poly(U)-specific endoribonuclease-B-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17100 |
| fragaria_vesca | FvH4_5g20810 FvH4_5g20810 |
| malus_domestica | MD04G1057000.v1.1 |
| prunus_persica | Prupe.5G050800_v2.0.a1 Prupe.5G050800_v2.0.a1 |
| pyrus_communis | pycom04g05070 |
| rosa_chinensis | RchiOBHm_Chr7g0207741 |
| rosa_laevigata | RLG00000003291 |
| rosa_multiflora | Rmu_sc0005968.1_g000004 Rmu_sc0007645.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00251190 |
| rosa_rugosa | Rorug07G0099300 Rorug07G0099400 |
| rosa_samantha | Rh7AG232500 Rh7BG227900 Rh7CG246200 Rh7DG238700 |
| rosa_wichuraiana | Rw7G019910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 312 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 891 |
| AccI | GTMKAC | 2 cut(s) | 612, 1072 |
| AclWI | GGATC | 4 cut(s) | 59, 93, 1108, 1300 |
| AcoI | YGGCCR | 1 cut(s) | 907 |
| AcsI | RAATTY | 1 cut(s) | 1178 |
| AcuI | CTGAAG | 3 cut(s) | 492, 519, 995 |
| AdeI | CACNNNGTG | 1 cut(s) | 1203 |
| AfaI | GTAC | 1 cut(s) | 1196 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 727, 728, 891 |
| AflIII | ACRYGT | 1 cut(s) | 946 |
| AgsI | TTSAA | 5 cut(s) | 246, 944, 1025, 1141, 1184 |
| AjiI | CACGTC | 1 cut(s) | 1076 |
| AjnI | CCWGG | 3 cut(s) | 104, 568, 650 |
| AluBI | AGCT | 6 cut(s) | 508, 527, 642, 858, 1145, 1240 |
| AluI | AGCT | 6 cut(s) | 508, 527, 642, 858, 1145, 1240 |
| Alw26I | GTCTC | 3 cut(s) | 359, 670, 1275 |
| AlwI | GGATC | 4 cut(s) | 59, 93, 1108, 1300 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1094 |
| AoxI | GGCC | 5 cut(s) | 70, 380, 415, 437, 907 |
| ApaI | GGGCCC | 1 cut(s) | 74 |
| ApeKI | GCWGC | 3 cut(s) | 263, 639, 773 |
| ApoI | RAATTY | 1 cut(s) | 1178 |
| AspLEI | GCGC | 1 cut(s) | 37 |
| AspS9I | GGNCC | 6 cut(s) | 70, 71, 79, 165, 415, 1244 |
| AsuC2I | CCSGG | 2 cut(s) | 69, 124 |
| AsuHPI | GGTGA | 1 cut(s) | 989 |
| AsuII | TTCGAA | 1 cut(s) | 1122 |
| AvaII | GGWCC | 3 cut(s) | 79, 165, 1244 |
| BaeGI | GKGCMC | 1 cut(s) | 74 |
| BanII | GRGCYC | 3 cut(s) | 74, 112, 1175 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 596, 628 |
| BbvI | GCAGC | 3 cut(s) | 250, 651, 760 |
| BccI | CCATC | 3 cut(s) | 287, 350, 406 |
| BceAI | ACGGC | 2 cut(s) | 452, 894 |
| BciT130I | CCWGG | 3 cut(s) | 106, 570, 652 |
| BclI | TGATCA | 1 cut(s) | 12 |
| BcnI | CCSGG | 2 cut(s) | 69, 124 |
| BcoDI | GTCTC | 3 cut(s) | 359, 670, 1275 |
| BfoI | RGCGCY | 1 cut(s) | 38 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 388 |
| BisI | GCNGC | 3 cut(s) | 264, 640, 774 |
| BlsI | GCNGC | 3 cut(s) | 265, 641, 775 |
| Bme1390I | CCNGG | 5 cut(s) | 69, 106, 124, 570, 652 |
| Bme18I | GGWCC | 3 cut(s) | 79, 165, 1244 |
| BmgBI | CACGTC | 1 cut(s) | 1076 |
| BmgT120I | GGNCC | 6 cut(s) | 70, 71, 79, 165, 415, 1244 |
