Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012784

Physical Location & Seq

Genomic Coordinates Forward (+)

8941701 .. 8947141

Gene Structure 5441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G075400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGTTGAAGACAAATCATGCTGCTTCGGTCCTCACTGACCCTCCACCGATAAGTAAGTCAAGACTAGGCCTCCATTCTAGTTTGTTGCCATACTCACAGCAAGGAGCATCATTCTCCTCTGGCAAGTACATTAACATCCCAAGGAAAAAGCCAGGAAAGCTCGATGATGTTCGGTCCAATGGTTGGCTTGATGCCATGAAATCCTCTTCACCTCCCCGGAAGAAGCTCATTAAGGATTTCAATTTTGAGGTTGCTTCAGATGATGTTGATAATGCTTACTGCTCTTGGATGCTTAAGCATCCATCAGCACTGAATTCGTTCGAGCGGATTACAAATTTTGCAAGGAACAAGAAGATAGCAATATTTCTAGATTATGATGGGACTCTTTCCCCGATAGTTGATGACCCTGACCGTGCAATAATGTCTAATGCTATGCGTTCTGCTGTAAGAAACGTTGCGAAGCATTTTCCAACTGCTATTATTAGTGGAAGAAGCCGCGATAAGGTATATGATTTGGTAGGACTAACAGAACTTTACTATGCTGGTAGTCATGGAATGGACATAATGGGTCCTGTCACTAATACAGACTCCAATGACCATCCAAACTGTGTGAAATCTACTGACCAACAGGGTAAGGAGGTAAACCTCTTCCAGCCTGCTAGGGAGTTTATACCTATGATCGACGAGGTTTTTAGAACCCTCGTCGAGAATACTAAAGGGATCAAAGGTGCAAAAGTTGAAAATCACAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAAAAATTGGTCTACAATTGCACAAAGTGTTCATGATATTCTCAAAGACTACCCTCGTTTACGATTAACTCATGGGCGGAAGGTTTTAGAGGTCCGCCCTGTTATTGACTGGAACAAGGGAAAAGCAGTTGAATTTCTGCTTGAATCTCTTGGGCTAAATGGTAGGGATGATGTGCTCCCAATTTATATTGGTGATGATAGGACCGATGAAGATGCATTCAAGTTCTTGAAGAAGAATAAGAAGCGTGGTTATGGAATTCTGGTGTCGCCGGTTCCAAAAGAAACCAGTGCCTTCTACTCTCTCAAGGACCCATCAGAGGTCATGGAATTTCTCAAGTCCTTGGTGAGATGGAAGGAGGAGGAGGAAGAAGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004805 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046872 GO:0071704 GO:0071944 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

389

Amino Acids

43.85

Weight (kDa)

