Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015499

Physical Location & Seq

Genomic Coordinates Forward (+)

8397693 .. 8400226

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAAGAAACAGCACTGACAAAAGATCAGATCACTGAGTTCAAAGAAGCCTTTTGTCTCTTCGACAAAGACGGCGACGGTTGTATAACGGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGGATCAGAATCCGACAGAACAAGAACTTCATGATATCATCACTGAGATTGATTCTGATAGCAACGGCACCATTGAATTTGCTGAGTTTCTCAACCTCATGGCCAAAAAACTTCAGGAAAGTGATGCGGAGGAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGATACATCTCTGCCAGTGAGTTGAGTCATGTAATGATAAATCTAGGAGAAAAGCTAACAGATGAAGAAGTTGAACAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATGAATTTGTCAAGATGATGATCAACATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0007154 GO:0007165 GO:0008150 GO:0009593 GO:0009987 GO:0010035 GO:0010038 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051606 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_7

Protein Analysis

151

Amino Acids

17.16

Weight (kDa)

4.05

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	9 - 56	5.1e-09	EF-hand domain pair
EF-hand_8	PF13833	9 - 58	2e-09	EF-hand domain pair
EF-hand_1	PF00036	31 - 58	4.4e-06	EF hand domain
EF-hand_7	PF13499	66 - 129	6.5e-22	EF-hand domain pair
AIF-1	PF21008	67 - 130	8.3e-06	Allograft inflammatory factor 1
EF-hand_1	PF00036	68 - 95	1.4e-08	EF hand domain
EF-hand_6	PF13405	68 - 97	1.4e-08	EF-hand domain
EF-hand_5	PF13202	69 - 93	4.4e-06	EF hand
EF-hand_9	PF14658	71 - 129	1.9e-06	EF-hand domain
EF-hand_8	PF13833	84 - 129	3.8e-09	EF-hand domain pair
EF-hand_1	PF00036	104 - 130	1e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14640
fragaria_vesca	FvH4_2g22870
malus_domestica	MD03G1257100.v1.1 MD11G1277800.v1.1
prunus_persica	Prupe.8G234000_v2.0.a1
pyrus_communis	pycom03g20380 pycom11g24560
rosa_chinensis	RchiOBHm_Chr6g0289811
rosa_laevigata	RLG00000012266
rosa_roxburghii	Rroxscaffold_7G00177540 Rroxscaffold_7G00178060
rosa_rugosa	Rorug06G0207100
rosa_samantha	Rh6BG325800 Rh6CG331800 Rh6DG317100
rosa_wichuraiana	Rw6G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	106, 132
AcoI	YGGCCR	2 cut(s)	222, 406
AcsI	RAATTY	2 cut(s)	197, 425
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	4 cut(s)	43, 197, 274, 371
AluBI	AGCT	2 cut(s)	259, 352
AluI	AGCT	2 cut(s)	259, 352
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	106, 132
AoxI	GGCC	2 cut(s)	222, 406
ApoI	RAATTY	2 cut(s)	197, 425
AsuHPI	GGTGA	1 cut(s)	413
BalI	TGGCCA	2 cut(s)	224, 408
BanI	GGYRCC	1 cut(s)	188
BccI	CCATC	2 cut(s)	392, 398
BceAI	ACGGC	2 cut(s)	88, 202
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	1 cut(s)	235
BsaBI	GATNNNNATC	2 cut(s)	129, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	312
Bse8I	GATNNNNATC	2 cut(s)	129, 440
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	2 cut(s)	129, 440
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	27, 156, 195
BseNI	ACTGG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	224, 408
BshNI	GGYRCC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	224, 408
Bsp143I	GATC	5 cut(s)	25, 30, 111, 124, 441
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	2 cut(s)	224, 408
