RLG00000003550

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
49932875 .. 49934329
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003550

Sequence Viewer

Length: 1455 bp
ATGGCATCTCCTACTCCTCTGTTTCTAGTACTCTGTTTCACTCACTTCTCTGTCTCATTTTCCCAAACACTCTTTCTCCCCCTAACCCACTCCCTCTCCCAAACCAAATTCAACACCACCCACCACCTCCTCAAAGCCACCGCCACGCGCTCCGCCACCCGCTTCCACCGCCACCAACACCACCGCAAAACCAACCAAGTCTCTCTACCACTCGCTCCGGGAAGCGACTACACTCTCTCCTTCTCTCTCGGCTCCACCCCTCCCCAGCCCATCTCCCTCTACATGGACACCGGCAGCGACCTCGTCTGGTTCCCCTGCTCTCCCTTCGAGTGCATTCTCTGCGAAGGCAAGCCCAACTCCTCCTTCCCCCCGCCCAAAATCCCCAAAAACGCCGCCGTTTCCTGCGACTCCAACTCCTGCTCCGCCGCGCACTCCGCCCTTAGTTCCCGCTCTCTCTGCGCCATAGCCAACTGTCCTCTCGAGTCCATTGAGCTATCCGAGTGCTCCTCTTTCAAATGCCCGCCGTTTTATTATGCCTACGGCGACGGAAGCTTGATCTCCAAGCTTTTCAGATACAGCTTATCAATTCCCATGTCAACTCCGTCGCTGATTCTTCCGAACTTCACTTTCGGGTGTTCCCATTCTGCCCTCGGCGAGCCTATTGGGGTTGCCGGCTTCGGCCGGGGACTGCTTTCTCTCCCGGCCCAGCTCGCCAAGTCCTCTCCCCAGCTCGGTAATCAGTTCTCTTACTGTTTGGTTTCTCACTCCTTTGACCAGGACCGAGTTCGGAAACCGAGTCCGCTCATTCTCGGCCGCTACGATCAGAAATCGGTTTATGGAGCTGATGAGTATATCTACACCTCCATGCTTTACAACCCGAAGCACCCCTATTTCTACTGTGTTGGTTTGGCCGGAATATCTGTCGGGAAAAGGGTTGTTCCGGCTCCGGAGTTTCTCAAAAGGGTCGATGAGAAAGGGAACGGTGGAGTCGTGGTGGACTCCGGGACGACGTTCACTATGTTGCCGCAGCGGTTCTATAACTCGTTGGTAGCCGAGTTCGACCGCCGAGTCGGACGAGTTCACAAGCGGGCGACTAAGGTTGAGGACGCAACCGGGCTCGGGCCGTGTTACTACTACGACGGCGTTATGGAAGTTCCCGTCGTGACTTTGCATTTTGTGGGGAACAAATCCAGTGTGGTGCTGCCTAGAAAGAACTATTTTTACGAGTTTACGGACGGTGGCGATGGGGTGGGGAGGAAGCGGAAAGTGGGGTGTTGGATGTTGATGAACGGCGGCGATGAGAAGGACTCGGGCGGTGGGCCCGGGGCCATTTTCGGGAATTACCAGCAGCAAGGGTTTGAGGTGGTTTATGATTTGGAGAAGCACAGGGTTGGATTTGCAAAGAGGCAGTGTTCATTGCTTTGGGACAATCTCAACCAGAGGTGGGGGGGTTGA

Protein Analysis

485

Amino Acids

53.28

Weight (kDa)

