Rroxscaffold_3G00254060

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
48216668 .. 48218113
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254060.1

Sequence Viewer

Length: 1446 bp
ATGGCGTCTCCTACTCCTCTGTTTCTAGTACTCTGTTTCACTTACTTCTCTGTCTCATTCTCCCAAACACTCTTCCTCCCCCTAACCCACTCCCTCTCCCAAACCCAATTCAACACCACCCACCACCTCCTCAAAGCCACTGCCACGCGCTCCGCCACCCGCTTCCACCGCCACCAACACCACCGCAAAACCAACCAAGTCTCTCTCCCACTCGCTCCGGGAAGCGACTACACTCTCTCCTTCACTCTCGGCTCCACCCCTCCCCAGCCCATCTCCCTCTACATGGACACCGGCAGCGACCTCGTCTGGTTCCCCTGCTCTCCCTTCGAGTGCATTCTCTGCGAAGGCAAGCCCAACTCCTCCTTCCCCCCGCCCAAAATCCCCAAAAACGCCGCCGTTTCCTGCGACTCCCACTCCTGCTCCGCCGCGCACTCCGCCCTTAGTTCCCGCTCTCTCTGCGCCATAGCCAACTGTCCTCTCGAGTCCATTGAGCTCTCCGAGTGCTCCTCTTTCAAATGCCCGCCGTTTTATTATGCCTACGGCGACGGAAGCTTGATCTCCAAGCTTTTCAGATACAGCTTATCAATTCCCATGTCAACTCCGTCGTTGATTCTTCCGAACTTCACTTTCGGGTGTTCCCATTCGGCCCTCGGCGAGCCTATTGGGGTTGCCGGCTTCGGCCGGGGACTGCTTTCTCTCCCGGCCCAGCTCGCCAAGTCCTCTCCCCAGCTCGGTAATCAGTTCTCTTACTGTTTGGTTTCTCACTCCTTTGACCAGGACCGAATTCGGAAACCGAGTCCGCTCATTCTTGGCCGGTACGATCAGAAATCTGTTTATGGAGCTGATGAGTATATCTACACCTCCATGCTTTACAACCCGAAACACCCCTATTTCTACTGTGTTGGTTTGGCCGGAATATCTGTCGGGAAAAGGGTTGTTCCGGCTCCCGAGTTTCTCAAAAGGGTCGATGAGAAAGGGAACGGTGGAGTTGTGGTGGACTCCGGGACGACGTTCACTATGTTGCCGCAGCGGTTCTATAACTCGTTGGTGGCCGAGTTCGACCGCCGAGTCGGACGAGTTCACAAGCGGGCGACTAAGGTTGAGGACGGAACCGGGCTCGGGCCGTGTTACTACTACGACGCCGTTGTGGAAGTTCCCACCGTGACTTTGCATTTTGTGGGGAACAAATCAAGTGTGGTGCTGCCTAGGAAGAACTATTTCTACGAGTTTACGGACGGTGGCGATGGAGTGGGGAGGAAGCGGAAAGTGGGGTGTTGGATGTTGATGAACGGTGGCGATGGGAAGGACTCGGGCGGTGGGCCGGGGGCCATTTTTGGGAATTACCAGCAGCAAGGGTTTGAGGTGGTTTATGATTTGGAGAAGCACAGGGTTGGATTTGCAAAGAGGCAGTGTTCATTGCTTTGGGACAATCTGAACCGGAGGTAG

Protein Analysis

481

Amino Acids

52.98

Weight (kDa)

