AT4G17100

Endoribonuclease XendoU

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012207
Physical Location & Seq
Reverse (-)
9609910 .. 9612655
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17100.1

Sequence Viewer

Length: 945 bp
ATGTGTGATCACTCTCTTTCTCCGCAGGTCCAGAAGGAGCAATGGCAAGATTACAAACGCCCAGCAAGTGAACAACACTACTCAGACGAAGTTGAAACTTATGGAAACCTAGAACCCTCACAACTAGAGCTCTCAGGTCTCTCAGAAGCTTGCAACAAACTGTGGGAGCTCGATTTAAACCGCCTTGTTCCTGGAAGGGATTATCAAATCGACTGCGGAGATGGGAAAAGGGTCCATGAGAGAGCTGATATGGCTGAAGGACTACTGTTCTCTTGGGTGAGCGAGGAAGTCTCTAGAAAACCGACTTTCGCCAGATTCTGTTCATTGCTTGACAACTACAACCCCAACGAAGGTTACAAAGAAGTGGTCACAGAAGAAGAGAGGCAAGAGCAAGCGGCTTTCATTGAAGAAATTAGCAGAACCTCTGTGATCAAGTACCTTCACAGGTACCTTGTGCTCAAGGACGTCGCTCCTGGAAGCTACTTAGAGTTCAAGAGAATGTTGACAAGTCTCTGGTTCGATCTGTATGGCCGCGGAGGTACATCTGGCTCATCTTCTGCGTTTGAGCATGTCTTTGTAGGTGAGATCAAACAATCTGGTGGGGAACAAGTCTCTGGATTCCATAACTGGCTTCAGTTTTACTTGGAGGAAGCCAAAGGAACTGTAGATTATCAAGGCTATATATTTCCCCGACGTCGCGGTGAAATTCCTGATTCAGAGACTCAGCTGCTAACAATCCAATTCGAGTGGAACGGTGTTCTAAAATCAGTCTCAAGTACTCTAGTTGGAGTAAGTCCAGAGTTCGAGTTGGCTCTATACACCATGTGTTTCTTCATGGGCACAGAAGATAACCACATTCAGTTGGGTCCATACAATGTCAATGTCAAATGTTACCGACTTGGCAACAACCGTATCGGCTCAGCTTTCCCCATTGCAGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XendoU

Protein Analysis

314

Amino Acids

35.95

Weight (kDa)

