Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015499

Physical Location & Seq

Genomic Coordinates Reverse (-)

33042245 .. 33042514

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0207100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGTGAGTACGCCGGCGGGTCCATTAAGAGATGGTGGGACTGGGGCTGGACTTGGGTCCTCTCCAGAAAGCCCATCTTCGCTCAGGATCTGGAGATGAACGAGGAGGAGACCAAGATTCTCGGCTCAGACAACAGATGCAGCTGGCGACATGTCTTCTTCAAAGTCCGGTCCGAGCTCCAGAAGCTCGTGAGCTCCTACAACGTCACCACTCTTCCTCAAACTTACAAGCCCTACAACTCGTTGAACTACCCCAAGACGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009593 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0019722 GO:0019932 GO:0023052 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051606 GO:0051716 GO:0065007 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

89

Amino Acids

10.65

Weight (kDa)

9.48

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14640
fragaria_vesca	FvH4_2g22870
malus_domestica	MD03G1257100.v1.1 MD11G1277800.v1.1
prunus_persica	Prupe.8G234000_v2.0.a1
pyrus_communis	pycom03g20380 pycom11g24560
rosa_chinensis	RchiOBHm_Chr6g0289811
rosa_laevigata	RLG00000012266
rosa_roxburghii	Rroxscaffold_7G00177540 Rroxscaffold_7G00178060
rosa_rugosa	Rorug06G0207100
rosa_samantha	Rh6BG325800 Rh6CG331800 Rh6DG317100
rosa_wichuraiana	Rw6G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	163, 247
AluBI	AGCT	4 cut(s)	144, 178, 187, 195
AluI	AGCT	4 cut(s)	144, 178, 187, 195
Alw21I	GWGCWC	2 cut(s)	180, 197
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	96
AlwNI	CAGNNNCTG	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	141
AspS9I	GGNCC	3 cut(s)	21, 58, 171
AsuHPI	GGTGA	2 cut(s)	17, 199
AvaII	GGWCC	3 cut(s)	21, 58, 171
BanII	GRGCYC	2 cut(s)	180, 197
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	180, 197
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	27, 83
BcoDI	GTCTC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme18I	GGWCC	3 cut(s)	21, 58, 171
BmgT120I	GGNCC	3 cut(s)	21, 58, 171
BmiI	GGNNCC	2 cut(s)	22, 59
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	52
BoxI	GACNNNNGTC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	148
BpmI	CTGGAG	3 cut(s)	49, 113, 164
Bpu10I	CCTNAGC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	98, 141
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	119, 122
BseXI	GCAGC	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	180, 197
BsiSI	CCGG	2 cut(s)	15, 169
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	180, 197
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	18
BspCNI	CTCAG	2 cut(s)	97, 140
BspLI	GGNNCC	2 cut(s)	22, 59
BspPI	GGATC	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	14
BssMI	GATC	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	16, 146
BstDEI	CTNAG	2 cut(s)	84, 127
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	155
BstPAI	GACNNNNGTC	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	16, 146
CaiI	CAGNNNCTG	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	21, 58, 171
CpoI	CGGWCCG	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	10
CspI	CGGWCCG	1 cut(s)	171
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	8 cut(s)	48, 73, 126, 144, 178, 187, 195, 232
CviKI_1	RGCY	8 cut(s)	48, 73, 126, 144, 178, 187, 195, 232
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	84, 127
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	2 cut(s)	178, 195
Eco24I	GRGCYC	2 cut(s)	180, 197
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	3 cut(s)	21, 58, 171
Eco53kI	GAGCTC	2 cut(s)	178, 195
EcoICRI	GAGCTC	2 cut(s)	178, 195
EcoO109I	RGGNCCY	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	180, 197
FaeI	CATG	1 cut(s)	155
FaiI	YATR	1 cut(s)	153
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	151
FauI	CCCGC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	142
FriOI	GRGCYC	2 cut(s)	180, 197
Fsp4HI	GCNGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	142
GsuI	CTGGAG	3 cut(s)	49, 113, 164
HapII	CCGG	2 cut(s)	15, 169
Hin1II	CATG	1 cut(s)	155
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	15, 169
HphI	GGTGA	2 cut(s)	17, 199
Hpy188I	TCNGA	2 cut(s)	130, 175
Hpy188III	TCNNGA	5 cut(s)	66, 86, 92, 181, 190
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	2 cut(s)	84, 127
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	155
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	183, 200
LpnPI	CCDG	9 cut(s)	28, 28, 34, 71, 77, 79, 130, 182, 194
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	128
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	4 cut(s)	70, 148, 151, 206
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	2 cut(s)	180, 197
MnlI	CCTC	4 cut(s)	71, 97, 100, 228
MreI	CGCCGGCG	1 cut(s)	14
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	2 cut(s)	15, 169
MwoI	GCNNNNNNNGC	1 cut(s)	184
NaeI	GCCGGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	88
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	22, 59
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	155
PciI	ACATGT	1 cut(s)	151
PdiI	GCCGGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	58
PscI	ACATGT	1 cut(s)	151
PshAI	GACNNNNGTC	1 cut(s)	56
Psp124BI	GAGCTC	2 cut(s)	180, 197
Psp5II	RGGWCCY	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	22, 59
PspPI	GGNCC	3 cut(s)	21, 58, 171
PspPPI	RGGWCCY	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
Rsr2I	CGGWCCG	1 cut(s)	171
RsrII	CGGWCCG	1 cut(s)	171
SacI	GAGCTC	2 cut(s)	180, 197
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	21, 58, 171
SduI	GDGCHC	2 cut(s)	180, 197
SetI	ASST	5 cut(s)	146, 180, 189, 197, 207
SfaNI	GCATC	1 cut(s)	128
SgrAI	CRCCGGYG	1 cut(s)	14
SinI	GGWCC	3 cut(s)	21, 58, 171
SsiI	CCGC	1 cut(s)	18
SstI	GAGCTC	2 cut(s)	180, 197
TaiI	ACGT	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	113
VpaK11BI	GGWCC	3 cut(s)	21, 58, 171
XceI	RCATGY	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.