8.87

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 77 - 270 8e-28 Xylanase inhibitor N-terminal
Asp PF00026 77 - 468 2.2e-08 Eukaryotic aspartyl protease
TAXi_C PF14541 299 - 468 3.4e-28 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16563
fragaria_vesca FvH4_5g18770
malus_domestica MD06G1060000.v1.1
prunus_persica Prupe.5G070800_v2.0.a1
pyrus_communis pycom06g04960
rosa_chinensis RchiOBHm_Chr7g0203111
rosa_laevigata RLG00000003550
rosa_roxburghii Rroxscaffold_3G00254060
rosa_rugosa Rorug07G0074700
rosa_samantha Rh7AG203500 Rh7BG203100 Rh7CG214300 Rh7DG210200
rosa_wichuraiana Rw7G017760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1067
AccBSI CCGCTC 2 cut(s) 450, 802
AccII CGCG 2 cut(s) 148, 428
AccIII TCCGGA 1 cut(s) 946
AcoI YGGCCR 3 cut(s) 679, 811, 909
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 5 cut(s) 283, 731, 1119, 1335, 1444
AgsI TTSAA 2 cut(s) 112, 514
AjnI CCWGG 1 cut(s) 774
AjuI GAANNNNNNNTTGG 4 cut(s) 57, 89, 347, 379
AluBI AGCT 7 cut(s) 493, 552, 565, 579, 709, 730, 842
AluI AGCT 7 cut(s) 493, 552, 565, 579, 709, 730, 842
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 2 cut(s) 58, 205
Ama87I CYCGRG 4 cut(s) 479, 1118, 1309, 1322
Aor13HI TCCGGA 1 cut(s) 946
AoxI GGCC 7 cut(s) 679, 702, 811, 909, 1121, 1319, 1326
ApaI GGGCCC 1 cut(s) 1323
ApeKI GCWGC 4 cut(s) 294, 1027, 1201, 1348
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 3 cut(s) 150, 430, 461
AspS9I GGNCC 6 cut(s) 703, 778, 1121, 1319, 1320, 1326
AsuC2I CCSGG 7 cut(s) 219, 683, 701, 1003, 1114, 1323, 1324
AvaI CYCGRG 4 cut(s) 479, 1118, 1309, 1322
AvaII GGWCC 1 cut(s) 778
BaeGI GKGCMC 1 cut(s) 1323
BanII GRGCYC 2 cut(s) 1119, 1323
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 4 cut(s) 306, 1039, 1188, 1360
BccI CCATC 2 cut(s) 278, 1238
BceAI ACGGC 6 cut(s) 380, 508, 556, 1108, 1156, 1306
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 1 cut(s) 776
BcnI CCSGG 7 cut(s) 219, 683, 701, 1003, 1114, 1323, 1324
BcoDI GTCTC 2 cut(s) 58, 205
BfaI CTAG 2 cut(s) 26, 1206
BisI GCNGC 9 cut(s) 295, 393, 426, 814, 1025, 1028, 1202, 1294, 1349
BlsI GCNGC 9 cut(s) 296, 394, 427, 815, 1026, 1029, 1203, 1295, 1350
BmcAI AGTACT 1 cut(s) 30
Bme1390I CCNGG 8 cut(s) 219, 683, 701, 776, 1003, 1114, 1323, 1324
Bme18I GGWCC 1 cut(s) 778
BmeT110I CYCGRG 4 cut(s) 479, 1118, 1309, 1322
BmgT120I GGNCC 6 cut(s) 703, 778, 1121, 1319, 1320, 1326
BmiI GGNNCC 5 cut(s) 253, 311, 945, 1321, 1327
BmrFI CCNGG 8 cut(s) 219, 683, 701, 776, 1003, 1114, 1323, 1324
BmsI GCATC 1 cut(s) 14
BplI GAGNNNNNCTC 4 cut(s) 491, 523, 1292, 1324
BpuMI CCSGG 7 cut(s) 219, 683, 701, 1003, 1114, 1323, 1324
BsaJI CCNNGG 4 cut(s) 649, 682, 1322, 1323
BsaWI WCCGGW 1 cut(s) 946
