I	CGCG	5 cut(s)	164, 187, 381, 509, 780
BshFI	GGCC	2 cut(s)	251, 763
BslI	CCNNNNNNNGG	2 cut(s)	469, 1066
BsmAI	GTCTC	3 cut(s)	183, 903, 1050
BsmBI	CGTCTC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	968
BsnI	GGCC	2 cut(s)	251, 763
Bso31I	GGTCTC	1 cut(s)	1050
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	74, 143, 376, 554
BspACI	CCGC	2 cut(s)	185, 509
BspANI	GGCC	2 cut(s)	251, 763
BspCNI	CTCAG	1 cut(s)	972
BspFNI	CGCG	5 cut(s)	164, 187, 381, 509, 780
BspHI	TCATGA	2 cut(s)	99, 784
BspLI	GGNNCC	1 cut(s)	556
BspPI	GGATC	3 cut(s)	82, 549, 562
BspTNI	GGTCTC	1 cut(s)	1050
BsrDI	GCAATG	1 cut(s)	1042
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	53, 764
BssECI	CCNNGG	1 cut(s)	1065
BssMI	GATC	4 cut(s)	74, 143, 376, 554
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	3 cut(s)	152, 740, 827
Bst6I	CTCTTC	1 cut(s)	645
BstAUI	TGTACA	1 cut(s)	730
BstC8I	GCNNGC	2 cut(s)	405, 624
BstDEI	CTNAG	3 cut(s)	35, 980, 1052
BstF5I	GGATG	3 cut(s)	77, 261, 528
BstFNI	CGCG	5 cut(s)	164, 187, 381, 509, 780
BstHHI	GCGC	2 cut(s)	292, 383
BstKTI	GATC	4 cut(s)	77, 146, 379, 557
BstMAI	GTCTC	3 cut(s)	183, 903, 1050
BstMBI	GATC	4 cut(s)	74, 143, 376, 554
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 296, 305, 404
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstUI	CGCG	5 cut(s)	164, 187, 381, 509, 780
BstV1I	GCAGC	2 cut(s)	311, 394
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	251, 763
BtgZI	GCGATG	2 cut(s)	179, 413
BtsCI	GGATG	3 cut(s)	77, 261, 528
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	405, 624
CciI	TCATGA	2 cut(s)	99, 784
CfoI	GCGC	2 cut(s)	292, 383
Cfr13I	GGNCC	1 cut(s)	249
CseI	GACGC	2 cut(s)	170, 836
Csp6I	GTAC	5 cut(s)	430, 723, 731, 977, 1022
CviAII	CATG	3 cut(s)	100, 388, 785
CviJI	RGCY	8 cut(s)	196, 251, 302, 326, 462, 490, 622, 763
CviKI_1	RGCY	8 cut(s)	196, 251, 302, 326, 462, 490, 622, 763
CviQI	GTAC	5 cut(s)	430, 723, 731, 977, 1022
DdeI	CTNAG	3 cut(s)	35, 980, 1052
DpnI	GATC	4 cut(s)	76, 145, 378, 556
DpnII	GATC	4 cut(s)	74, 143, 376, 554
EaeI	YGGCCR	1 cut(s)	761
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco31I	GGTCTC	1 cut(s)	1050
Eco32I	GATATC	1 cut(s)	171
Eco57I	CTGAAG	4 cut(s)	72, 249, 255, 582
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	251
EcoRV	GATATC	1 cut(s)	171
EcoT22I	ATGCAT	2 cut(s)	970, 1042
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	3 cut(s)	103, 391, 788
FatI	CATG	3 cut(s)	99, 387, 784
FauI	CCCGC	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	300, 408
FokI	GGATG	3 cut(s)	64, 268, 535
Fsp4HI	GCNGC	2 cut(s)	300, 408
FspBI	CTAG	2 cut(s)	111, 335
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	2 cut(s)	291, 382
GluI	GCNGC	2 cut(s)	300, 408
HaeIII	GGCC	2 cut(s)	251, 763
HgaI	GACGC	2 cut(s)	170, 836
HhaI	GCGC	2 cut(s)	292, 383
Hin1II	CATG	3 cut(s)	103, 391, 788
Hin6I	GCGC	2 cut(s)	290, 381
HinP1I	GCGC	2 cut(s)	290, 381
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HinfI	GANTC	4 cut(s)	96, 121, 535, 896
HphI	GGTGA	3 cut(s)	611, 1081, 1105
Hpy166II	GTNNAC	3 cut(s)	475, 610, 748
Hpy188I	TCNGA	4 cut(s)	394, 905, 944, 1066
