Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015499

Physical Location & Seq

Genomic Coordinates Forward (+)

39490681 .. 39491670

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1277800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCAGAGGCATTGACAGAAGGTCAGATTGCTGAGTTCCAGGAAGCCTTCTGCCTCATCGACAAGGATTCAGATGGACTTATTAGCTTGGAAGAACTAGCTACAGTGATCCAGTCACTGGATCAACGTCCCTCAAAAGAAGAAATCCGGGACATGATTAATGAGATTGGTGGTGATGGAAATGGGACCATAGATTTTGAAGAGTTCTTGAATATTATGTCAAGAAAGATGAAGGAAAATGCTGCTGAGGAGCTCAAAGAAGCCTTCAAAGTATTTGACAGAGACCAAGATGGCTACATTTCAGCCTTTGAGTTGAGACAAGTGATGATAAATTTGGGAGAAAGATTGAGTGATGAAGAGGTTGAACAAATGATCAGAGAAGCTGATTTGGATGGTGATGGTCTAGTTAGCTATGAAGAATTTGCAAGGATGATGCTGCTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009593 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0019722 GO:0019932 GO:0023052 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051606 GO:0051716 GO:0065007 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

149

Amino Acids

16.84

Weight (kDa)

4.09

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	12 - 74	2.4e-14	EF-hand domain pair
EF-hand_1	PF00036	12 - 39	1.7e-06	EF hand domain
EF-hand_6	PF13405	12 - 40	6.9e-06	EF-hand domain
EF-hand_8	PF13833	24 - 75	4.8e-07	EF-hand domain pair
EF-hand_1	PF00036	48 - 75	1.8e-06	EF hand domain
AIF-1	PF21008	81 - 146	3.1e-06	Allograft inflammatory factor 1
EF-hand_7	PF13499	83 - 145	2.7e-19	EF-hand domain pair
EF-hand_1	PF00036	84 - 111	1.8e-08	EF hand domain
EF-hand_6	PF13405	84 - 113	6.8e-09	EF-hand domain
EF-hand_5	PF13202	85 - 109	2.4e-07	EF hand
EF-hand_8	PF13833	105 - 145	8.4e-08	EF-hand domain pair
EF-hand_1	PF00036	120 - 145	7e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14640
fragaria_vesca	FvH4_2g22870
malus_domestica	MD03G1257100.v1.1 MD11G1277800.v1.1
prunus_persica	Prupe.8G234000_v2.0.a1
pyrus_communis	pycom03g20380 pycom11g24560
rosa_chinensis	RchiOBHm_Chr6g0289811
rosa_laevigata	RLG00000012266
rosa_roxburghii	Rroxscaffold_7G00177540 Rroxscaffold_7G00178060
rosa_rugosa	Rorug06G0207100
rosa_samantha	Rh6BG325800 Rh6CG331800 Rh6DG317100
rosa_wichuraiana	Rw6G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AclWI	GGATC	2 cut(s)	103, 129
AcsI	RAATTY	2 cut(s)	331, 419
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	200, 211, 268, 365
AhdI	GACNNNNNGTC	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	5 cut(s)	87, 101, 253, 383, 411
AluI	AGCT	5 cut(s)	87, 101, 253, 383, 411
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	2 cut(s)	276, 310
AlwI	GGATC	2 cut(s)	103, 129
AlwNI	CAGNNNCTG	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	242, 436
ApoI	RAATTY	2 cut(s)	331, 419
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	185, 407
AvaII	GGWCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	229, 423
BccI	CCATC	5 cut(s)	68, 170, 284, 386, 392
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	276, 310
BfaI	CTAG	2 cut(s)	98, 404
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	243, 437
BlsI	GCNGC	2 cut(s)	244, 438
Bme1390I	CCNGG	2 cut(s)	41, 149
Bme18I	GGWCC	1 cut(s)	186
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	41, 149
BmsI	GCATC	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	112, 123
BseBI	CCWGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	397, 435
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	24, 237
BseNI	ACTGG	2 cut(s)	112, 123
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	229, 423
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	3 cut(s)	114, 164, 199
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	276, 310
BsmFI	GGGAC	3 cut(s)	114, 164, 199
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	108, 121, 372
BspCNI	CTCAG	2 cut(s)	25, 238
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	103, 129
BspTNI	GGTCTC	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	112, 123
BssMI	GATC	3 cut(s)	108, 121, 372
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	195, 351
BstDEI	CTNAG	2 cut(s)	33, 246
BstF5I	GGATG	2 cut(s)	397, 435
BstKTI	GATC	3 cut(s)	111, 124, 375
BstMAI	GTCTC	2 cut(s)	276, 310
BstMBI	GATC	3 cut(s)	108, 121, 372
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	39, 147
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	229, 423
BtsCI	GGATG	2 cut(s)	397, 435
BtsIMutI	CAGTG	2 cut(s)	111, 116
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	186
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	9 cut(s)	47, 87, 101, 253, 263, 294, 305, 383, 411
CviKI_1	RGCY	9 cut(s)	47, 87, 101, 253, 263, 294, 305, 383, 411
DdeI	CTNAG	2 cut(s)	33, 246
DpnI	GATC	3 cut(s)	110, 123, 374
DpnII	GATC	3 cut(s)	108, 121, 372
DriI	GACNNNNNGTC	1 cut(s)	21
Eam1104I	CTCTTC	2 cut(s)	195, 351
Eam1105I	GACNNNNNGTC	1 cut(s)	21
EarI	CTCTTC	2 cut(s)	195, 351
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	155, 191, 218, 414
FaqI	GGGAC	3 cut(s)	114, 164, 199
FatI	CATG	1 cut(s)	153
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	243, 437
FokI	GGATG	2 cut(s)	404, 442
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	243, 437
FspBI	CTAG	2 cut(s)	98, 404
GluI	GCNGC	2 cut(s)	243, 437
HapII	CCGG	1 cut(s)	148
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	2 cut(s)	185, 407
Hpy188I	TCNGA	3 cut(s)	27, 73, 377
Hpy188III	TCNNGA	2 cut(s)	208, 222
HpyAV	CCTTC	4 cut(s)	14, 58, 226, 274
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	425
HpyF3I	CTNAG	2 cut(s)	33, 246
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	108, 121, 372
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	26, 53, 104, 125, 161
Lsp1109I	GCAGC	2 cut(s)	229, 423
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	98, 404
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	3 cut(s)	110, 123, 374
MboI	GATC	3 cut(s)	108, 121, 372
MboII	GAAGA	5 cut(s)	104, 152, 212, 368, 428
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	2 cut(s)	331, 419
MnlI	CCTC	4 cut(s)	65, 142, 241, 352
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	41, 149
MvaI	CCWGG	1 cut(s)	41
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	108, 121, 372
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	118
PfoI	TCCNGGA	2 cut(s)	39, 147
PkrI	GCNGC	2 cut(s)	244, 438
PshBI	ATTAAT	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	118
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	243, 437
Sau3AI	GATC	3 cut(s)	108, 121, 372
Sau96I	GGNCC	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	41, 149
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	8 cut(s)	25, 89, 103, 130, 255, 363, 385, 413
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	186
Sse9I	AATT	2 cut(s)	331, 419
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	2 cut(s)	98, 404
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	39, 147
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	331, 419
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	111, 123
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	2 cut(s)	242, 436
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	3 cut(s)	245, 369, 429
TspRI	CASTG	2 cut(s)	111, 123
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	186
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	2 cut(s)	331, 419
XspI	CTAG	2 cut(s)	98, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.