Bsc4I CCNNNNNNNGG 5 cut(s) 283, 731, 1119, 1335, 1444
Bse118I RCCGGY 2 cut(s) 290, 671
Bse1I ACTGG 1 cut(s) 1191
Bse3DI GCAATG 1 cut(s) 1415
BseAI TCCGGA 1 cut(s) 946
BseBI CCWGG 1 cut(s) 776
BseDI CCNNGG 4 cut(s) 649, 682, 1322, 1323
BseGI GGATG 1 cut(s) 1284
BseLI CCNNNNNNNGG 5 cut(s) 283, 731, 1119, 1335, 1444
BseMI GCAATG 1 cut(s) 1415
BseNI ACTGG 1 cut(s) 1191
BseRI GAGGAG 4 cut(s) 6, 119, 349, 496
BseSI GKGCMC 1 cut(s) 1323
BseX3I CGGCCG 2 cut(s) 679, 811
BseXI GCAGC 4 cut(s) 306, 1039, 1188, 1360
BseYI CCCAGC 3 cut(s) 264, 705, 726
Bsh1236I CGCG 2 cut(s) 148, 428
Bsh1285I CGRYCG 3 cut(s) 682, 814, 1063
BshFI GGCC 7 cut(s) 681, 704, 813, 911, 1123, 1321, 1328
BsiEI CGRYCG 3 cut(s) 682, 814, 1063
BsiHKAI GWGCWC 1 cut(s) 506
BsiHKCI CYCGRG 4 cut(s) 479, 1118, 1309, 1322
BslFI GGGAC 3 cut(s) 699, 1018, 1439
BslI CCNNNNNNNGG 5 cut(s) 283, 731, 1119, 1335, 1444
BsmAI GTCTC 2 cut(s) 58, 205
BsmFI GGGAC 3 cut(s) 699, 1018, 1439
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 7 cut(s) 681, 704, 813, 911, 1123, 1321, 1328
BsoBI CYCGRG 4 cut(s) 479, 1118, 1309, 1322
Bsp120I GGGCCC 1 cut(s) 1319
Bsp1286I GDGCHC 3 cut(s) 506, 1119, 1323
Bsp13I TCCGGA 1 cut(s) 946
Bsp143I GATC 2 cut(s) 555, 820
BspANI GGCC 7 cut(s) 681, 704, 813, 911, 1123, 1321, 1328
BspEI TCCGGA 1 cut(s) 946
BspFNI CGCG 2 cut(s) 148, 428
BspLI GGNNCC 5 cut(s) 253, 311, 945, 1321, 1327
BsrBI CCGCTC 2 cut(s) 450, 802
BsrDI GCAATG 1 cut(s) 1415
BsrFI RCCGGY 2 cut(s) 290, 671
BsrI ACTGG 1 cut(s) 1191
BssAI RCCGGY 2 cut(s) 290, 671
BssECI CCNNGG 4 cut(s) 649, 682, 1322, 1323
BssMI GATC 2 cut(s) 555, 820
Bst2UI CCWGG 1 cut(s) 776
Bst4CI ACNGT 5 cut(s) 473, 752, 899, 983, 1238
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 6 cut(s) 350, 521, 656, 673, 711, 1089
BstDEI CTNAG 2 cut(s) 440, 1095
BstF5I GGATG 1 cut(s) 1284
BstFNI CGCG 2 cut(s) 148, 428
BstHHI GCGC 3 cut(s) 150, 430, 461
BstKTI GATC 2 cut(s) 558, 823
BstMAI GTCTC 2 cut(s) 58, 205
BstMBI GATC 2 cut(s) 555, 820
BstMCI CGRYCG 3 cut(s) 682, 814, 1063
BstMWI GCNNNNNNNGC 6 cut(s) 168, 339, 434, 456, 549, 710
BstNI CCWGG 1 cut(s) 776
BstSCI CCNGG 8 cut(s) 217, 681, 699, 774, 1001, 1112, 1321, 1322
BstSLI GKGCMC 1 cut(s) 1323
BstUI CGCG 2 cut(s) 148, 428
BstV1I GCAGC 4 cut(s) 306, 1039, 1188, 1360
BstZI CGGCCG 2 cut(s) 679, 811
BsuRI GGCC 7 cut(s) 681, 704, 813, 911, 1123, 1321, 1328
BtgZI GCGATG 2 cut(s) 1257, 1311
BtsCI GGATG 1 cut(s) 1284
BtsI GCAGTG 1 cut(s) 1415
BtsIMutI CAGTG 2 cut(s) 1198, 1415
Cac8I GCNNGC 6 cut(s) 350, 521, 656, 673, 711, 1089
CfoI GCGC 3 cut(s) 150, 430, 461
Cfr10I RCCGGY 2 cut(s) 290, 671
Cfr13I GGNCC 6 cut(s) 703, 778, 1121, 1319, 1320, 1326
Cfr9I CCCGGG 1 cut(s) 1322
CseI GACGC 1 cut(s) 1115
