Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016691

Physical Location & Seq

Genomic Coordinates Reverse (-)

9329620 .. 9331646

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16563.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGAAAACTTGTTTGATCTTCTTCCTCTACACAACAATTCTCCAATACTATTTCCACTTCTCTGTGTCATCATTATCAACACCTCTTCTCCTCCATCTCTCCCACTCTCTCTCAACCTCAAAACACTCTTCATCTCCTCTCCACCTTCTCAAATCATCCTCCTCCCGTTCCTCCGCCCGCTTCCGCCGCCACCACCACAAACAACAACAACAACAACTTTCACTCCCTATCTCCTCCGGCAGCGATTATCTCATCTCCCTCTCCGTCGGCTCCTCCTCCTCAGCCGTCTCCTTGTACTTGGACACCGGAAGCGACCTCGTTTGGTTCCCTTGCCGTCCTTTCACTTGCATCCTCTGTGAATCCAAACCACTCCCTCCTTCTCCTCCTTCATCTCTCTCCTCCTCCGCCACCACCGTCTCCTGCTCCTCCCCTTCTTGCTCCGCCGCTCACTCTTCCCTTCCCTCCTCCGACCTCTGCGCTATCTCCAACTGTCCTCTTGATTTCATCGAAACCGGAGATTGCAACACTTCTTCTTACCCTTGTCCTCCTTTCTACTACGCTTACGGTGACGGCTCTCTCGTCGCAAAACTCTACTCCGACTCACTCTCTCTCCCTTCCGTCTCCGTCTCTAACTTCACCTTCGGCTGCGCTCACACCACTCTCGCTGAACCTATCGGCGTCGCTGGATTCGGCCGTGGACGTCTCTCTCTTCCCGCTCAGCTCGCTGTTCACTCTCCTCATCTCGGTAATAGCTTCTCTTATTGTCTCGTCTCTCACTCTTTTGACTCGGACCGAGTCCGCCGTCCGAGTCCGCTCATCCTCGGTCGCTTCGTCGATAAAAAAGAGAAACGTGTCGGAACCACCGATGATCATGATGACGGTGATGATGAGAAGAAGAAGAAAAATGAGTTCGTCTTCACAGAGATGCTTGAAAACCCAAAGCATCCCTACTTCTACTCTGTTTCACTCCAAGGAATCTCAATCGGAAAACGGAATATTCCAGCTCCGGCGATGCTCAGAAGAATTGACAAAAACGGTGGCGGAGGAGTTGTTGTTGACTCAGGGACAACGTTCACGATGCTTCCGGCGAAATTCTACAATTCGGTGGTTGAAGAATTCGATAGTCGGGTCGGGCGGGTTCACGAACGGGCTGATCGGGTCGAACCGAGTTCGGGTATGAGTCCTTGTTACTATTTAAACCAGACGGTTAAAGTTCCAGCTCTGGTTTTGCATTTTGCCGGGAACAGATCCAGTGTGACGCTCCCCAGGAGAAATTATTTTTACGAATTTATGGACGGTGGAGATGGTAAAGAAGAGAAGAGGAAAATTGGATGTTTGATGTTGATGAACGGTGGAGATGAATCAGAACTTCGAGGTGGTACTGGGGCTATTCTGGGGAATTACCAGCAACAAGGGTTTGAGGTGGTTTATGATCTGTTGAACAGAAGAGTTGGGTTTGCTAAGAGGAAGTGCGCATCTTTATGGGATTCGCTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009505 GO:0016787 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044238 GO:0044464 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

499

Amino Acids

54.75

Weight (kDa)