8.93

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 77 - 269 1.2e-27 Xylanase inhibitor N-terminal
Asp PF00026 77 - 468 7.3e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 299 - 468 2.4e-28 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16563
fragaria_vesca FvH4_5g18770
malus_domestica MD06G1060000.v1.1
prunus_persica Prupe.5G070800_v2.0.a1
pyrus_communis pycom06g04960
rosa_chinensis RchiOBHm_Chr7g0203111
rosa_laevigata RLG00000003550
rosa_roxburghii Rroxscaffold_3G00254060
rosa_rugosa Rorug07G0074700
rosa_samantha Rh7AG203500 Rh7BG203100 Rh7CG214300 Rh7DG210200
rosa_wichuraiana Rw7G017760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1067
AccBSI CCGCTC 2 cut(s) 450, 802
AccII CGCG 2 cut(s) 148, 428
AcoI YGGCCR 4 cut(s) 679, 811, 909, 1050
AcsI RAATTY 1 cut(s) 783
AcyI GRCGYC 2 cut(s) 5, 1140
AfaI GTAC 2 cut(s) 30, 818
AfiI CCNNNNNNNGG 4 cut(s) 283, 731, 1119, 1335
AgsI TTSAA 2 cut(s) 112, 514
AjnI CCWGG 1 cut(s) 774
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 7 cut(s) 493, 552, 565, 579, 709, 730, 842
AluI AGCT 7 cut(s) 493, 552, 565, 579, 709, 730, 842
Alw21I GWGCWC 2 cut(s) 495, 506
Alw26I GTCTC 3 cut(s) 12, 58, 205
Ama87I CYCGRG 4 cut(s) 479, 947, 1118, 1309
AoxI GGCC 9 cut(s) 645, 679, 702, 811, 909, 1050, 1121, 1319, 1326
ApeKI GCWGC 4 cut(s) 294, 1027, 1201, 1348
ApoI RAATTY 1 cut(s) 783
Asp700I GAANNNNTTC 1 cut(s) 1217
AspA2I CCTAGG 1 cut(s) 1205
AspLEI GCGC 3 cut(s) 150, 430, 461
AspS9I GGNCC 6 cut(s) 646, 703, 778, 1121, 1319, 1326
AsuC2I CCSGG 6 cut(s) 219, 683, 701, 1003, 1114, 1323
AvaI CYCGRG 4 cut(s) 479, 947, 1118, 1309
AvaII GGWCC 1 cut(s) 778
AvrII CCTAGG 1 cut(s) 1205
BanII GRGCYC 2 cut(s) 495, 1119
Bbv12I GWGCWC 2 cut(s) 495, 506
BbvI GCAGC 4 cut(s) 306, 1039, 1188, 1360
BccI CCATC 3 cut(s) 278, 1238, 1292
BceAI ACGGC 5 cut(s) 380, 508, 556, 1108, 1127
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 1 cut(s) 776
BcnI CCSGG 6 cut(s) 219, 683, 701, 1003, 1114, 1323
BcoDI GTCTC 3 cut(s) 12, 58, 205
BfaI CTAG 2 cut(s) 26, 1206
BisI GCNGC 7 cut(s) 295, 393, 426, 1025, 1028, 1202, 1349
BlnI CCTAGG 1 cut(s) 1205
BlsI GCNGC 7 cut(s) 296, 394, 427, 1026, 1029, 1203, 1350
BmcAI AGTACT 1 cut(s) 30
Bme1390I CCNGG 7 cut(s) 219, 683, 701, 776, 1003, 1114, 1323
Bme18I GGWCC 1 cut(s) 778
BmeT110I CYCGRG 4 cut(s) 479, 947, 1118, 1309
BmgT120I GGNCC 6 cut(s) 646, 703, 778, 1121, 1319, 1326
BmiI GGNNCC 5 cut(s) 253, 311, 945, 1111, 1327
BmrFI CCNGG 7 cut(s) 219, 683, 701, 776, 1003, 1114, 1323
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpuMI CCSGG 6 cut(s) 219, 683, 701, 1003, 1114, 1323
BsaHI GRCGYC 2 cut(s) 5, 1140
BsaJI CCNNGG 4 cut(s) 649, 682, 1205, 1322
BsaWI WCCGGW 1 cut(s) 1437
Bsc4I CCNNNNNNNGG 4 cut(s) 283, 731, 1119, 1335