4.89

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17100
fragaria_vesca FvH4_5g20810 FvH4_5g20810
malus_domestica MD04G1057000.v1.1
prunus_persica Prupe.5G050800_v2.0.a1 Prupe.5G050800_v2.0.a1
pyrus_communis pycom04g05070
rosa_chinensis RchiOBHm_Chr7g0207741
rosa_laevigata RLG00000003291
rosa_multiflora Rmu_sc0005968.1_g000004 Rmu_sc0007645.1_g000005
rosa_roxburghii Rroxscaffold_3G00251190
rosa_rugosa Rorug07G0099300 Rorug07G0099400
rosa_samantha Rh7AG232500 Rh7BG227900 Rh7CG246200 Rh7DG238700
rosa_wichuraiana Rw7G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 468, 697
Acc36I ACCTGC 1 cut(s) 16
Acc65I GGTACC 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 447
AccII CGCG 2 cut(s) 534, 699
AciI CCGC 7 cut(s) 23, 181, 216, 395, 532, 534, 699
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 1 cut(s) 705
AcuI CTGAAG 2 cut(s) 276, 617
AcyI GRCGYC 2 cut(s) 465, 694
AdeI CACNNNGTG 1 cut(s) 825
AfaI GTAC 4 cut(s) 437, 449, 541, 778
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 3 cut(s) 95, 407, 493
AjnI CCWGG 2 cut(s) 190, 472
AluBI AGCT 7 cut(s) 130, 149, 169, 245, 480, 727, 923
AluI AGCT 7 cut(s) 130, 149, 169, 245, 480, 727, 923
Alw21I GWGCWC 3 cut(s) 132, 171, 459
Alw26I GTCTC 6 cut(s) 143, 295, 515, 616, 713, 775
AlwNI CAGNNNCTG 1 cut(s) 318
AoxI GGCC 1 cut(s) 529
ApeKI GCWGC 1 cut(s) 727
ApoI RAATTY 1 cut(s) 705
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
Asp718I GGTACC 1 cut(s) 447
AspS9I GGNCC 3 cut(s) 28, 232, 866
AsuHPI GGTGA 3 cut(s) 289, 593, 713
AvaII GGWCC 3 cut(s) 28, 232, 866
BaeGI GKGCMC 1 cut(s) 842
BaeI ACNNNNGTAYC 2 cut(s) 895, 928
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 2 cut(s) 132, 171
Bbv12I GWGCWC 3 cut(s) 132, 171, 459
BbvI GCAGC 1 cut(s) 714
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 2 cut(s) 192, 474
BclI TGATCA 2 cut(s) 7, 429
BcoDI GTCTC 6 cut(s) 143, 295, 515, 616, 713, 775
BfaI CTAG 4 cut(s) 110, 125, 294, 782
BfmI CTRYAG 1 cut(s) 663
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 3 cut(s) 396, 532, 728
BlpI GCTNAGC 1 cut(s) 919
BlsI GCNGC 3 cut(s) 397, 533, 729
BmcAI AGTACT 1 cut(s) 778
Bme1390I CCNGG 2 cut(s) 192, 474
Bme18I GGWCC 3 cut(s) 28, 232, 866
BmgT120I GGNCC 3 cut(s) 28, 232, 866
BmiI GGNNCC 3 cut(s) 233, 449, 867
BmrFI CCNGG 2 cut(s) 192, 474
BplI GAGNNNNNCTC 2 cut(s) 275, 307
Bpu1102I GCTNAGC 1 cut(s) 919
BpuEI CTTGAG 2 cut(s) 443, 757
BsaHI GRCGYC 2 cut(s) 465, 694
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 532
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 3 cut(s) 47, 323, 930
BseBI CCWGG 2 cut(s) 192, 474
BseDI CCNNGG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 3 cut(s) 47, 323, 930
BseMII CTCAG 5 cut(s) 96, 147, 156, 737, 933
BseNI ACTGG 1 cut(s) 632
BseSI GKGCMC 1 cut(s) 842
BseXI GCAGC 1 cut(s) 714
BseYI CCCAGC 1 cut(s) 61
Bsh1236I CGCG 2 cut(s) 534, 699
BshFI GGCC 1 cut(s) 531
BshNI GGYRCC 1 cut(s) 447
BsiHKAI GWGCWC 3 cut(s) 132, 171, 459
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 6 cut(s) 143, 295, 515, 616, 713, 775