8.61

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	83 - 274	1.1e-30	Xylanase inhibitor N-terminal
Asp	PF00026	296 - 488	1.8e-06	Eukaryotic aspartyl protease
TAXi_C	PF14541	319 - 488	1.1e-29	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16563
fragaria_vesca	FvH4_5g18770
malus_domestica	MD06G1060000.v1.1
prunus_persica	Prupe.5G070800_v2.0.a1
pyrus_communis	pycom06g04960
rosa_chinensis	RchiOBHm_Chr7g0203111
rosa_laevigata	RLG00000003550
rosa_roxburghii	Rroxscaffold_3G00254060
rosa_rugosa	Rorug07G0074700
rosa_samantha	Rh7AG203500 Rh7BG203100 Rh7CG214300 Rh7DG210200
rosa_wichuraiana	Rw7G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	703
Acc16I	TGCGCA	1 cut(s)	1474
AccBSI	CCGCTC	3 cut(s)	446, 716, 814
AclI	AACGTT	1 cut(s)	1070
AclWI	GGATC	1 cut(s)	1242
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	3 cut(s)	1091, 1115, 1286
AcyI	GRCGYC	2 cut(s)	678, 700
AfaI	GTAC	2 cut(s)	296, 1381
AfiI	CCNNNNNNNGG	2 cut(s)	743, 1172
AflIII	ACRYGT	1 cut(s)	850
AgsI	TTSAA	3 cut(s)	932, 1112, 1441
AjnI	CCWGG	1 cut(s)	1265
AluBI	AGCT	4 cut(s)	721, 753, 1004, 1220
AluI	AGCT	4 cut(s)	721, 753, 1004, 1220
Alw26I	GTCTC	7 cut(s)	292, 421, 625, 631, 707, 770, 775
AlwI	GGATC	1 cut(s)	1242
AoxI	GGCC	1 cut(s)	691
ApeKI	GCWGC	2 cut(s)	240, 645
ApoI	RAATTY	3 cut(s)	1091, 1115, 1286
AspLEI	GCGC	3 cut(s)	479, 650, 1475
AspS9I	GGNCC	1 cut(s)	790
AsuC2I	CCSGG	1 cut(s)	1240
AsuHPI	GGTGA	3 cut(s)	578, 628, 893
AvaII	GGWCC	1 cut(s)	790
BbsI	GAAGAC	1 cut(s)	907
BbvCI	CCTCAGC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	252, 632
BccI	CCATC	2 cut(s)	102, 1298
BceAI	ACGGC	5 cut(s)	269, 318, 586, 678, 786
BciT130I	CCWGG	1 cut(s)	1267
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	1240
BcoDI	GTCTC	7 cut(s)	292, 421, 625, 631, 707, 770, 775
BisI	GCNGC	4 cut(s)	187, 241, 444, 646
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	4 cut(s)	188, 242, 445, 647
Bme1390I	CCNGG	2 cut(s)	1240, 1267
Bme18I	GGWCC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	790
BmiI	GGNNCC	3 cut(s)	271, 326, 859
BmrFI	CCNGG	2 cut(s)	1240, 1267
BmrI	ACTGGG	1 cut(s)	1392
BmsI	GCATC	6 cut(s)	357, 915, 952, 1002, 1068, 1484
BmuI	ACTGGG	1 cut(s)	1392
BpiI	GAAGAC	1 cut(s)	907
Bpu10I	CCTNAGC	1 cut(s)	280
Bpu1102I	GCTNAGC	1 cut(s)	717
BpuMI	CCSGG	1 cut(s)	1240
BsaHI	GRCGYC	2 cut(s)	678, 700
BsaJI	CCNNGG	4 cut(s)	694, 820, 970, 1265
BsaWI	WCCGGW	2 cut(s)	305, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	743, 1172
Bse1I	ACTGG	2 cut(s)	1251, 1387
BseBI	CCWGG	1 cut(s)	1267
BseDI	CCNNGG	4 cut(s)	694, 820, 970, 1265
