Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016691

Physical Location & Seq

Genomic Coordinates Reverse (-)

20793139 .. 20794371

Gene Structure 1233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18178

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCAACTCCGTCGCTGATTCTTCCGAACTTCACTTTCGGGTGTTCCCATTCTGCCCTCGGCGAGCCTATTGGGGTTGCCGGCTTCGGCCGGGGACTGCTTTCTCTCCCGGCCCAGCTCGCCAAGTCCTCTCCCCAGCTCGGTAATCAGTTCTCTTACTGTTTGGTTTCTCACTCCTTTGACCAGGACCGAGTTCGGAAACCGAGTCCGCTCATTCTCGGCCGGTACGATCAGAAATCGGTTTATGGAGCGGATCAGTATATCTACACCTCCATGCTTTACAACCCGAAGCACCCCTATTTCTACTGTGTTGGTTTGGCCGGAATATCTGTCGGGAAAAGGTTTGTTCCGGCTCCGGAGTTTCTCAAAAGGGTCGATGAGAAAGGGAACGGTGGAGTTGTGGTGGACTCCGGGACGACGTTCACTATGTTGCCGCAGCGGTTCTATAACTCGTTGGTGGCCGAGTTCGACCGCCGAGTCGGACGAGTTCACAAGCGGGCGACTAAGGTTGAGGACGGAACCGGGCTCGGGCCGTGTTACTACTACGACGCCGTTGTGGAAGTTCCCGCCGTGGCTTTGCATTTTGTGGGGAACAAATCCAGTGTGGTGCTGCCTAGAAAGAACTATTTTTACGAGTTTACGGACGGTGGCGATGGGGTGGGAAGGAAGCGGAAAGTGGGGTGTTGGATGTTGATGAACGGCGGCGATGAGAAGGACTCGGGCGGTGGGCCCGGGGCCATTTTGGGGAATTACCAGCAGCAAGGGTTTGAGGTGGTTTATGATTTGGAGAAGCACAGGGTTGGATTTGCAAAGAGGCAGTGTTCATTGCTTTGGGACAATCTGAGCCAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009505 GO:0016787 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044238 GO:0044464 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

284

Amino Acids

31.32

Weight (kDa)