| BmiI | GGNNCC | 5 cut(s) | 72, 80, 166, 240, 1245 |
| BmrFI | CCNGG | 5 cut(s) | 69, 106, 124, 570, 652 |
| BmrI | ACTGGG | 1 cut(s) | 1096 |
| BmsI | GCATC | 1 cut(s) | 929 |
| BmuI | ACTGGG | 1 cut(s) | 1096 |
| BpmI | CTGGAG | 1 cut(s) | 1071 |
| Bpu10I | CCTNAGC | 1 cut(s) | 111 |
| Bpu14I | TTCGAA | 1 cut(s) | 1122 |
| BpuEI | CTTGAG | 1 cut(s) | 310 |
| BpuMI | CCSGG | 2 cut(s) | 69, 124 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaI | GGTCTC | 1 cut(s) | 670 |
| BsaJI | CCNNGG | 5 cut(s) | 74, 105, 123, 386, 910 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 727, 728, 891 |
| Bse118I | RCCGGY | 1 cut(s) | 81 |
| Bse1I | ACTGG | 4 cut(s) | 418, 1010, 1102, 1117 |
| BseBI | CCWGG | 3 cut(s) | 106, 570, 652 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 5 cut(s) | 74, 105, 123, 386, 910 |
| BseGI | GGATG | 2 cut(s) | 343, 361 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 727, 728, 891 |
| BseMII | CTCAG | 5 cut(s) | 125, 438, 647, 744, 843 |
| BseNI | ACTGG | 4 cut(s) | 418, 1010, 1102, 1117 |
| BseRI | GAGGAG | 4 cut(s) | 143, 356, 770, 922 |
| BseSI | GKGCMC | 1 cut(s) | 74 |
| BseXI | GCAGC | 3 cut(s) | 250, 651, 760 |
| BseYI | CCCAGC | 2 cut(s) | 360, 1240 |
| BsgI | GTGCAG | 2 cut(s) | 234, 249 |
| BshFI | GGCC | 5 cut(s) | 72, 382, 417, 439, 909 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiSI | CCGG | 3 cut(s) | 68, 82, 123 |
| BslFI | GGGAC | 2 cut(s) | 92, 236 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 727, 728, 891 |
| BsmAI | GTCTC | 3 cut(s) | 359, 670, 1275 |
| BsmFI | GGGAC | 2 cut(s) | 92, 236 |
| BsmI | GAATGC | 2 cut(s) | 776, 843 |
| BsnI | GGCC | 5 cut(s) | 72, 382, 417, 439, 909 |
| Bso31I | GGTCTC | 1 cut(s) | 670 |
| Bsp119I | TTCGAA | 1 cut(s) | 1122 |
| Bsp120I | GGGCCC | 1 cut(s) | 70 |
| Bsp1286I | GDGCHC | 3 cut(s) | 74, 112, 1175 |
| Bsp1407I | TGTACA | 1 cut(s) | 1194 |
| Bsp143I | GATC | 9 cut(s) | 12, 24, 64, 98, 151, 514, 898, 1113, 1292 |
| BspANI | GGCC | 5 cut(s) | 72, 382, 417, 439, 909 |
| BspCNI | CTCAG | 5 cut(s) | 124, 439, 648, 745, 844 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspLI | GGNNCC | 5 cut(s) | 72, 80, 166, 240, 1245 |
| BspPI | GGATC | 4 cut(s) | 59, 93, 1108, 1300 |
| BspQI | GCTCTTC | 1 cut(s) | 498 |
| BspT104I | TTCGAA | 1 cut(s) | 1122 |
| BspTNI | GGTCTC | 1 cut(s) | 670 |
| BsrFI | RCCGGY | 1 cut(s) | 81 |
| BsrGI | TGTACA | 1 cut(s) | 1194 |
| BsrI | ACTGG | 4 cut(s) | 418, 1010, 1102, 1117 |
| BssAI | RCCGGY | 1 cut(s) | 81 |
| BssECI | CCNNGG | 5 cut(s) | 74, 105, 123, 386, 910 |
| BssMI | GATC | 9 cut(s) | 12, 24, 64, 98, 151, 514, 898, 1113, 1292 |
| BssT1I | CCWWGG | 1 cut(s) | 386 |
| Bst2UI | CCWGG | 3 cut(s) | 106, 570, 652 |
| Bst4CI | ACNGT | 6 cut(s) | 93, 149, 370, 560, 593, 1133 |
| Bst6I | CTCTTC | 2 cut(s) | 498, 1033 |