Csp6I GTAC 1 cut(s) 29
CviAII CATG 3 cut(s) 283, 592, 865
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 440, 1095
DpnI GATC 2 cut(s) 557, 822
DpnII GATC 2 cut(s) 555, 820
DrdI GACNNNNNNGTC 1 cut(s) 1067
DseDI GACNNNNNNGTC 1 cut(s) 1067
EaeI YGGCCR 3 cut(s) 679, 811, 909
EagI CGGCCG 2 cut(s) 679, 811
EciI GGCGGA 3 cut(s) 142, 412, 424
EclXI CGGCCG 2 cut(s) 679, 811
Eco24I GRGCYC 2 cut(s) 1119, 1323
Eco47I GGWCC 1 cut(s) 778
Eco52I CGGCCG 2 cut(s) 679, 811
Eco88I CYCGRG 4 cut(s) 479, 1118, 1309, 1322
EcoRII CCWGG 1 cut(s) 774
EcoT38I GRGCYC 2 cut(s) 1119, 1323
FaeI CATG 3 cut(s) 286, 595, 868
FaqI GGGAC 3 cut(s) 699, 1018, 1439
FatI CATG 3 cut(s) 282, 591, 864
FauI CCCGC 5 cut(s) 167, 378, 455, 528, 1080
Fnu4HI GCNGC 9 cut(s) 295, 393, 426, 814, 1025, 1028, 1202, 1294, 1349
FokI GGATG 1 cut(s) 1291
FriOI GRGCYC 2 cut(s) 1119, 1323
Fsp4HI GCNGC 9 cut(s) 295, 393, 426, 814, 1025, 1028, 1202, 1294, 1349
FspBI CTAG 2 cut(s) 26, 1206
GlaI GCGC 3 cut(s) 149, 429, 460
GluI GCNGC 9 cut(s) 295, 393, 426, 814, 1025, 1028, 1202, 1294, 1349
GsaI CCCAGC 3 cut(s) 268, 709, 730
HaeIII GGCC 7 cut(s) 681, 704, 813, 911, 1123, 1321, 1328
HgaI GACGC 1 cut(s) 1115
HhaI GCGC 3 cut(s) 150, 430, 461
Hin1II CATG 3 cut(s) 286, 595, 868
Hin6I GCGC 3 cut(s) 148, 428, 459
HinP1I GCGC 3 cut(s) 148, 428, 459
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 2 cut(s) 550, 563
HinfI GANTC 8 cut(s) 407, 482, 610, 796, 987, 998, 1068, 1307
Hpy166II GTNNAC 5 cut(s) 597, 997, 1014, 1081, 1230
Hpy188I TCNGA 6 cut(s) 499, 572, 618, 789, 825, 1073
Hpy188III TCNNGA 5 cut(s) 479, 925, 947, 1162, 1336
Hpy8I GTNNAC 5 cut(s) 597, 997, 1014, 1081, 1230
Hpy99I CGWCG 5 cut(s) 548, 607, 1012, 1142, 1163
HpyAV CCTTC 5 cut(s) 250, 334, 338, 373, 1297
HpyCH4III ACNGT 5 cut(s) 473, 752, 899, 983, 1238
HpyCH4IV ACGT 1 cut(s) 1010
HpyCH4V TGCA 3 cut(s) 333, 1171, 1400
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 339, 434, 456, 549, 710
HpyF3I CTNAG 2 cut(s) 440, 1095
HpySE526I ACGT 1 cut(s) 1010
Hsp92II CATG 3 cut(s) 286, 595, 868
HspAI GCGC 3 cut(s) 148, 428, 459
Kpn2I TCCGGA 1 cut(s) 946
KroI GCCGGC 1 cut(s) 671
KroNI GCCGGC 1 cut(s) 673
Kzo9I GATC 2 cut(s) 555, 820
LmnI GCTCC 7 cut(s) 155, 220, 257, 425, 509, 839, 949
Lsp1109I GCAGC 4 cut(s) 306, 1039, 1188, 1360
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 26, 1206
MaeII ACGT 1 cut(s) 1010
MaeIII GTNAC 2 cut(s) 1127, 1162
MalI GATC 2 cut(s) 557, 822
MbiI CCGCTC 2 cut(s) 450, 802
MboI GATC 2 cut(s) 555, 820
MboII GAAGA 1 cut(s) 605
MhlI GDGCHC 3 cut(s) 506, 1119, 1323
MluCI AATT 3 cut(s) 107, 585, 1339
MlyI GAGTC 7 cut(s) 401, 491, 805, 992, 996, 1077, 1301
MmeI TCCRAC 4 cut(s) 435, 1051, 1256, 1372
MroI TCCGGA 1 cut(s) 946