9.11

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	7 - 74	2.3e-10	Xylanase inhibitor N-terminal
Asp	PF00026	65 - 271	3.8e-07	Eukaryotic aspartyl protease
TAXi_C	PF14541	102 - 271	9.1e-28	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16563
fragaria_vesca	FvH4_5g18770
malus_domestica	MD06G1060000.v1.1
prunus_persica	Prupe.5G070800_v2.0.a1
pyrus_communis	pycom06g04960
rosa_chinensis	RchiOBHm_Chr7g0203111
rosa_laevigata	RLG00000003550
rosa_roxburghii	Rroxscaffold_3G00254060
rosa_rugosa	Rorug07G0074700
rosa_samantha	Rh7AG203500 Rh7BG203100 Rh7CG214300 Rh7DG210200
rosa_wichuraiana	Rw7G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	476
AccBSI	CCGCTC	2 cut(s)	211, 251
AccIII	TCCGGA	1 cut(s)	355
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	4 cut(s)	88, 220, 318, 459
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	3 cut(s)	140, 528, 744
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	118, 139
AluI	AGCT	2 cut(s)	118, 139
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	3 cut(s)	527, 718, 731
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	8 cut(s)	88, 111, 220, 318, 459, 530, 728, 735
ApaI	GGGCCC	1 cut(s)	732
ApeKI	GCWGC	3 cut(s)	436, 610, 757
AspS9I	GGNCC	6 cut(s)	112, 187, 530, 728, 729, 735
AsuC2I	CCSGG	6 cut(s)	92, 110, 412, 523, 732, 733
AvaI	CYCGRG	3 cut(s)	527, 718, 731
AvaII	GGWCC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	732
BanII	GRGCYC	2 cut(s)	528, 732
BbvI	GCAGC	3 cut(s)	448, 597, 769
BccI	CCATC	1 cut(s)	647
BceAI	ACGGC	4 cut(s)	517, 536, 554, 715
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	6 cut(s)	92, 110, 412, 523, 732, 733
BfaI	CTAG	1 cut(s)	615
BisI	GCNGC	5 cut(s)	434, 437, 611, 703, 758
BlsI	GCNGC	5 cut(s)	435, 438, 612, 704, 759
Bme1390I	CCNGG	7 cut(s)	92, 110, 185, 412, 523, 732, 733
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	3 cut(s)	527, 718, 731
BmgT120I	GGNCC	6 cut(s)	112, 187, 530, 728, 729, 735
BmiI	GGNNCC	4 cut(s)	354, 520, 730, 736
BmrFI	CCNGG	7 cut(s)	92, 110, 185, 412, 523, 732, 733
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpuMI	CCSGG	6 cut(s)	92, 110, 412, 523, 732, 733
BsaHI	GRCGYC	1 cut(s)	549
BsaJI	CCNNGG	5 cut(s)	58, 91, 570, 731, 732
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 528, 744
Bse118I	RCCGGY	2 cut(s)	80, 222
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	1 cut(s)	824
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	5 cut(s)	58, 91, 570, 731, 732
BseGI	GGATG	1 cut(s)	693
BseLI	CCNNNNNNNGG	3 cut(s)	140, 528, 744
BseMI	GCAATG	1 cut(s)	824
BseMII	CTCAG	1 cut(s)	833
BseNI	ACTGG	1 cut(s)	600
BseSI	GKGCMC	1 cut(s)	732
BseX3I	CGGCCG	2 cut(s)	88, 220
BseXI	GCAGC	3 cut(s)	448, 597, 769
BseYI	CCCAGC	2 cut(s)	114, 135
Bsh1285I	CGRYCG	3 cut(s)	91, 223, 472
BshFI	GGCC	8 cut(s)	90, 113, 222, 320, 461, 532, 730, 737
BsiEI	CGRYCG	3 cut(s)	91, 223, 472
BsiHKCI	CYCGRG	3 cut(s)	527, 718, 731
BslFI	GGGAC	3 cut(s)	108, 427, 848
BslI	CCNNNNNNNGG	3 cut(s)	140, 528, 744
BsmFI	GGGAC	3 cut(s)	108, 427, 848
BsnI	GGCC	8 cut(s)	90, 113, 222, 320, 461, 532, 730, 737
BsoBI	CYCGRG	3 cut(s)	527, 718, 731
Bsp120I	GGGCCC	1 cut(s)	728
Bsp1286I	GDGCHC	2 cut(s)	528, 732
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	229, 253
BspANI	GGCC	8 cut(s)	90, 113, 222, 320, 461, 532, 730, 737
BspCNI	CTCAG	1 cut(s)	834
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	4 cut(s)	354, 520, 730, 736
BspPI	GGATC	1 cut(s)	261
BsrBI	CCGCTC	2 cut(s)	211, 251
BsrDI	GCAATG	1 cut(s)	824
BsrFI	RCCGGY	2 cut(s)	80, 222
BsrI	ACTGG	1 cut(s)	600
BssAI	RCCGGY	2 cut(s)	80, 222
BssECI	CCNNGG	5 cut(s)	58, 91, 570, 731, 732
BssMI	GATC	2 cut(s)	229, 253
BssNI	GRCGYC	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	4 cut(s)	161, 308, 392, 647
BstACI	GRCGYC	1 cut(s)	549
BstC8I	GCNNGC	4 cut(s)	65, 82, 120, 498
BstDEI	CTNAG	2 cut(s)	504, 842
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	693
BstKTI	GATC	2 cut(s)	232, 256
BstMBI	GATC	2 cut(s)	229, 253
BstMCI	CGRYCG	3 cut(s)	91, 223, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	7 cut(s)	90, 108, 183, 410, 521, 730, 731
BstSLI	GKGCMC	1 cut(s)	732
BstV1I	GCAGC	3 cut(s)	448, 597, 769
BstZI	CGGCCG	2 cut(s)	88, 220
BsuRI	GGCC	8 cut(s)	90, 113, 222, 320, 461, 532, 730, 737
BtgI	CCRYGG	1 cut(s)	570
