Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012784

Physical Location & Seq

Genomic Coordinates Reverse (-)

17794657 .. 17796836

Gene Structure 2180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGTTGAAGACAAACCATGCTGCTCCAGTTCTCACTGATCCTGCACCTACTATAAGTAAGTCGAGACTAGGCATCCATTCTAGTTTGTTGCCATATTCACAGCAAGGAGCACCATTCTCTAGCAAGTATATCACAATTCCAAGGAAAAAACCAGGAAAGCTTGATGATGTTTGGTCCAATGGTTGGCTTGATGCCATGAAATCTTCTTCACCTCCCCGAAAGAAGCTCAATAAGGATTTCAGTGTTGAGGTTGCTTCAGATGATAATGACAATGCTTACCTCTCTTGGATGCTTAAGCATCCATCAGCACTCAATTTTTTTGAGCGCATTACAAGTTTCGCAAGGAACAAGAAGATAGCGGTGTTTCTAGATTATGATGGGACTCTTTCACCCATAGTTGATGACCCTGATCGTGCATTAATGTCTGATGCCATGCGCGACGCTGTACGAAATGTTGCAAAGTATTTTCCAACTGCAATCATTAGTGGAAGAAACCGCGATAAGGTTTATGAGTTGGTAGGATTAACAGAACTTTATTATGCTGGAAGTCATGGAATGGACATAATGGGTCCTGTCACTAATACAGACGGTGTGAATTCTACGGACCAGCAGGGCAAGGAGGTAAAGCTTTTCCAGCCTGCTAAAGAGTTTTTACCTATGATCGACGAGGTTTTTAGAACCCTCGTTGAAAATACTAAAGGAATCAAAGGCGCAAAAGTTGAAAATCACAAGTTTTGTGCTTCTGTACATTACCGTAATGTAGATGAGAAGAATTGGTCAACAATTGCTCAACGTGTTCATGATGTCCTAAAAGACTACCCTCGTTTACGATTAACTCATGGGCGGAAGGTTTTAGAGGTCCGCCCTGTAATTGAATGGAACAAGGGAAAAGCAGTTGAATTTCTGCTTGGATCTCTTGGGCTAAATAGTAGGGATGAAGTGCTTTCAATATATATTGGTGATGATAGGACTGATGAAGATGCATTCAAGGTCTTAAAGAAAAAGAACCGAGGATATGGAATTCTGGTATCTCCTATTCCAAAAGAAACCAGTGCCTTTTATTCTCTCAGGGAACCAGCAGAGGTGATGGAATTCCTCAAGGCCTTGGTGAGCTGGAAGGATCAGGAAGAAGCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004805 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046872 GO:0071704 GO:0071944 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

380

Amino Acids

42.9

Weight (kDa)