BseGI	GGATG	5 cut(s)	155, 348, 816, 943, 1337
BseLI	CCNNNNNNNGG	2 cut(s)	743, 1172
BseMII	CTCAG	4 cut(s)	294, 731, 1030, 1074
BseNI	ACTGG	2 cut(s)	1251, 1387
BseX3I	CGGCCG	1 cut(s)	691
BseXI	GCAGC	2 cut(s)	252, 632
Bsh1285I	CGRYCG	2 cut(s)	694, 826
BshFI	GGCC	1 cut(s)	693
BsiEI	CGRYCG	2 cut(s)	694, 826
BsiSI	CCGG	6 cut(s)	237, 306, 513, 1007, 1085, 1239
BslFI	GGGAC	1 cut(s)	1078
BslI	CCNNNNNNNGG	2 cut(s)	743, 1172
BsmAI	GTCTC	7 cut(s)	292, 421, 625, 631, 707, 770, 775
BsmBI	CGTCTC	6 cut(s)	292, 421, 625, 631, 707, 775
BsmFI	GGGAC	1 cut(s)	1078
BsnI	GGCC	1 cut(s)	693
Bsp143I	GATC	5 cut(s)	15, 868, 1153, 1247, 1432
Bsp1720I	GCTNAGC	1 cut(s)	717
BspANI	GGCC	1 cut(s)	693
BspCNI	CTCAG	4 cut(s)	293, 730, 1029, 1073
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	3 cut(s)	271, 326, 859
BspPI	GGATC	1 cut(s)	1242
BsrBI	CCGCTC	3 cut(s)	446, 716, 814
BsrI	ACTGG	2 cut(s)	1251, 1387
BssECI	CCNNGG	4 cut(s)	694, 820, 970, 1265
BssMI	GATC	5 cut(s)	15, 868, 1153, 1247, 1432
BssNI	GRCGYC	2 cut(s)	678, 700
BssT1I	CCWWGG	1 cut(s)	970
Bst2UI	CCWGG	1 cut(s)	1267
Bst4CI	ACNGT	8 cut(s)	415, 491, 566, 881, 1037, 1207, 1298, 1352
Bst6I	CTCTTC	7 cut(s)	90, 133, 457, 714, 1308, 1313, 1441
BstACI	GRCGYC	2 cut(s)	678, 700
BstC8I	GCNNGC	2 cut(s)	178, 723
BstDEI	CTNAG	5 cut(s)	280, 717, 1016, 1060, 1461
BstDSI	CCRYGG	1 cut(s)	694
BstF5I	GGATG	5 cut(s)	155, 348, 816, 943, 1337
BstHHI	GCGC	3 cut(s)	479, 650, 1475
BstKTI	GATC	5 cut(s)	18, 871, 1156, 1250, 1435
BstMAI	GTCTC	7 cut(s)	292, 421, 625, 631, 707, 770, 775
BstMBI	GATC	5 cut(s)	15, 868, 1153, 1247, 1432
BstMCI	CGRYCG	2 cut(s)	694, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 722
BstNI	CCWGG	1 cut(s)	1267
BstSCI	CCNGG	2 cut(s)	1238, 1265
BstV1I	GCAGC	2 cut(s)	252, 632
BstV2I	GAAGAC	1 cut(s)	907
BstX2I	RGATCY	1 cut(s)	1247
BstYI	RGATCY	1 cut(s)	1247
BstZI	CGGCCG	1 cut(s)	691
BsuRI	GGCC	1 cut(s)	693
BtgI	CCRYGG	1 cut(s)	694
BtgZI	GCGATG	1 cut(s)	1025
BtsCI	GGATG	5 cut(s)	155, 348, 816, 943, 1337
BtsIMutI	CAGTG	1 cut(s)	1258
Cac8I	GCNNGC	2 cut(s)	178, 723
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	3 cut(s)	479, 650, 1475
Cfr13I	GGNCC	1 cut(s)	790
CpoI	CGGWCCG	1 cut(s)	790
CseI	GACGC	2 cut(s)	667, 1267
Csp6I	GTAC	2 cut(s)	295, 1380
CspCI	CAANNNNNGTGG	2 cut(s)	1018, 1053
CspI	CGGWCCG	1 cut(s)	790
CviAII	CATG	1 cut(s)	872
CviQI	GTAC	2 cut(s)	295, 1380
DdeI	CTNAG	5 cut(s)	280, 717, 1016, 1060, 1461
DpnI	GATC	5 cut(s)	17, 870, 1155, 1249, 1434
DpnII	GATC	5 cut(s)	15, 868, 1153, 1247, 1432
DraI	TTTAAA	1 cut(s)	1197
EaeI	YGGCCR	1 cut(s)	691