| BstAUI | TGTACA | 1 cut(s) | 1194 |
| BstBI | TTCGAA | 1 cut(s) | 1122 |
| BstC8I | GCNNGC | 3 cut(s) | 213, 529, 771 |
| BstDEI | CTNAG | 5 cut(s) | 111, 447, 656, 753, 852 |
| BstDSI | CCRYGG | 2 cut(s) | 74, 910 |
| BstF5I | GGATG | 2 cut(s) | 343, 361 |
| BstH2I | RGCGCY | 1 cut(s) | 38 |
| BstHHI | GCGC | 1 cut(s) | 37 |
| BstKTI | GATC | 9 cut(s) | 15, 27, 67, 101, 154, 517, 901, 1116, 1295 |
| BstMAI | GTCTC | 3 cut(s) | 359, 670, 1275 |
| BstMBI | GATC | 9 cut(s) | 12, 24, 64, 98, 151, 514, 898, 1113, 1292 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 388 |
| BstNI | CCWGG | 3 cut(s) | 106, 570, 652 |
| BstSCI | CCNGG | 5 cut(s) | 67, 104, 122, 568, 650 |
| BstSLI | GKGCMC | 1 cut(s) | 74 |
| BstV1I | GCAGC | 3 cut(s) | 250, 651, 760 |
| BstX2I | RGATCY | 3 cut(s) | 64, 98, 1292 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 425 |
| BstYI | RGATCY | 3 cut(s) | 64, 98, 1292 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 5 cut(s) | 72, 382, 417, 439, 909 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 2 cut(s) | 74, 910 |
| BtrI | CACGTC | 1 cut(s) | 1076 |
| BtsCI | GGATG | 2 cut(s) | 343, 361 |
| BtsIMutI | CAGTG | 3 cut(s) | 154, 425, 444 |
| Cac8I | GCNNGC | 3 cut(s) | 213, 529, 771 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1094 |
| CfoI | GCGC | 1 cut(s) | 37 |
| Cfr10I | RCCGGY | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 6 cut(s) | 70, 71, 79, 165, 415, 1244 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| Csp6I | GTAC | 1 cut(s) | 1195 |
| CviAII | CATG | 4 cut(s) | 161, 269, 305, 1213 |
| CviQI | GTAC | 1 cut(s) | 1195 |
| DdeI | CTNAG | 5 cut(s) | 111, 447, 656, 753, 852 |
| DpnI | GATC | 9 cut(s) | 14, 26, 66, 100, 153, 516, 900, 1115, 1294 |
| DpnII | GATC | 9 cut(s) | 12, 24, 64, 98, 151, 514, 898, 1113, 1292 |
| DraI | TTTAAA | 2 cut(s) | 555, 871 |
| DraIII | CACNNNGTG | 1 cut(s) | 1203 |
| EaeI | YGGCCR | 1 cut(s) | 907 |
| Eam1104I | CTCTTC | 2 cut(s) | 498, 1033 |
| EarI | CTCTTC | 2 cut(s) | 498, 1033 |
| Eco130I | CCWWGG | 1 cut(s) | 386 |
| Eco147I | AGGCCT | 1 cut(s) | 382 |
| Eco24I | GRGCYC | 3 cut(s) | 74, 112, 1175 |
| Eco31I | GGTCTC | 1 cut(s) | 670 |
| Eco47I | GGWCC | 3 cut(s) | 79, 165, 1244 |
| Eco57I | CTGAAG | 3 cut(s) | 492, 519, 995 |
| EcoRII | CCWGG | 3 cut(s) | 104, 568, 650 |
| EcoT14I | CCWWGG | 1 cut(s) | 386 |
| EcoT38I | GRGCYC | 3 cut(s) | 74, 112, 1175 |
| ErhI | CCWWGG | 1 cut(s) | 386 |
| FaeI | CATG | 4 cut(s) | 164, 272, 308, 1216 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 492, 524 |
| FaqI | GGGAC | 2 cut(s) | 92, 236 |
| FatI | CATG | 4 cut(s) | 160, 268, 304, 1212 |
| FbaI | TGATCA | 1 cut(s) | 12 |
| FblI | GTMKAC | 2 cut(s) | 612, 1072 |
| Fnu4HI | GCNGC | 3 cut(s) | 264, 640, 774 |
| FokI | GGATG | 2 cut(s) | 350, 368 |