BsnI GGCC 1 cut(s) 531
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 4 cut(s) 132, 171, 459, 842
Bsp143I GATC 4 cut(s) 7, 429, 520, 585
Bsp1720I GCTNAGC 1 cut(s) 919
BspACI CCGC 7 cut(s) 23, 181, 216, 395, 532, 534, 699
BspANI GGCC 1 cut(s) 531
BspCNI CTCAG 5 cut(s) 95, 146, 155, 736, 932
BspFNI CGCG 2 cut(s) 534, 699
BspLI GGNNCC 3 cut(s) 233, 449, 867
BspMI ACCTGC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 447
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 3 cut(s) 47, 323, 930
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 1 cut(s) 532
BssMI GATC 4 cut(s) 7, 429, 520, 585
BssNI GRCGYC 2 cut(s) 465, 694
Bst2UI CCWGG 2 cut(s) 192, 474
Bst4CI ACNGT 5 cut(s) 162, 267, 664, 755, 911
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 2 cut(s) 465, 694
BstC8I GCNNGC 2 cut(s) 151, 393
BstDEI CTNAG 6 cut(s) 82, 133, 142, 484, 723, 919
BstDSI CCRYGG 1 cut(s) 532
BstFNI CGCG 2 cut(s) 534, 699
BstKTI GATC 4 cut(s) 10, 432, 523, 588
BstMAI GTCTC 6 cut(s) 143, 295, 515, 616, 713, 775
BstMBI GATC 4 cut(s) 7, 429, 520, 585
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 192, 474
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 2 cut(s) 190, 472
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 842
BstUI CGCG 2 cut(s) 534, 699
BstV1I GCAGC 1 cut(s) 714
BsuRI GGCC 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 532
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 151, 393
CaiI CAGNNNCTG 1 cut(s) 318
Cfr13I GGNCC 3 cut(s) 28, 232, 866
Cfr42I CCGCGG 1 cut(s) 535
Csp6I GTAC 4 cut(s) 436, 448, 540, 777
CspCI CAANNNNNGTGG 2 cut(s) 728, 763
CviAII CATG 4 cut(s) 236, 569, 823, 835
CviQI GTAC 4 cut(s) 436, 448, 540, 777
DdeI CTNAG 6 cut(s) 82, 133, 142, 484, 723, 919
DpnI GATC 4 cut(s) 9, 431, 522, 587
DpnII GATC 4 cut(s) 7, 429, 520, 585
DraI TTTAAA 1 cut(s) 177
DraIII CACNNNGTG 1 cut(s) 825
EaeI YGGCCR 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Ecl136II GAGCTC 2 cut(s) 130, 169
Eco24I GRGCYC 2 cut(s) 132, 171
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 3 cut(s) 28, 232, 866
Eco53kI GAGCTC 2 cut(s) 130, 169
Eco57I CTGAAG 2 cut(s) 276, 617
EcoICRI GAGCTC 2 cut(s) 130, 169
EcoRII CCWGG 2 cut(s) 190, 472
EcoT38I GRGCYC 2 cut(s) 132, 171
FaeI CATG 4 cut(s) 239, 572, 826, 838
FatI CATG 4 cut(s) 235, 568, 822, 834
FbaI TGATCA 2 cut(s) 7, 429
Fnu4HI GCNGC 3 cut(s) 396, 532, 728
FriOI GRGCYC 2 cut(s) 132, 171
Fsp4HI GCNGC 3 cut(s) 396, 532, 728
FspBI CTAG 4 cut(s) 110, 125, 294, 782
GluI GCNGC 3 cut(s) 396, 532, 728
GsaI CCCAGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 531
Hin1I GRCGYC 2 cut(s) 465, 694
Hin1II CATG 4 cut(s) 239, 572, 826, 838
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 5 cut(s) 315, 618, 713, 721, 938
HphI GGTGA 3 cut(s) 289, 593, 713
Hpy166II GTNNAC 2 cut(s) 71, 504
Hpy188I TCNGA 3 cut(s) 85, 145, 718
Hpy188III TCNNGA 7 cut(s) 31, 294, 493, 615, 710, 797, 942
Hpy8I GTNNAC 2 cut(s) 71, 504
Hpy99I CGWCG 3 cut(s) 470, 696, 699
HpyAV CCTTC 5 cut(s) 28, 189, 251, 344, 449
HpyCH4III ACNGT 5 cut(s) 162, 267, 664, 755, 911