BspCNI	CTCAG	3 cut(s)	28, 157, 196
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	106, 132
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	312
BssMI	GATC	5 cut(s)	25, 30, 111, 124, 441
Bst4CI	ACNGT	3 cut(s)	80, 91, 109
Bst6I	CTCTTC	2 cut(s)	65, 249
BstDEI	CTNAG	3 cut(s)	36, 165, 204
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	5 cut(s)	28, 33, 114, 127, 444
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	5 cut(s)	25, 30, 111, 124, 441
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	224, 408
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	5 cut(s)	14, 33, 114, 162, 319
CciI	TCATGA	1 cut(s)	151
CviAII	CATG	3 cut(s)	152, 220, 326
CviJI	RGCY	5 cut(s)	50, 224, 259, 352, 408
CviKI_1	RGCY	5 cut(s)	50, 224, 259, 352, 408
DdeI	CTNAG	3 cut(s)	36, 165, 204
DpnI	GATC	5 cut(s)	27, 32, 113, 126, 443
DpnII	GATC	5 cut(s)	25, 30, 111, 124, 441
EaeI	YGGCCR	2 cut(s)	222, 406
Eam1104I	CTCTTC	2 cut(s)	65, 249
EarI	CTCTTC	2 cut(s)	65, 249
Eco32I	GATATC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	157
FaeI	CATG	3 cut(s)	155, 223, 329
FaiI	YATR	5 cut(s)	86, 153, 221, 327, 420
FatI	CATG	3 cut(s)	151, 219, 325
FbaI	TGATCA	1 cut(s)	441
FokI	GGATG	1 cut(s)	410
FspBI	CTAG	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	224, 408
Hin1II	CATG	3 cut(s)	155, 223, 329
HinfI	GANTC	3 cut(s)	130, 173, 322
HphI	GGTGA	1 cut(s)	413
Hpy188I	TCNGA	4 cut(s)	30, 129, 135, 178
Hpy188III	TCNNGA	3 cut(s)	152, 236, 433
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	80, 91, 109
HpyCH4V	TGCA	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	36, 165, 204
Hsp92II	CATG	3 cut(s)	155, 223, 329
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	25, 30, 111, 124, 441
LguI	GCTCTTC	1 cut(s)	249
LpnPI	CCDG	2 cut(s)	221, 325
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	341
MalI	GATC	5 cut(s)	27, 32, 113, 126, 443
MboI	GATC	5 cut(s)	25, 30, 111, 124, 441
MboII	GAAGA	5 cut(s)	17, 52, 107, 266, 374
MlsI	TGGCCA	2 cut(s)	224, 408
MluCI	AATT	3 cut(s)	197, 415, 425
MluNI	TGGCCA	2 cut(s)	224, 408
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	102, 158
MnlI	CCTC	3 cut(s)	227, 244, 379
Mox20I	TGGCCA	2 cut(s)	224, 408
MscI	TGGCCA	2 cut(s)	224, 408
Msp20I	TGGCCA	2 cut(s)	224, 408
Mva1269I	GAATGC	1 cut(s)	269
NdeII	GATC	5 cut(s)	25, 30, 111, 124, 441
NlaIII	CATG	3 cut(s)	155, 223, 329
NlaIV	GGNNCC	1 cut(s)	190
PagI	TCATGA	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	249
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	130, 173
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	190
SapI	GCTCTTC	1 cut(s)	249
Sau3AI	GATC	5 cut(s)	25, 30, 111, 124, 441
SchI	GAGTC	1 cut(s)	331
SetI	ASST	3 cut(s)	219, 261, 354
SfaNI	GCATC	1 cut(s)	235
Sse9I	AATT	3 cut(s)	197, 415, 425
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	341
TaaI	ACNGT	3 cut(s)	80, 91, 109
TaqI	TCGA	1 cut(s)	63
TasI	AATT	3 cut(s)	197, 415, 425
TfiI	GAWTC	2 cut(s)	130, 173
TscAI	CASTG	5 cut(s)	21, 40, 114, 169, 319
TspDTI	ATGAA	3 cut(s)	140, 375, 438
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	5 cut(s)	21, 40, 114, 169, 319
XapI	RAATTY	2 cut(s)	197, 425
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.