| FriOI | GRGCYC | 3 cut(s) | 74, 112, 1175 |
| Fsp4HI | GCNGC | 3 cut(s) | 264, 640, 774 |
| GlaI | GCGC | 1 cut(s) | 36 |
| GluI | GCNGC | 3 cut(s) | 264, 640, 774 |
| GsaI | CCCAGC | 2 cut(s) | 364, 1244 |
| GsuI | CTGGAG | 1 cut(s) | 1071 |
| HaeII | RGCGCY | 1 cut(s) | 38 |
| HaeIII | GGCC | 5 cut(s) | 72, 382, 417, 439, 909 |
| HapII | CCGG | 3 cut(s) | 68, 82, 123 |
| HhaI | GCGC | 1 cut(s) | 37 |
| Hin1II | CATG | 4 cut(s) | 164, 272, 308, 1216 |
| Hin6I | GCGC | 1 cut(s) | 35 |
| HinP1I | GCGC | 1 cut(s) | 35 |
| HincII | GTYRAC | 3 cut(s) | 1045, 1073, 1258 |
| HindII | GTYRAC | 3 cut(s) | 1045, 1073, 1258 |
| HindIII | AAGCTT | 1 cut(s) | 525 |
| HinfI | GANTC | 6 cut(s) | 175, 184, 199, 233, 406, 1091 |
| HpaI | GTTAAC | 1 cut(s) | 1258 |
| HpaII | CCGG | 3 cut(s) | 68, 82, 123 |
| HphI | GGTGA | 1 cut(s) | 989 |
| Hpy166II | GTNNAC | 6 cut(s) | 299, 613, 1045, 1073, 1197, 1258 |
| Hpy188III | TCNNGA | 5 cut(s) | 44, 96, 673, 863, 1088 |
| Hpy8I | GTNNAC | 6 cut(s) | 299, 613, 1045, 1073, 1197, 1258 |
| Hpy99I | CGWCG | 3 cut(s) | 50, 1074, 1077 |
| HpyAV | CCTTC | 6 cut(s) | 252, 328, 450, 504, 601, 629 |
| HpyCH4III | ACNGT | 6 cut(s) | 93, 149, 370, 560, 593, 1133 |
| HpyCH4IV | ACGT | 3 cut(s) | 948, 973, 1075 |
| HpyCH4V | TGCA | 7 cut(s) | 215, 266, 531, 735, 776, 920, 1190 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 388 |
| HpyF3I | CTNAG | 5 cut(s) | 111, 447, 656, 753, 852 |
| HpySE526I | ACGT | 3 cut(s) | 948, 973, 1075 |
| Hsp92II | CATG | 4 cut(s) | 164, 272, 308, 1216 |
| HspAI | GCGC | 1 cut(s) | 35 |
| Ksp22I | TGATCA | 1 cut(s) | 12 |
| KspAI | GTTAAC | 1 cut(s) | 1258 |
| Kzo9I | GATC | 9 cut(s) | 12, 24, 64, 98, 151, 514, 898, 1113, 1292 |
| LguI | GCTCTTC | 1 cut(s) | 498 |
| LmnI | GCTCC | 2 cut(s) | 130, 808 |
| Lsp1109I | GCAGC | 3 cut(s) | 250, 651, 760 |
| LweI | GCATC | 1 cut(s) | 929 |
| MaeII | ACGT | 3 cut(s) | 948, 973, 1075 |
| MaeIII | GTNAC | 2 cut(s) | 41, 519 |
| MalI | GATC | 9 cut(s) | 14, 26, 66, 100, 153, 516, 900, 1115, 1294 |
| MboI | GATC | 9 cut(s) | 12, 24, 64, 98, 151, 514, 898, 1113, 1292 |
| MflI | RGATCY | 3 cut(s) | 64, 98, 1292 |
| MhlI | GDGCHC | 3 cut(s) | 74, 112, 1175 |
| MluCI | AATT | 6 cut(s) | 585, 712, 963, 1178, 1185, 1287 |
| MlyI | GAGTC | 3 cut(s) | 184, 208, 1085 |
| MmeI | TCCRAC | 3 cut(s) | 352, 937, 1144 |
| MseI | TTAA | 5 cut(s) | 554, 810, 870, 966, 1257 |
| MspI | CCGG | 3 cut(s) | 68, 82, 123 |
| MspR9I | CCNGG | 5 cut(s) | 69, 106, 124, 570, 652 |
| Mva1269I | GAATGC | 2 cut(s) | 776, 843 |
| MvaI | CCWGG | 3 cut(s) | 106, 570, 652 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 388 |
| NciI | CCSGG | 2 cut(s) | 69, 124 |
| NdeII | GATC | 9 cut(s) | 12, 24, 64, 98, 151, 514, 898, 1113, 1292 |
| NlaIII | CATG | 4 cut(s) | 164, 272, 308, 1216 |