EagI	CGGCCG	1 cut(s)	691
Eam1104I	CTCTTC	7 cut(s)	90, 133, 457, 714, 1308, 1313, 1441
EarI	CTCTTC	7 cut(s)	90, 133, 457, 714, 1308, 1313, 1441
EciI	GGCGGA	6 cut(s)	163, 173, 394, 430, 788, 1056
EclXI	CGGCCG	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	970
Eco47I	GGWCC	1 cut(s)	790
Eco52I	CGGCCG	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	1115
EcoRII	CCWGG	1 cut(s)	1265
EcoT14I	CCWWGG	1 cut(s)	970
ErhI	CCWWGG	1 cut(s)	970
Esp3I	CGTCTC	6 cut(s)	292, 421, 625, 631, 707, 775
FaeI	CATG	1 cut(s)	875
FaiI	YATR	5 cut(s)	873, 1178, 1292, 1431, 1483
FaqI	GGGAC	1 cut(s)	1078
FatI	CATG	1 cut(s)	871
FauI	CCCGC	3 cut(s)	185, 721, 1128
FbaI	TGATCA	1 cut(s)	868
Fnu4HI	GCNGC	4 cut(s)	187, 241, 444, 646
FokI	GGATG	5 cut(s)	142, 335, 803, 930, 1344
Fsp4HI	GCNGC	4 cut(s)	187, 241, 444, 646
FspAI	RTGCGCAY	1 cut(s)	1474
FspI	TGCGCA	1 cut(s)	1474
GlaI	GCGC	3 cut(s)	478, 649, 1474
GluI	GCNGC	4 cut(s)	187, 241, 444, 646
HaeIII	GGCC	1 cut(s)	693
HapII	CCGG	6 cut(s)	237, 306, 513, 1007, 1085, 1239
HgaI	GACGC	2 cut(s)	667, 1267
HhaI	GCGC	3 cut(s)	479, 650, 1475
Hin1I	GRCGYC	2 cut(s)	678, 700
Hin1II	CATG	1 cut(s)	875
Hin6I	GCGC	3 cut(s)	477, 648, 1473
HinP1I	GCGC	3 cut(s)	477, 648, 1473
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HpaII	CCGG	6 cut(s)	237, 306, 513, 1007, 1085, 1239
HphI	GGTGA	3 cut(s)	578, 628, 893
Hpy166II	GTNNAC	5 cut(s)	698, 730, 1057, 1074, 1141
Hpy188I	TCNGA	8 cut(s)	469, 598, 790, 807, 857, 986, 1019, 1366
Hpy188III	TCNNGA	4 cut(s)	497, 872, 1075, 1142
Hpy8I	GTNNAC	5 cut(s)	698, 730, 1057, 1074, 1141
Hpy99I	CGWCG	4 cut(s)	269, 584, 683, 836
HpyAV	CCTTC	7 cut(s)	155, 387, 396, 441, 467, 624, 649
HpyCH4III	ACNGT	8 cut(s)	415, 491, 566, 881, 1037, 1207, 1298, 1352
HpyCH4IV	ACGT	3 cut(s)	700, 850, 1070
HpyCH4V	TGCA	3 cut(s)	348, 522, 1231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 722
HpyF3I	CTNAG	5 cut(s)	280, 717, 1016, 1060, 1461
HpySE526I	ACGT	3 cut(s)	700, 850, 1070
Hsp92I	GRCGYC	2 cut(s)	678, 700
Hsp92II	CATG	1 cut(s)	875
HspAI	GCGC	3 cut(s)	477, 648, 1473
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	5 cut(s)	15, 868, 1153, 1247, 1432
LmnI	GCTCC	5 cut(s)	275, 428, 443, 1009, 1266
Lsp1109I	GCAGC	2 cut(s)	252, 632
LweI	GCATC	6 cut(s)	357, 915, 952, 1002, 1068, 1484
MaeII	ACGT	3 cut(s)	700, 850, 1070
MaeIII	GTNAC	3 cut(s)	566, 1187, 1255
MalI	GATC	5 cut(s)	17, 870, 1155, 1249, 1434
MbiI	CCGCTC	3 cut(s)	446, 716, 814
MboI	GATC	5 cut(s)	15, 868, 1153, 1247, 1432
MflI	RGATCY	1 cut(s)	1247
MluCI	AATT	9 cut(s)	36, 1023, 1091, 1099, 1115, 1273, 1286, 1326, 1399