Hpy188III	TCNNGA	6 cut(s)	100, 111, 227, 335, 785, 1084
Hpy8I	GTNNAC	3 cut(s)	475, 610, 748
HpyAV	CCTTC	6 cut(s)	91, 96, 279, 748, 980, 1071
HpyCH4III	ACNGT	3 cut(s)	152, 740, 827
HpyCH4V	TGCA	4 cut(s)	299, 698, 968, 1040
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 296, 305, 404
HpyF3I	CTNAG	3 cut(s)	35, 980, 1052
Hsp92II	CATG	3 cut(s)	103, 391, 788
HspAI	GCGC	2 cut(s)	290, 381
Kzo9I	GATC	4 cut(s)	74, 143, 376, 554
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	311, 394
LweI	GCATC	4 cut(s)	246, 385, 390, 955
MaeI	CTAG	2 cut(s)	111, 335
MaeIII	GTNAC	3 cut(s)	38, 464, 515
MalI	GATC	4 cut(s)	76, 145, 378, 556
MboI	GATC	4 cut(s)	74, 143, 376, 554
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	1 cut(s)	554
MlsI	TGGCCA	1 cut(s)	763
MluCI	AATT	4 cut(s)	106, 447, 479, 571
MluI	ACGCGT	1 cut(s)	778
MluNI	TGGCCA	1 cut(s)	763
MlyI	GAGTC	2 cut(s)	529, 905
MmeI	TCCRAC	1 cut(s)	138
Mox20I	TGGCCA	1 cut(s)	763
Mph1103I	ATGCAT	2 cut(s)	970, 1042
MroXI	GAANNNNTTC	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	763
MseI	TTAA	1 cut(s)	908
Msp20I	TGGCCA	1 cut(s)	763
MspR9I	CCNGG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	968
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	5 cut(s)	164, 187, 381, 509, 780
MwoI	GCNNNNNNNGC	4 cut(s)	193, 296, 305, 404
NdeII	GATC	4 cut(s)	74, 143, 376, 554
NlaIII	CATG	3 cut(s)	103, 391, 788
NlaIV	GGNNCC	1 cut(s)	556
NmuCI	GTSAC	3 cut(s)	38, 464, 515
NsbI	TGCGCA	1 cut(s)	291
NsiI	ATGCAT	2 cut(s)	970, 1042
PagI	TCATGA	2 cut(s)	99, 784
PcsI	WCGNNNNNNNCGW	1 cut(s)	805
PctI	GAATGC	1 cut(s)	968
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	96, 121
PkrI	GCNGC	2 cut(s)	301, 409
PleI	GAGTC	2 cut(s)	529, 904
PpsI	GAGTC	2 cut(s)	529, 904
PsiI	TTATAA	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	554
RsaI	GTAC	5 cut(s)	431, 724, 732, 978, 1023
RsaNI	GTAC	5 cut(s)	430, 723, 731, 977, 1022
SaqAI	TTAA	1 cut(s)	908
SatI	GCNGC	2 cut(s)	300, 408
Sau3AI	GATC	4 cut(s)	74, 143, 376, 554
Sau96I	GGNCC	1 cut(s)	249
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	2 cut(s)	529, 905
ScrFI	CCNGG	1 cut(s)	253
SfaNI	GCATC	4 cut(s)	246, 385, 390, 955
SmlI	CTYRAG	3 cut(s)	260, 303, 1082
SmoI	CTYRAG	3 cut(s)	260, 303, 1082
Sse9I	AATT	4 cut(s)	106, 447, 479, 571
SsiI	CCGC	2 cut(s)	185, 509
SspI	AATATT	2 cut(s)	214, 1008
SspMI	CTAG	2 cut(s)	111, 335
StyD4I	CCNGG	1 cut(s)	251
TaaI	ACNGT	3 cut(s)	152, 740, 827
TaqI	TCGA	3 cut(s)	132, 142, 366
TaqII	GACCGA	1 cut(s)	971
TasI	AATT	4 cut(s)	106, 447, 479, 571
TatI	WGTACW	3 cut(s)	429, 722, 730
TfiI	GAWTC	2 cut(s)	96, 121
Tru1I	TTAA	1 cut(s)	908
Tru9I	TTAA	1 cut(s)	908
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	3 cut(s)	38, 464, 515
TseI	GCWGC	2 cut(s)	299, 407
Tsp45I	GTSAC	3 cut(s)	38, 464, 515
TspDTI	ATGAA	6 cut(s)	88, 119, 625, 773, 928, 975
TspRI	CASTG	1 cut(s)	592
XapI	RAATTY	1 cut(s)	106
XbaI	TCTAGA	2 cut(s)	110, 334
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	2 cut(s)	111, 335
ZrmI	AGTACT	1 cut(s)	431
Zsp2I	ATGCAT	2 cut(s)	970, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.