| NlaIV | GGNNCC | 5 cut(s) | 72, 80, 166, 240, 1245 |
| NmuCI | GTSAC | 2 cut(s) | 41, 519 |
| NspV | TTCGAA | 1 cut(s) | 1122 |
| PceI | AGGCCT | 1 cut(s) | 382 |
| PciSI | GCTCTTC | 1 cut(s) | 498 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PctI | GAATGC | 2 cut(s) | 776, 843 |
| PfeI | GAWTC | 3 cut(s) | 184, 233, 406 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 891 |
| PkrI | GCNGC | 3 cut(s) | 265, 641, 775 |
| PleI | GAGTC | 3 cut(s) | 183, 207, 1085 |
| PpsI | GAGTC | 3 cut(s) | 183, 207, 1085 |
| PsiI | TTATAA | 1 cut(s) | 312 |
| Psp6I | CCWGG | 3 cut(s) | 104, 568, 650 |
| PspFI | CCCAGC | 2 cut(s) | 360, 1240 |
| PspGI | CCWGG | 3 cut(s) | 104, 568, 650 |
| PspN4I | GGNNCC | 5 cut(s) | 72, 80, 166, 240, 1245 |
| PspOMI | GGGCCC | 1 cut(s) | 70 |
| PspPI | GGNCC | 6 cut(s) | 70, 71, 79, 165, 415, 1244 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1094 |
| PsuI | RGATCY | 3 cut(s) | 64, 98, 1292 |
| RsaI | GTAC | 1 cut(s) | 1196 |
| RsaNI | GTAC | 1 cut(s) | 1195 |
| SalI | GTCGAC | 1 cut(s) | 1071 |
| SapI | GCTCTTC | 1 cut(s) | 498 |
| SaqAI | TTAA | 5 cut(s) | 554, 810, 870, 966, 1257 |
| SatI | GCNGC | 3 cut(s) | 264, 640, 774 |
| Sau3AI | GATC | 9 cut(s) | 12, 24, 64, 98, 151, 514, 898, 1113, 1292 |
| Sau96I | GGNCC | 6 cut(s) | 70, 71, 79, 165, 415, 1244 |
| SchI | GAGTC | 3 cut(s) | 184, 208, 1085 |
| ScrFI | CCNGG | 5 cut(s) | 69, 106, 124, 570, 652 |
| SduI | GDGCHC | 3 cut(s) | 74, 112, 1175 |
| SfaNI | GCATC | 1 cut(s) | 929 |
| SfuI | TTCGAA | 1 cut(s) | 1122 |
| SgrDI | CGTCGACG | 1 cut(s) | 1071 |
| SinI | GGWCC | 3 cut(s) | 79, 165, 1244 |
| SmlI | CTYRAG | 1 cut(s) | 325 |
| SmoI | CTYRAG | 1 cut(s) | 325 |
| Sse9I | AATT | 6 cut(s) | 585, 712, 963, 1178, 1185, 1287 |
| SseBI | AGGCCT | 1 cut(s) | 382 |
| StuI | AGGCCT | 1 cut(s) | 382 |
| StyD4I | CCNGG | 5 cut(s) | 67, 104, 122, 568, 650 |
| StyI | CCWWGG | 1 cut(s) | 386 |
| TaaI | ACNGT | 6 cut(s) | 93, 149, 370, 560, 593, 1133 |
| TaiI | ACGT | 3 cut(s) | 951, 976, 1078 |
| TaqI | TCGA | 5 cut(s) | 27, 187, 1072, 1122, 1236 |
| TaqII | GACCGA | 1 cut(s) | 29 |
| TasI | AATT | 6 cut(s) | 585, 712, 963, 1178, 1185, 1287 |
| TatI | WGTACW | 1 cut(s) | 1194 |
| TfiI | GAWTC | 3 cut(s) | 184, 233, 406 |
| Tru1I | TTAA | 5 cut(s) | 554, 810, 870, 966, 1257 |
| Tru9I | TTAA | 5 cut(s) | 554, 810, 870, 966, 1257 |
| TscAI | CASTG | 3 cut(s) | 154, 425, 451 |
| TseFI | GTSAC | 2 cut(s) | 41, 519 |
| TseI | GCWGC | 3 cut(s) | 263, 639, 773 |
| Tsp45I | GTSAC | 2 cut(s) | 41, 519 |
| TspDTI | ATGAA | 5 cut(s) | 75, 294, 597, 769, 1201 |
| TspRI | CASTG | 3 cut(s) | 154, 425, 451 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 891 |
| VpaK11BI | GGWCC | 3 cut(s) | 79, 165, 1244 |
| XapI | RAATTY | 1 cut(s) | 1178 |
| XmiI | GTMKAC | 2 cut(s) | 612, 1072 |