8.78

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	123 - 360	2.8e-67	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12430 AT4G22590
fragaria_vesca	FvH4_5g00270 FvH4_5g00270
prunus_persica	Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202351
rosa_laevigata	RLG00000003607
rosa_multiflora	Rmu_sc0000266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254650
rosa_rugosa	Rorug07G0070000
rosa_samantha	Rh7AG197400 Rh7BG198500 Rh7CG208500 Rh7DG204200
rosa_wichuraiana	Rw7G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccII	CGCG	2 cut(s)	441, 501
AciI	CCGC	4 cut(s)	362, 499, 847, 865
AclWI	GGATC	3 cut(s)	35, 922, 1131
AcsI	RAATTY	4 cut(s)	598, 902, 1023, 1094
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	450, 750
AfiI	CCNNNNNNNGG	2 cut(s)	186, 505
AflII	CTTAAG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	796
AgsI	TTSAA	7 cut(s)	10, 692, 725, 878, 902, 951, 991
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AluBI	AGCT	4 cut(s)	163, 229, 631, 1116
AluI	AGCT	4 cut(s)	163, 229, 631, 1116
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	3 cut(s)	35, 922, 1131
AoxI	GGCC	1 cut(s)	1104
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	4 cut(s)	598, 902, 1023, 1094
AseI	ATTAAT	1 cut(s)	422
AspLEI	GCGC	3 cut(s)	330, 441, 716
AspS9I	GGNCC	4 cut(s)	177, 572, 607, 862
AsuHPI	GGTGA	5 cut(s)	204, 384, 974, 1099, 1123
AvaII	GGWCC	4 cut(s)	177, 572, 607, 862
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	3 cut(s)	313, 374, 1084
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	4 cut(s)	71, 84, 123, 371
BfrI	CTTAAG	1 cut(s)	296
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	4 cut(s)	177, 572, 607, 862
BmgT120I	GGNCC	4 cut(s)	177, 572, 607, 862
BmiI	GGNNCC	2 cut(s)	573, 1077
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	6 cut(s)	84, 184, 282, 310, 421, 973
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	1085
BsaJI	CCNNGG	3 cut(s)	143, 1012, 1107
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 505
Bse1I	ACTGG	2 cut(s)	29, 1053
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	143, 1012, 1107
BseGI	GGATG	4 cut(s)	75, 297, 301, 943
BseLI	CCNNNNNNNGG	2 cut(s)	186, 505
BseMII	CTCAG	1 cut(s)	1084
BseNI	ACTGG	2 cut(s)	29, 1053
BseXI	GCAGC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	30
Bsh1236I	CGCG	2 cut(s)	441, 501
BshFI	GGCC	1 cut(s)	1106
BsiHKAI	GWGCWC	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	186, 505
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	986
BsnI	GGCC	1 cut(s)	1106
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp1407I	TGTACA	1 cut(s)	748
Bsp143I	GATC	5 cut(s)	40, 412, 663, 914, 1123
BspACI	CCGC	4 cut(s)	362, 499, 847, 865
BspANI	GGCC	1 cut(s)	1106
BspCNI	CTCAG	1 cut(s)	1083
BspFNI	CGCG	2 cut(s)	441, 501
BspHI	TCATGA	1 cut(s)	802
BspLI	GGNNCC	2 cut(s)	573, 1077
BspPI	GGATC	3 cut(s)	35, 922, 1131
BspTI	CTTAAG	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	2 cut(s)	29, 1053
BssECI	CCNNGG	3 cut(s)	143, 1012, 1107
BssMI	GATC	5 cut(s)	40, 412, 663, 914, 1123
BssT1I	CCWWGG	2 cut(s)	143, 1107
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	593, 758
BstAFI	CTTAAG	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	748
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	1 cut(s)	1070
BstF5I	GGATG	4 cut(s)	75, 297, 301, 943
BstFNI	CGCG	2 cut(s)	441, 501
BstHHI	GCGC	3 cut(s)	330, 441, 716
BstKTI	GATC	5 cut(s)	43, 415, 666, 917, 1126
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	40, 412, 663, 914, 1123
BstMWI	GCNNNNNNNGC	1 cut(s)	637
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	2 cut(s)	441, 501
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	914
BsuRI	GGCC	1 cut(s)	1106
BtsCI	GGATG	4 cut(s)	75, 297, 301, 943
BtsIMutI	CAGTG	3 cut(s)	36, 250, 1060
Cac8I	GCNNGC	1 cut(s)	642
CciI	TCATGA	1 cut(s)	802
CfoI	GCGC	3 cut(s)	330, 441, 716
Cfr13I	GGNCC	4 cut(s)	177, 572, 607, 862
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	449, 749
CviAII	CATG	6 cut(s)	20, 199, 436, 554, 803, 842
CviJI	RGCY	9 cut(s)	163, 190, 229, 631, 640, 925, 1106, 1116, 1136
CviKI_1	RGCY	9 cut(s)	163, 190, 229, 631, 640, 925, 1106, 1116, 1136
CviQI	GTAC	2 cut(s)	449, 749
DdeI	CTNAG	1 cut(s)	1070
DpnI	GATC	5 cut(s)	42, 414, 665, 916, 1125
DpnII	GATC	5 cut(s)	40, 412, 663, 914, 1123