MroNI GCCGGC 1 cut(s) 671
MslI CAYNNNNRTG 1 cut(s) 863
MspA1I CMGCKG 1 cut(s) 1030
MspR9I CCNGG 8 cut(s) 219, 683, 701, 776, 1003, 1114, 1323, 1324
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 1 cut(s) 776
MvnI CGCG 2 cut(s) 148, 428
MwoI GCNNNNNNNGC 6 cut(s) 168, 339, 434, 456, 549, 710
NaeI GCCGGC 1 cut(s) 673
NciI CCSGG 7 cut(s) 219, 683, 701, 1003, 1114, 1323, 1324
NdeII GATC 2 cut(s) 555, 820
NgoMIV GCCGGC 1 cut(s) 671
NlaIII CATG 3 cut(s) 286, 595, 868
NlaIV GGNNCC 5 cut(s) 253, 311, 945, 1321, 1327
NmeAIII GCCGAG 5 cut(s) 228, 630, 789, 1078, 1091
NmuCI GTSAC 1 cut(s) 1162
PaeR7I CTCGAG 1 cut(s) 479
PcsI WCGNNNNNNNCGW 2 cut(s) 816, 987
PctI GAATGC 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 673
PfeI GAWTC 1 cut(s) 610
PflFI GACNNNGTC 1 cut(s) 302
PfoI TCCNGGA 2 cut(s) 217, 1001
PkrI GCNGC 9 cut(s) 296, 394, 427, 815, 1026, 1029, 1203, 1295, 1350
PleI GAGTC 7 cut(s) 401, 490, 804, 992, 995, 1076, 1301
PpsI GAGTC 7 cut(s) 401, 490, 804, 992, 995, 1076, 1301
Psp6I CCWGG 1 cut(s) 774
PspFI CCCAGC 3 cut(s) 264, 705, 726
PspGI CCWGG 1 cut(s) 774
PspN4I GGNNCC 5 cut(s) 253, 311, 945, 1321, 1327
PspOMI GGGCCC 1 cut(s) 1319
PspPI GGNCC 6 cut(s) 703, 778, 1121, 1319, 1320, 1326
PsrI GAACNNNNNNTAC 2 cut(s) 1205, 1237
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 863
SatI GCNGC 9 cut(s) 295, 393, 426, 814, 1025, 1028, 1202, 1294, 1349
Sau3AI GATC 2 cut(s) 555, 820
Sau96I GGNCC 6 cut(s) 703, 778, 1121, 1319, 1320, 1326
ScaI AGTACT 1 cut(s) 30
SchI GAGTC 7 cut(s) 401, 491, 805, 992, 996, 1077, 1301
ScrFI CCNGG 8 cut(s) 219, 683, 701, 776, 1003, 1114, 1323, 1324
SduI GDGCHC 3 cut(s) 506, 1119, 1323
SfaNI GCATC 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 479
SinI GGWCC 1 cut(s) 778
SlaI CTCGAG 1 cut(s) 479
SmaI CCCGGG 1 cut(s) 1324
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 3 cut(s) 107, 585, 1339
SspMI CTAG 2 cut(s) 26, 1206
StyD4I CCNGG 8 cut(s) 217, 681, 699, 774, 1001, 1112, 1321, 1322
TaaI ACNGT 5 cut(s) 473, 752, 899, 983, 1238
TaiI ACGT 1 cut(s) 1013
TaqI TCGA 4 cut(s) 327, 480, 966, 1059
TaqII GACCGA 1 cut(s) 795
TasI AATT 3 cut(s) 107, 585, 1339
TatI WGTACW 1 cut(s) 28
TauI GCSGC 5 cut(s) 395, 428, 816, 1027, 1296
TfiI GAWTC 1 cut(s) 610
TscAI CASTG 2 cut(s) 1198, 1415
TseFI GTSAC 1 cut(s) 1162
TseI GCWGC 4 cut(s) 294, 1027, 1201, 1348
Tsp45I GTSAC 1 cut(s) 1162
TspDTI ATGAA 2 cut(s) 1301, 1404
TspGWI ACGGA 3 cut(s) 561, 591, 1247
TspMI CCCGGG 1 cut(s) 1322
TspRI CASTG 2 cut(s) 1198, 1415
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 778
XapI RAATTY 1 cut(s) 107
XhoI CTCGAG 1 cut(s) 479
XmaI CCCGGG 1 cut(s) 1322
XspI CTAG 2 cut(s) 26, 1206
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.