Bse118I RCCGGY 3 cut(s) 290, 671, 813
Bse3DI GCAATG 1 cut(s) 1415
BseBI CCWGG 1 cut(s) 776
BseDI CCNNGG 4 cut(s) 649, 682, 1205, 1322
BseGI GGATG 1 cut(s) 1284
BseLI CCNNNNNNNGG 4 cut(s) 283, 731, 1119, 1335
BseMI GCAATG 1 cut(s) 1415
BseRI GAGGAG 4 cut(s) 6, 119, 349, 496
BseX3I CGGCCG 1 cut(s) 679
BseXI GCAGC 4 cut(s) 306, 1039, 1188, 1360
BseYI CCCAGC 3 cut(s) 264, 705, 726
Bsh1236I CGCG 2 cut(s) 148, 428
Bsh1285I CGRYCG 2 cut(s) 682, 1063
BshFI GGCC 9 cut(s) 647, 681, 704, 813, 911, 1052, 1123, 1321, 1328
BsiEI CGRYCG 2 cut(s) 682, 1063
BsiHKAI GWGCWC 2 cut(s) 495, 506
BsiHKCI CYCGRG 4 cut(s) 479, 947, 1118, 1309
BslFI GGGAC 3 cut(s) 699, 1018, 1439
BslI CCNNNNNNNGG 4 cut(s) 283, 731, 1119, 1335
BsmAI GTCTC 3 cut(s) 12, 58, 205
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 3 cut(s) 699, 1018, 1439
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 9 cut(s) 647, 681, 704, 813, 911, 1052, 1123, 1321, 1328
BsoBI CYCGRG 4 cut(s) 479, 947, 1118, 1309
Bsp1286I GDGCHC 3 cut(s) 495, 506, 1119
Bsp143I GATC 2 cut(s) 555, 820
BspANI GGCC 9 cut(s) 647, 681, 704, 813, 911, 1052, 1123, 1321, 1328
BspFNI CGCG 2 cut(s) 148, 428
BspLI GGNNCC 5 cut(s) 253, 311, 945, 1111, 1327
BsrBI CCGCTC 2 cut(s) 450, 802
BsrDI GCAATG 1 cut(s) 1415
BsrFI RCCGGY 3 cut(s) 290, 671, 813
BssAI RCCGGY 3 cut(s) 290, 671, 813
BssECI CCNNGG 4 cut(s) 649, 682, 1205, 1322
BssMI GATC 2 cut(s) 555, 820
BssNI GRCGYC 2 cut(s) 5, 1140
BssT1I CCWWGG 1 cut(s) 1205
Bst2UI CCWGG 1 cut(s) 776
Bst4CI ACNGT 7 cut(s) 473, 752, 899, 983, 1162, 1238, 1292
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 2 cut(s) 5, 1140
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 6 cut(s) 350, 521, 656, 673, 711, 1089
BstDEI CTNAG 2 cut(s) 440, 1095
BstF5I GGATG 1 cut(s) 1284
BstFNI CGCG 2 cut(s) 148, 428
BstHHI GCGC 3 cut(s) 150, 430, 461
BstKTI GATC 2 cut(s) 558, 823
BstMAI GTCTC 3 cut(s) 12, 58, 205
BstMBI GATC 2 cut(s) 555, 820
BstMCI CGRYCG 2 cut(s) 682, 1063
BstMWI GCNNNNNNNGC 6 cut(s) 168, 339, 434, 456, 549, 710
BstNI CCWGG 1 cut(s) 776
BstSCI CCNGG 7 cut(s) 217, 681, 699, 774, 1001, 1112, 1321
BstUI CGCG 2 cut(s) 148, 428
BstV1I GCAGC 4 cut(s) 306, 1039, 1188, 1360
BstZI CGGCCG 1 cut(s) 679
BsuRI GGCC 9 cut(s) 647, 681, 704, 813, 911, 1052, 1123, 1321, 1328
BtgZI GCGATG 2 cut(s) 1257, 1311
BtsCI GGATG 1 cut(s) 1284
BtsI GCAGTG 2 cut(s) 138, 1415
BtsIMutI CAGTG 2 cut(s) 138, 1415
Cac8I GCNNGC 6 cut(s) 350, 521, 656, 673, 711, 1089
CfoI GCGC 3 cut(s) 150, 430, 461
Cfr10I RCCGGY 3 cut(s) 290, 671, 813
Cfr13I GGNCC 6 cut(s) 646, 703, 778, 1121, 1319, 1326
CseI GACGC 1 cut(s) 1148
Csp6I GTAC 2 cut(s) 29, 817
CviAII CATG 3 cut(s) 283, 592, 865
CviQI GTAC 2 cut(s) 29, 817
DdeI CTNAG 2 cut(s) 440, 1095
DpnI GATC 2 cut(s) 557, 822
DpnII GATC 2 cut(s) 555, 820