HpyCH4IV ACGT 2 cut(s) 465, 694
HpyCH4V TGCA 2 cut(s) 153, 935
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 6 cut(s) 82, 133, 142, 484, 723, 919
HpySE526I ACGT 2 cut(s) 465, 694
Hsp92I GRCGYC 2 cut(s) 465, 694
Hsp92II CATG 4 cut(s) 239, 572, 826, 838
KpnI GGTACC 1 cut(s) 451
Ksp22I TGATCA 2 cut(s) 7, 429
KspI CCGCGG 1 cut(s) 535
Kzo9I GATC 4 cut(s) 7, 429, 520, 585
LmnI GCTCC 3 cut(s) 37, 166, 475
Lsp1109I GCAGC 1 cut(s) 714
MaeI CTAG 4 cut(s) 110, 125, 294, 782
MaeII ACGT 2 cut(s) 465, 694
MaeIII GTNAC 3 cut(s) 353, 367, 890
MalI GATC 4 cut(s) 9, 431, 522, 587
MboI GATC 4 cut(s) 7, 429, 520, 585
MboII GAAGA 6 cut(s) 386, 389, 419, 546, 823, 857
MhlI GDGCHC 4 cut(s) 132, 171, 459, 842
MluCI AATT 3 cut(s) 411, 705, 740
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 766
MnlI CCTC 6 cut(s) 127, 277, 375, 433, 530, 640
MseI TTAA 1 cut(s) 176
MspA1I CMGCKG 2 cut(s) 534, 727
MspR9I CCNGG 2 cut(s) 192, 474
MvaI CCWGG 2 cut(s) 192, 474
MvnI CGCG 2 cut(s) 534, 699
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 4 cut(s) 7, 429, 520, 585
NlaIII CATG 4 cut(s) 239, 572, 826, 838
NlaIV GGNNCC 3 cut(s) 233, 449, 867
NmuCI GTSAC 1 cut(s) 367
NspI RCATGY 1 cut(s) 572
PfeI GAWTC 4 cut(s) 315, 618, 713, 938
PfoI TCCNGGA 2 cut(s) 190, 472
PkrI GCNGC 3 cut(s) 397, 533, 729
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
Psp124BI GAGCTC 2 cut(s) 132, 171
Psp6I CCWGG 2 cut(s) 190, 472
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 2 cut(s) 190, 472
PspN4I GGNNCC 3 cut(s) 233, 449, 867
PspPI GGNCC 3 cut(s) 28, 232, 866
PstNI CAGNNNCTG 1 cut(s) 318
PvuII CAGCTG 1 cut(s) 727
RsaI GTAC 4 cut(s) 437, 449, 541, 778
RsaNI GTAC 4 cut(s) 436, 448, 540, 777
SacI GAGCTC 2 cut(s) 132, 171
SacII CCGCGG 1 cut(s) 535
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 3 cut(s) 396, 532, 728
Sau3AI GATC 4 cut(s) 7, 429, 520, 585
Sau96I GGNCC 3 cut(s) 28, 232, 866
ScaI AGTACT 1 cut(s) 778
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 2 cut(s) 192, 474
SduI GDGCHC 4 cut(s) 132, 171, 459, 842
SfcI CTRYAG 1 cut(s) 663
Sfr303I CCGCGG 1 cut(s) 535
SgrBI CCGCGG 1 cut(s) 535
SinI GGWCC 3 cut(s) 28, 232, 866
SmlI CTYRAG 2 cut(s) 458, 772
SmoI CTYRAG 2 cut(s) 458, 772
Sse9I AATT 3 cut(s) 411, 705, 740
SsiI CCGC 7 cut(s) 23, 181, 216, 395, 532, 534, 699
SspMI CTAG 4 cut(s) 110, 125, 294, 782
SstI GAGCTC 2 cut(s) 132, 171
StyD4I CCNGG 2 cut(s) 190, 472
TaaI ACNGT 5 cut(s) 162, 267, 664, 755, 911
TaiI ACGT 2 cut(s) 468, 697
TaqI TCGA 5 cut(s) 171, 210, 519, 744, 804
TasI AATT 3 cut(s) 411, 705, 740
TatI WGTACW 1 cut(s) 776
TauI GCSGC 2 cut(s) 398, 534
TfiI GAWTC 4 cut(s) 315, 618, 713, 938
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 1 cut(s) 727
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 312, 391, 823
VpaK11BI GGWCC 3 cut(s) 28, 232, 866
XapI RAATTY 1 cut(s) 705
XbaI TCTAGA 1 cut(s) 293
XceI RCATGY 1 cut(s) 572
XspI CTAG 4 cut(s) 110, 125, 294, 782
ZraI GACGTC 2 cut(s) 466, 695
ZrmI AGTACT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.