8.67

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12430 AT4G22590
fragaria_vesca	FvH4_5g00270 FvH4_5g00270
prunus_persica	Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1 Prupe.5G075400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202351
rosa_laevigata	RLG00000003607
rosa_multiflora	Rmu_sc0000266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254650
rosa_rugosa	Rorug07G0070000
rosa_samantha	Rh7AG197400 Rh7BG198500 Rh7CG208500 Rh7DG204200
rosa_wichuraiana	Rw7G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	800
AccII	CGCG	1 cut(s)	501
AciI	CCGC	4 cut(s)	328, 499, 865, 883
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	1 cut(s)	731
AcsI	RAATTY	5 cut(s)	316, 337, 920, 1044, 1115
AcuI	CTGAAG	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	815
AfaI	GTAC	2 cut(s)	131, 768
AfiI	CCNNNNNNNGG	3 cut(s)	186, 505, 1105
AflII	CTTAAG	1 cut(s)	296
AgsI	TTSAA	7 cut(s)	10, 244, 743, 920, 932, 1009, 1018
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	163, 229
AluI	AGCT	2 cut(s)	163, 229
Alw21I	GWGCWC	1 cut(s)	966
AlwI	GGATC	1 cut(s)	731
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	5 cut(s)	316, 337, 920, 1044, 1115
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	6 cut(s)	31, 177, 572, 880, 990, 1096
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	204, 992, 1144
AvaII	GGWCC	6 cut(s)	31, 177, 572, 880, 990, 1096
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	966
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	5 cut(s)	313, 374, 609, 1108, 1131
BcgI	CGANNNNNNTGC	4 cut(s)	300, 334, 983, 1017
BciT130I	CCWGG	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	4 cut(s)	68, 81, 371, 663
BfrI	CTTAAG	1 cut(s)	296
BisI	GCNGC	2 cut(s)	24, 499
BlsI	GCNGC	2 cut(s)	25, 500
Bme1390I	CCNGG	2 cut(s)	156, 220
Bme18I	GGWCC	6 cut(s)	31, 177, 572, 880, 990, 1096
BmgT120I	GGNCC	6 cut(s)	31, 177, 572, 880, 990, 1096
BmiI	GGNNCC	3 cut(s)	573, 1062, 1098
BmrFI	CCNGG	2 cut(s)	156, 220
BmsI	GCATC	5 cut(s)	119, 184, 282, 310, 991
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	1076, 1106
BpuMI	CCSGG	1 cut(s)	220
BsaJI	CCNNGG	3 cut(s)	143, 218, 1128
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 57, 58, 87
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 505, 1105
Bse118I	RCCGGY	1 cut(s)	1057
Bse1I	ACTGG	2 cut(s)	902, 1074
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	143, 218, 1128
BseGI	GGATG	5 cut(s)	138, 297, 301, 601, 961
BseLI	CCNNNNNNNGG	3 cut(s)	186, 505, 1105
BseNI	ACTGG	2 cut(s)	902, 1074
BseRI	GAGGAG	3 cut(s)	109, 1160, 1163
BseXI	GCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	966
BsiSI	CCGG	2 cut(s)	220, 1058
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	186, 505, 1105
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	1004
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	966
Bsp1407I	TGTACA	1 cut(s)	766
Bsp143I	GATC	2 cut(s)	681, 723
BspACI	CCGC	4 cut(s)	328, 499, 865, 883
BspANI	GGCC	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	3 cut(s)	573, 1062, 1098
BspPI	GGATC	1 cut(s)	731
BspTI	CTTAAG	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	1057
BsrGI	TGTACA	1 cut(s)	766
BsrI	ACTGG	2 cut(s)	902, 1074
BssAI	RCCGGY	1 cut(s)	1057
BssECI	CCNNGG	3 cut(s)	143, 218, 1128
BssMI	GATC	2 cut(s)	681, 723
BssT1I	CCWWGG	2 cut(s)	143, 1128
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	416, 611, 776
Bst6I	CTCTTC	2 cut(s)	214, 656
BstAFI	CTTAAG	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	766
BstC8I	GCNNGC	1 cut(s)	660
BstF5I	GGATG	5 cut(s)	138, 297, 301, 601, 961
BstFNI	CGCG	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	2 cut(s)	684, 726
BstMBI	GATC	2 cut(s)	681, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	154, 218
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	5 cut(s)	138, 297, 301, 601, 961
BtsIMutI	CAGTG	3 cut(s)	36, 311, 1081
Cac8I	GCNNGC	1 cut(s)	660
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	1 cut(s)	1057
Cfr13I	GGNCC	6 cut(s)	31, 177, 572, 880, 990, 1096
Csp6I	GTAC	2 cut(s)	130, 767
CviAII	CATG	6 cut(s)	20, 199, 554, 821, 860, 1111
CviJI	RGCY	9 cut(s)	72, 154, 163, 190, 229, 498, 658, 943, 1160
CviKI_1	RGCY	9 cut(s)	72, 154, 163, 190, 229, 498, 658, 943, 1160
CviQI	GTAC	2 cut(s)	130, 767
DpnI	GATC	2 cut(s)	683, 725
DpnII	GATC	2 cut(s)	681, 723
DraIII	CACNNNGTG	1 cut(s)	815
Eam1104I	CTCTTC	2 cut(s)	214, 656
EarI	CTCTTC	2 cut(s)	214, 656
EciI	GGCGGA	2 cut(s)	872, 880