DrdI GACNNNNNNGTC 1 cut(s) 1067
DseDI GACNNNNNNGTC 1 cut(s) 1067
EaeI YGGCCR 4 cut(s) 679, 811, 909, 1050
EagI CGGCCG 1 cut(s) 679
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 3 cut(s) 142, 412, 424
Ecl136II GAGCTC 1 cut(s) 493
EclXI CGGCCG 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 1205
Eco24I GRGCYC 2 cut(s) 495, 1119
Eco47I GGWCC 1 cut(s) 778
Eco52I CGGCCG 1 cut(s) 679
Eco53kI GAGCTC 1 cut(s) 493
Eco88I CYCGRG 4 cut(s) 479, 947, 1118, 1309
EcoICRI GAGCTC 1 cut(s) 493
EcoRI GAATTC 1 cut(s) 783
EcoRII CCWGG 1 cut(s) 774
EcoT14I CCWWGG 1 cut(s) 1205
EcoT38I GRGCYC 2 cut(s) 495, 1119
ErhI CCWWGG 1 cut(s) 1205
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 3 cut(s) 286, 595, 868
FaqI GGGAC 3 cut(s) 699, 1018, 1439
FatI CATG 3 cut(s) 282, 591, 864
FauI CCCGC 5 cut(s) 167, 378, 455, 528, 1080
Fnu4HI GCNGC 7 cut(s) 295, 393, 426, 1025, 1028, 1202, 1349
FokI GGATG 1 cut(s) 1291
FriOI GRGCYC 2 cut(s) 495, 1119
Fsp4HI GCNGC 7 cut(s) 295, 393, 426, 1025, 1028, 1202, 1349
FspBI CTAG 2 cut(s) 26, 1206
GlaI GCGC 3 cut(s) 149, 429, 460
GluI GCNGC 7 cut(s) 295, 393, 426, 1025, 1028, 1202, 1349
GsaI CCCAGC 3 cut(s) 268, 709, 730
HaeIII GGCC 9 cut(s) 647, 681, 704, 813, 911, 1052, 1123, 1321, 1328
HgaI GACGC 1 cut(s) 1148
HhaI GCGC 3 cut(s) 150, 430, 461
Hin1I GRCGYC 2 cut(s) 5, 1140
Hin1II CATG 3 cut(s) 286, 595, 868
Hin6I GCGC 3 cut(s) 148, 428, 459
HinP1I GCGC 3 cut(s) 148, 428, 459
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 2 cut(s) 550, 563
HinfI GANTC 7 cut(s) 407, 482, 610, 796, 998, 1068, 1307
Hpy166II GTNNAC 5 cut(s) 597, 997, 1014, 1081, 1230
Hpy188I TCNGA 7 cut(s) 499, 572, 618, 789, 825, 1073, 1434
Hpy188III TCNNGA 3 cut(s) 479, 925, 947
Hpy8I GTNNAC 5 cut(s) 597, 997, 1014, 1081, 1230
Hpy99I CGWCG 4 cut(s) 548, 607, 1012, 1142
HpyAV CCTTC 5 cut(s) 250, 334, 338, 373, 1297
HpyCH4III ACNGT 7 cut(s) 473, 752, 899, 983, 1162, 1238, 1292
HpyCH4IV ACGT 1 cut(s) 1010
HpyCH4V TGCA 3 cut(s) 333, 1171, 1400
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 339, 434, 456, 549, 710
HpyF3I CTNAG 2 cut(s) 440, 1095
HpySE526I ACGT 1 cut(s) 1010
Hsp92I GRCGYC 2 cut(s) 5, 1140
Hsp92II CATG 3 cut(s) 286, 595, 868
HspAI GCGC 3 cut(s) 148, 428, 459
KroI GCCGGC 1 cut(s) 671
KroNI GCCGGC 1 cut(s) 673
Kzo9I GATC 2 cut(s) 555, 820
LmnI GCTCC 7 cut(s) 155, 220, 257, 425, 509, 839, 949
Lsp1109I GCAGC 4 cut(s) 306, 1039, 1188, 1360
MaeI CTAG 2 cut(s) 26, 1206
MaeII ACGT 1 cut(s) 1010
MaeIII GTNAC 2 cut(s) 1127, 1162
MalI GATC 2 cut(s) 557, 822
MbiI CCGCTC 2 cut(s) 450, 802
MboI GATC 2 cut(s) 555, 820
MboII GAAGA 3 cut(s) 64, 605, 1222
MhlI GDGCHC 3 cut(s) 495, 506, 1119
MluCI AATT 4 cut(s) 107, 585, 783, 1339
MlyI GAGTC 6 cut(s) 401, 491, 805, 992, 1077, 1301
MmeI TCCRAC 3 cut(s) 1051, 1256, 1372