MlyI	GAGTC	6 cut(s)	593, 779, 804, 817, 1052, 1189
MmeI	TCCRAC	4 cut(s)	492, 510, 621, 835
MseI	TTAA	3 cut(s)	1196, 1209, 1494
MslI	CAYNNNNRTG	2 cut(s)	923, 1480
MspI	CCGG	6 cut(s)	237, 306, 513, 1007, 1085, 1239
MspR9I	CCNGG	2 cut(s)	1240, 1267
MvaI	CCWGG	1 cut(s)	1267
MwoI	GCNNNNNNNGC	2 cut(s)	186, 722
NciI	CCSGG	1 cut(s)	1240
NdeII	GATC	5 cut(s)	15, 868, 1153, 1247, 1432
NlaIII	CATG	1 cut(s)	875
NlaIV	GGNNCC	3 cut(s)	271, 326, 859
NmuCI	GTSAC	2 cut(s)	566, 1255
NsbI	TGCGCA	1 cut(s)	1474
PagI	TCATGA	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	3 cut(s)	576, 828, 861
PfeI	GAWTC	5 cut(s)	359, 687, 975, 1361, 1487
PflFI	GACNNNGTC	1 cut(s)	794
PkrI	GCNGC	4 cut(s)	188, 242, 445, 647
PleI	GAGTC	6 cut(s)	593, 779, 803, 816, 1052, 1188
PpsI	GAGTC	6 cut(s)	593, 779, 803, 816, 1052, 1188
Psp1406I	AACGTT	1 cut(s)	1070
Psp6I	CCWGG	1 cut(s)	1265
PspGI	CCWGG	1 cut(s)	1265
PspN4I	GGNNCC	3 cut(s)	271, 326, 859
PspPI	GGNCC	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	1247
PsyI	GACNNNGTC	1 cut(s)	794
RsaI	GTAC	2 cut(s)	296, 1381
RsaNI	GTAC	2 cut(s)	295, 1380
RseI	CAYNNNNRTG	2 cut(s)	923, 1480
Rsr2I	CGGWCCG	1 cut(s)	790
RsrII	CGGWCCG	1 cut(s)	790
SaqAI	TTAA	3 cut(s)	1196, 1209, 1494
SatI	GCNGC	4 cut(s)	187, 241, 444, 646
Sau3AI	GATC	5 cut(s)	15, 868, 1153, 1247, 1432
Sau96I	GGNCC	1 cut(s)	790
SchI	GAGTC	6 cut(s)	593, 779, 804, 817, 1052, 1189
ScrFI	CCNGG	2 cut(s)	1240, 1267
SfaNI	GCATC	6 cut(s)	357, 915, 952, 1002, 1068, 1484
SinI	GGWCC	1 cut(s)	790
SmiMI	CAYNNNNRTG	2 cut(s)	923, 1480
Sse9I	AATT	9 cut(s)	36, 1023, 1091, 1099, 1115, 1273, 1286, 1326, 1399
SspI	AATATT	1 cut(s)	997
StyD4I	CCNGG	2 cut(s)	1238, 1265
StyI	CCWWGG	1 cut(s)	970
TaaI	ACNGT	8 cut(s)	415, 491, 566, 881, 1037, 1207, 1298, 1352
TaiI	ACGT	3 cut(s)	703, 853, 1073
TaqI	TCGA	5 cut(s)	507, 834, 1119, 1161, 1372
TaqII	GACCGA	2 cut(s)	807, 812
TasI	AATT	9 cut(s)	36, 1023, 1091, 1099, 1115, 1273, 1286, 1326, 1399
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	2 cut(s)	189, 446
TfiI	GAWTC	5 cut(s)	359, 687, 975, 1361, 1487
Tru1I	TTAA	3 cut(s)	1196, 1209, 1494
Tru9I	TTAA	3 cut(s)	1196, 1209, 1494
TscAI	CASTG	1 cut(s)	1258
TseFI	GTSAC	2 cut(s)	566, 1255
TseI	GCWGC	2 cut(s)	240, 645
Tsp45I	GTSAC	2 cut(s)	566, 1255
TspDTI	ATGAA	6 cut(s)	17, 120, 378, 493, 1361, 1374
TspGWI	ACGGA	4 cut(s)	253, 607, 613, 1006
TspRI	CASTG	1 cut(s)	1258
Tth111I	GACNNNGTC	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	790
XapI	RAATTY	3 cut(s)	1091, 1115, 1286
ZraI	GACGTC	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.