BtgZI	GCGATG	2 cut(s)	666, 720
BtsCI	GGATG	1 cut(s)	693
BtsI	GCAGTG	1 cut(s)	824
BtsIMutI	CAGTG	2 cut(s)	607, 824
Cac8I	GCNNGC	4 cut(s)	65, 82, 120, 498
Cfr10I	RCCGGY	2 cut(s)	80, 222
Cfr13I	GGNCC	6 cut(s)	112, 187, 530, 728, 729, 735
Cfr9I	CCCGGG	1 cut(s)	731
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	504, 842
DpnI	GATC	2 cut(s)	231, 255
DpnII	GATC	2 cut(s)	229, 253
DrdI	GACNNNNNNGTC	1 cut(s)	476
DseDI	GACNNNNNNGTC	1 cut(s)	476
EaeI	YGGCCR	4 cut(s)	88, 220, 318, 459
EagI	CGGCCG	2 cut(s)	88, 220
EclXI	CGGCCG	2 cut(s)	88, 220
Eco24I	GRGCYC	2 cut(s)	528, 732
Eco47I	GGWCC	1 cut(s)	187
Eco52I	CGGCCG	2 cut(s)	88, 220
Eco88I	CYCGRG	3 cut(s)	527, 718, 731
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	2 cut(s)	528, 732
FaeI	CATG	1 cut(s)	277
FaiI	YATR	6 cut(s)	246, 261, 275, 428, 447, 780
FaqI	GGGAC	3 cut(s)	108, 427, 848
FatI	CATG	1 cut(s)	273
FauI	CCCGC	2 cut(s)	489, 574
Fnu4HI	GCNGC	5 cut(s)	434, 437, 611, 703, 758
FokI	GGATG	1 cut(s)	700
FriOI	GRGCYC	2 cut(s)	528, 732
Fsp4HI	GCNGC	5 cut(s)	434, 437, 611, 703, 758
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	5 cut(s)	434, 437, 611, 703, 758
GsaI	CCCAGC	2 cut(s)	118, 139
HaeIII	GGCC	8 cut(s)	90, 113, 222, 320, 461, 532, 730, 737
HgaI	GACGC	1 cut(s)	557
Hin1I	GRCGYC	1 cut(s)	549
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	19, 205, 407, 477, 716
Hpy166II	GTNNAC	5 cut(s)	6, 406, 423, 490, 639
Hpy188I	TCNGA	5 cut(s)	27, 198, 234, 482, 843
Hpy188III	TCNNGA	2 cut(s)	334, 356
Hpy8I	GTNNAC	5 cut(s)	6, 406, 423, 490, 639
Hpy99I	CGWCG	3 cut(s)	16, 421, 551
HpyAV	CCTTC	2 cut(s)	657, 706
HpyCH4III	ACNGT	4 cut(s)	161, 308, 392, 647
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	2 cut(s)	580, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	504, 842
HpySE526I	ACGT	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	549
Hsp92II	CATG	1 cut(s)	277
Kpn2I	TCCGGA	1 cut(s)	355
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	229, 253
LmnI	GCTCC	2 cut(s)	248, 358
Lsp1109I	GCAGC	3 cut(s)	448, 597, 769
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	2 cut(s)	231, 255
MbiI	CCGCTC	2 cut(s)	211, 251
MboI	GATC	2 cut(s)	229, 253
MboII	GAAGA	1 cut(s)	14
MhlI	GDGCHC	2 cut(s)	528, 732
MluCI	AATT	1 cut(s)	748
MlyI	GAGTC	4 cut(s)	214, 401, 486, 710
MmeI	TCCRAC	3 cut(s)	460, 665, 781
MnlI	CCTC	7 cut(s)	68, 139, 280, 505, 763, 807, 843
MroI	TCCGGA	1 cut(s)	355
MroNI	GCCGGC	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	439
MspR9I	CCNGG	7 cut(s)	92, 110, 185, 412, 523, 732, 733
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	119
NaeI	GCCGGC	1 cut(s)	82
NciI	CCSGG	6 cut(s)	92, 110, 412, 523, 732, 733
NdeII	GATC	2 cut(s)	229, 253
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	4 cut(s)	354, 520, 730, 736
NmeAIII	GCCGAG	4 cut(s)	39, 198, 487, 500
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	435, 438, 612, 704, 759
PleI	GAGTC	4 cut(s)	213, 401, 485, 710
PpsI	GAGTC	4 cut(s)	213, 401, 485, 710
Psp6I	CCWGG	1 cut(s)	183
PspFI	CCCAGC	2 cut(s)	114, 135
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	4 cut(s)	354, 520, 730, 736
PspOMI	GGGCCC	1 cut(s)	728
PspPI	GGNCC	6 cut(s)	112, 187, 530, 728, 729, 735
PsrI	GAACNNNNNNTAC	2 cut(s)	614, 646
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	272
SatI	GCNGC	5 cut(s)	434, 437, 611, 703, 758
Sau3AI	GATC	2 cut(s)	229, 253
Sau96I	GGNCC	6 cut(s)	112, 187, 530, 728, 729, 735
SchI	GAGTC	4 cut(s)	214, 401, 486, 710
ScrFI	CCNGG	7 cut(s)	92, 110, 185, 412, 523, 732, 733
SduI	GDGCHC	2 cut(s)	528, 732
SetI	ASST	8 cut(s)	120, 141, 272, 344, 422, 510, 774, 854
SinI	GGWCC	1 cut(s)	187
SmaI	CCCGGG	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	748
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	7 cut(s)	90, 108, 183, 410, 521, 730, 731
TaaI	ACNGT	4 cut(s)	161, 308, 392, 647
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	2 cut(s)	375, 468
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	748
TauI	GCSGC	2 cut(s)	436, 705
TfiI	GAWTC	1 cut(s)	19
TscAI	CASTG	2 cut(s)	607, 824
TseI	GCWGC	3 cut(s)	436, 610, 757
TspDTI	ATGAA	2 cut(s)	710, 813
TspGWI	ACGGA	2 cut(s)	531, 656
TspMI	CCCGGG	1 cut(s)	731
TspRI	CASTG	2 cut(s)	607, 824
VpaK11BI	GGWCC	1 cut(s)	187
XmaI	CCCGGG	1 cut(s)	731
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.