MroNI GCCGGC 1 cut(s) 671
MroXI GAANNNNTTC 1 cut(s) 1217
MslI CAYNNNNRTG 1 cut(s) 863
MspA1I CMGCKG 1 cut(s) 1030
MspR9I CCNGG 7 cut(s) 219, 683, 701, 776, 1003, 1114, 1323
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 1 cut(s) 776
MvnI CGCG 2 cut(s) 148, 428
MwoI GCNNNNNNNGC 6 cut(s) 168, 339, 434, 456, 549, 710
NaeI GCCGGC 1 cut(s) 673
NciI CCSGG 6 cut(s) 219, 683, 701, 1003, 1114, 1323
NdeII GATC 2 cut(s) 555, 820
NgoMIV GCCGGC 1 cut(s) 671
NlaIII CATG 3 cut(s) 286, 595, 868
NlaIV GGNNCC 5 cut(s) 253, 311, 945, 1111, 1327
NmeAIII GCCGAG 4 cut(s) 228, 630, 1078, 1091
NmuCI GTSAC 1 cut(s) 1162
PaeR7I CTCGAG 1 cut(s) 479
PctI GAATGC 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 1217
PfeI GAWTC 1 cut(s) 610
PflFI GACNNNGTC 1 cut(s) 302
PfoI TCCNGGA 2 cut(s) 217, 1001
PkrI GCNGC 7 cut(s) 296, 394, 427, 1026, 1029, 1203, 1350
PleI GAGTC 6 cut(s) 401, 490, 804, 992, 1076, 1301
PpsI GAGTC 6 cut(s) 401, 490, 804, 992, 1076, 1301
Psp124BI GAGCTC 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 774
PspFI CCCAGC 3 cut(s) 264, 705, 726
PspGI CCWGG 1 cut(s) 774
PspN4I GGNNCC 5 cut(s) 253, 311, 945, 1111, 1327
PspPI GGNCC 6 cut(s) 646, 703, 778, 1121, 1319, 1326
PsrI GAACNNNNNNTAC 2 cut(s) 1205, 1237
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 2 cut(s) 30, 818
RsaNI GTAC 2 cut(s) 29, 817
RseI CAYNNNNRTG 1 cut(s) 863
SacI GAGCTC 1 cut(s) 495
SatI GCNGC 7 cut(s) 295, 393, 426, 1025, 1028, 1202, 1349
Sau3AI GATC 2 cut(s) 555, 820
Sau96I GGNCC 6 cut(s) 646, 703, 778, 1121, 1319, 1326
ScaI AGTACT 1 cut(s) 30
SchI GAGTC 6 cut(s) 401, 491, 805, 992, 1077, 1301
ScrFI CCNGG 7 cut(s) 219, 683, 701, 776, 1003, 1114, 1323
SduI GDGCHC 3 cut(s) 495, 506, 1119
Sfr274I CTCGAG 1 cut(s) 479
SinI GGWCC 1 cut(s) 778
SlaI CTCGAG 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 4 cut(s) 107, 585, 783, 1339
SspMI CTAG 2 cut(s) 26, 1206
SstI GAGCTC 1 cut(s) 495
StyD4I CCNGG 7 cut(s) 217, 681, 699, 774, 1001, 1112, 1321
StyI CCWWGG 1 cut(s) 1205
TaaI ACNGT 7 cut(s) 473, 752, 899, 983, 1162, 1238, 1292
TaiI ACGT 1 cut(s) 1013
TaqI TCGA 4 cut(s) 327, 480, 966, 1059
TaqII GACCGA 1 cut(s) 795
TasI AATT 4 cut(s) 107, 585, 783, 1339
TatI WGTACW 1 cut(s) 28
TauI GCSGC 3 cut(s) 395, 428, 1027
TfiI GAWTC 1 cut(s) 610
TscAI CASTG 2 cut(s) 145, 1415
TseFI GTSAC 1 cut(s) 1162
TseI GCWGC 4 cut(s) 294, 1027, 1201, 1348
Tsp45I GTSAC 1 cut(s) 1162
TspDTI ATGAA 2 cut(s) 1301, 1404
TspGWI ACGGA 4 cut(s) 561, 591, 1122, 1247
TspRI CASTG 2 cut(s) 145, 1415
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 778
XapI RAATTY 1 cut(s) 783
XhoI CTCGAG 1 cut(s) 479
XmaJI CCTAGG 1 cut(s) 1205
XmnI GAANNNNTTC 1 cut(s) 1217
XspI CTAG 2 cut(s) 26, 1206
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.