EciI	GGCGGA	2 cut(s)	854, 862
Eco130I	CCWWGG	2 cut(s)	143, 1107
Eco147I	AGGCCT	1 cut(s)	1106
Eco47I	GGWCC	4 cut(s)	177, 572, 607, 862
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRI	GAATTC	3 cut(s)	598, 1023, 1094
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	143, 1107
EcoT22I	ATGCAT	1 cut(s)	988
ErhI	CCWWGG	2 cut(s)	143, 1107
FaeI	CATG	6 cut(s)	23, 202, 439, 557, 806, 845
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	6 cut(s)	19, 198, 435, 553, 802, 841
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	4 cut(s)	62, 288, 304, 950
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	4 cut(s)	71, 84, 123, 371
GlaI	GCGC	3 cut(s)	329, 440, 715
GluI	GCNGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	1106
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	3 cut(s)	330, 441, 716
Hin1II	CATG	6 cut(s)	23, 202, 439, 557, 806, 845
Hin6I	GCGC	3 cut(s)	328, 439, 714
HinP1I	GCGC	3 cut(s)	328, 439, 714
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HindIII	AAGCTT	2 cut(s)	161, 629
HinfI	GANTC	2 cut(s)	385, 705
HphI	GGTGA	5 cut(s)	204, 384, 974, 1099, 1123
Hpy166II	GTNNAC	2 cut(s)	783, 830
Hpy188I	TCNGA	2 cut(s)	262, 430
Hpy188III	TCNNGA	4 cut(s)	66, 371, 803, 1127
Hpy8I	GTNNAC	2 cut(s)	783, 830
Hpy99I	CGWCG	2 cut(s)	446, 671
HpyAV	CCTTC	2 cut(s)	844, 1114
HpyCH4III	ACNGT	2 cut(s)	593, 758
HpyCH4IV	ACGT	1 cut(s)	796
HpyCH4V	TGCA	5 cut(s)	47, 419, 461, 479, 986
HpyF10VI	GCNNNNNNNGC	1 cut(s)	637
HpyF3I	CTNAG	1 cut(s)	1070
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	6 cut(s)	23, 202, 439, 557, 806, 845
HspAI	GCGC	3 cut(s)	328, 439, 714
Kzo9I	GATC	5 cut(s)	40, 412, 663, 914, 1123
LmnI	GCTCC	2 cut(s)	31, 110
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	6 cut(s)	84, 184, 282, 310, 421, 973
MaeI	CTAG	4 cut(s)	71, 84, 123, 371
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	5 cut(s)	42, 414, 665, 916, 1125
MboI	GATC	5 cut(s)	40, 412, 663, 914, 1123
MboII	GAAGA	8 cut(s)	22, 198, 201, 367, 504, 784, 992, 1142
MfeI	CAATTG	2 cut(s)	786, 1138
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	497
Mph1103I	ATGCAT	1 cut(s)	988
MseI	TTAA	5 cut(s)	297, 422, 527, 836, 998
MspCI	CTTAAG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	2 cut(s)	786, 1138
Mva1269I	GAATGC	1 cut(s)	986
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	2 cut(s)	441, 501
MwoI	GCNNNNNNNGC	1 cut(s)	637
NdeII	GATC	5 cut(s)	40, 412, 663, 914, 1123
NlaIII	CATG	6 cut(s)	23, 202, 439, 557, 806, 845
NlaIV	GGNNCC	2 cut(s)	573, 1077
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	988
PagI	TCATGA	1 cut(s)	802
PceI	AGGCCT	1 cut(s)	1106
PctI	GAATGC	1 cut(s)	986
PfeI	GAWTC	1 cut(s)	705
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	572
PshBI	ATTAAT	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	573, 1077
PspPI	GGNCC	4 cut(s)	177, 572, 607, 862
PspPPI	RGGWCCY	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	914
RsaI	GTAC	2 cut(s)	450, 750
RsaNI	GTAC	2 cut(s)	449, 749
SaqAI	TTAA	5 cut(s)	297, 422, 527, 836, 998
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	5 cut(s)	40, 412, 663, 914, 1123
Sau96I	GGNCC	4 cut(s)	177, 572, 607, 862
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	115
SfaNI	GCATC	6 cut(s)	84, 184, 282, 310, 421, 973
SinI	GGWCC	4 cut(s)	177, 572, 607, 862
SmlI	CTYRAG	2 cut(s)	296, 1100
SmoI	CTYRAG	2 cut(s)	296, 1100
SseBI	AGGCCT	1 cut(s)	1106
SsiI	CCGC	4 cut(s)	362, 499, 847, 865
SspMI	CTAG	4 cut(s)	71, 84, 123, 371
StuI	AGGCCT	1 cut(s)	1106
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	2 cut(s)	143, 1107
TaaI	ACNGT	2 cut(s)	593, 758
TaiI	ACGT	1 cut(s)	799
TaqI	TCGA	2 cut(s)	65, 666
TatI	WGTACW	1 cut(s)	748
TfiI	GAWTC	1 cut(s)	705
Tru1I	TTAA	5 cut(s)	297, 422, 527, 836, 998
Tru9I	TTAA	5 cut(s)	297, 422, 527, 836, 998
TscAI	CASTG	3 cut(s)	43, 250, 1060
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	4 cut(s)	215, 791, 954, 993
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	3 cut(s)	43, 250, 1060
Van91I	CCANNNNNTGG	1 cut(s)	186
Vha464I	CTTAAG	1 cut(s)	296
VpaK11BI	GGWCC	4 cut(s)	177, 572, 607, 862
VspI	ATTAAT	1 cut(s)	422
XapI	RAATTY	4 cut(s)	598, 902, 1023, 1094
XbaI	TCTAGA	1 cut(s)	370
XspI	CTAG	4 cut(s)	71, 84, 123, 371
Zsp2I	ATGCAT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.