Eco130I	CCWWGG	2 cut(s)	143, 1128
Eco147I	AGGCCT	1 cut(s)	72
Eco47I	GGWCC	6 cut(s)	31, 177, 572, 880, 990, 1096
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	2 cut(s)	572, 1096
EcoRI	GAATTC	2 cut(s)	316, 1044
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	143, 1128
EcoT22I	ATGCAT	1 cut(s)	1006
ErhI	CCWWGG	2 cut(s)	143, 1128
FaeI	CATG	6 cut(s)	23, 202, 557, 824, 863, 1114
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	6 cut(s)	19, 198, 553, 820, 859, 1110
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	2 cut(s)	24, 499
FokI	GGATG	5 cut(s)	125, 288, 304, 588, 968
Fsp4HI	GCNGC	2 cut(s)	24, 499
FspBI	CTAG	4 cut(s)	68, 81, 371, 663
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	2 cut(s)	24, 499
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	220, 1058
HhaI	GCGC	1 cut(s)	761
Hin1II	CATG	6 cut(s)	23, 202, 557, 824, 863, 1114
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HinfI	GANTC	3 cut(s)	385, 590, 932
HpaII	CCGG	2 cut(s)	220, 1058
HphI	GGTGA	3 cut(s)	204, 992, 1144
Hpy166II	GTNNAC	3 cut(s)	646, 801, 848
Hpy188I	TCNGA	2 cut(s)	262, 1105
Hpy188III	TCNNGA	5 cut(s)	63, 371, 709, 821, 1015
Hpy8I	GTNNAC	3 cut(s)	646, 801, 848
Hpy99I	CGWCG	2 cut(s)	689, 710
HpyAV	CCTTC	3 cut(s)	862, 1090, 1135
HpyCH4III	ACNGT	3 cut(s)	416, 611, 776
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	5 cut(s)	344, 419, 734, 809, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	6 cut(s)	23, 202, 557, 824, 863, 1114
HspAI	GCGC	1 cut(s)	759
Kzo9I	GATC	2 cut(s)	681, 723
LmnI	GCTCC	2 cut(s)	107, 969
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	5 cut(s)	119, 184, 282, 310, 991
MaeI	CTAG	4 cut(s)	68, 81, 371, 663
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	2 cut(s)	683, 725
MbiI	CCGCTC	1 cut(s)	328
MboI	GATC	2 cut(s)	681, 723
MfeI	CAATTG	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	966
MlyI	GAGTC	2 cut(s)	379, 584
MmeI	TCCRAC	1 cut(s)	497
Mph1103I	ATGCAT	1 cut(s)	1006
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	5 cut(s)	135, 234, 297, 854, 1165
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	2 cut(s)	220, 1058
MspR9I	CCNGG	2 cut(s)	156, 220
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	1004
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	2 cut(s)	681, 723
NlaIII	CATG	6 cut(s)	23, 202, 557, 824, 863, 1114
NlaIV	GGNNCC	3 cut(s)	573, 1062, 1098
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	1006
PagI	TCATGA	1 cut(s)	820
PceI	AGGCCT	1 cut(s)	72
PctI	GAATGC	1 cut(s)	1004
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	932
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	25, 500
PleI	GAGTC	2 cut(s)	379, 584
PpsI	GAGTC	2 cut(s)	379, 584
PpuMI	RGGWCCY	2 cut(s)	572, 1096
Psp1406I	AACGTT	1 cut(s)	456
Psp5II	RGGWCCY	2 cut(s)	572, 1096
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	573, 1062, 1098
PspPI	GGNCC	6 cut(s)	31, 177, 572, 880, 990, 1096
PspPPI	RGGWCCY	2 cut(s)	572, 1096
RsaI	GTAC	2 cut(s)	131, 768
RsaNI	GTAC	2 cut(s)	130, 767
SaqAI	TTAA	5 cut(s)	135, 234, 297, 854, 1165
SatI	GCNGC	2 cut(s)	24, 499
Sau3AI	GATC	2 cut(s)	681, 723
Sau96I	GGNCC	6 cut(s)	31, 177, 572, 880, 990, 1096
SchI	GAGTC	2 cut(s)	379, 584
ScrFI	CCNGG	2 cut(s)	156, 220
SduI	GDGCHC	1 cut(s)	966
SfaNI	GCATC	5 cut(s)	119, 184, 282, 310, 991
SinI	GGWCC	6 cut(s)	31, 177, 572, 880, 990, 1096
SmlI	CTYRAG	3 cut(s)	296, 1091, 1121
SmoI	CTYRAG	3 cut(s)	296, 1091, 1121
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	4 cut(s)	328, 499, 865, 883
SspI	AATATT	1 cut(s)	366
SspMI	CTAG	4 cut(s)	68, 81, 371, 663
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	154, 218
StyI	CCWWGG	2 cut(s)	143, 1128
TaaI	ACNGT	3 cut(s)	416, 611, 776
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	4 cut(s)	165, 324, 684, 708
TaqII	GACCGA	3 cut(s)	19, 165, 1007
TatI	WGTACW	2 cut(s)	129, 766
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	1 cut(s)	932
Tru1I	TTAA	5 cut(s)	135, 234, 297, 854, 1165
Tru9I	TTAA	5 cut(s)	135, 234, 297, 854, 1165
TscAI	CASTG	3 cut(s)	43, 318, 1081
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	3 cut(s)	215, 809, 1011
TspRI	CASTG	3 cut(s)	43, 318, 1081
Van91I	CCANNNNNTGG	1 cut(s)	186
Vha464I	CTTAAG	1 cut(s)	296
VpaK11BI	GGWCC	6 cut(s)	31, 177, 572, 880, 990, 1096
XapI	RAATTY	5 cut(s)	316, 337, 920, 1044, 1115
XbaI	TCTAGA	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	4 cut(s)	68, 81, 371, 663
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.