Rh7AG232500

poly(U)-specific endoribonuclease-B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012207
Physical Location & Seq
Reverse (-)
22444153 .. 22447947
3795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG232500.1

Sequence Viewer

Length: 1317 bp
ATGGAGGGTCTGATCAAGGGTCTGATCGACGTGGCACTCGGACACGGCGATAACAAGGAGGAAGACTCCGCTGCCGGCGACCGCGATCAGCGCTCCAGATCCTCTTGGTCGGAGGTGGTGTCTGGGGAGCAGGATAACGACAGTGATCGCCCTCATGGGTACAACCAGAGCCACTGGAATAATAGACAGGAAGAGAGTAACTTGGGGCGTCAAGAGTGGGACAATGTGAGTTCGGAACCTCCAAGGCGACCCCAGAGGAGTACGCATGAGAGATATGAGAACAATGAAGATGGTGGGCCAATTGGTTATAAACAAAACTACTCCAGCAGAAAGGAGGAAGGCAAAGAAGGAAATAATGATGGTTGGGAGACTGTCGGAAAGAAGCCTCCAAGGCAATCACACAAGGTTCAGAAGGACCGGTGGCAGGGATATAAACAGCCTGCCAGTGAGCAACAATACTCTGATGAGGTTGAAGGAGGTGCTAGCATAGAACCTTCAGAAGACGAGCTTGCTGATCTGTCACAAGCTTGCAATAGATTCTGGGAACTTGATTCAAACCATTTAGTGCCTGGAAAGGACTATGAAATTGACTGTGGTGAAGGGAAGAAGGTTTACCATAAGGGAGATTTAGCAGAAGGAAACTTATTTACCTGGCTGAGTGAAGATGTGTTCAGAAGGCCTACTTTTTCTCGTTTCTGTTCTCTTTTAGATAACTACAACCCAAATGAAGGCAGCAGAGAAGTCATCACATCTGAGGAGAAACAGGAGCAAGCTGCATTCATAGAAGAAATCAGCAGAACTGCTCCCATTAAATATCTGCACAGATATCTCTCACGCAAGGGCATGGTATCTGAGAACTATCAAGAGTTTAAAAGAACATTGACTGCTCTTTGGTTTGATCTTTATGGACGTGGTGGCACTTCTGGTTGTTCCTCTGCTTTTGAACATGTTTTTGTGGGAGAAATTAAGCAGCGTGGTGAAGAAGAGGTTTCTGGCTTCCACAATTGGATTCAGTTCTACCTTGAAGAAGCAAAAGGAACGGTTAACTATCAAGGTTATATATTCCCTCGTCGACGTGGGGAAATTCCAGACTCTGAAACCCAGTTGCTTACAATCCAGTTCGAATGGAATGGTGTCCTGAAAGCCGTATCAAGCACTTTAGTTGGGGTGAGCCCAGAATTTGAAGTTGCATTGTATACCTTGTGTTTCTACATGGGTGGAGAGGACAACCACATTCAGCTGGGTCCATACCCAGTTAACATCAAGTGCTATCGCTTTGGAGATAGAATTGGATCTGTGTTTCCAATGGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XendoU

Protein Analysis

438

Amino Acids

50.12

Weight (kDa)

4.99

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XendoU PF09412 172 - 435 3.2e-95 Endoribonuclease XendoU
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17100
fragaria_vesca FvH4_5g20810 FvH4_5g20810
malus_domestica MD04G1057000.v1.1
prunus_persica Prupe.5G050800_v2.0.a1 Prupe.5G050800_v2.0.a1
pyrus_communis pycom04g05070
rosa_chinensis RchiOBHm_Chr7g0207741
rosa_laevigata RLG00000003291
rosa_multiflora Rmu_sc0005968.1_g000004 Rmu_sc0007645.1_g000005
rosa_roxburghii Rroxscaffold_3G00251190
rosa_rugosa Rorug07G0099300 Rorug07G0099400
rosa_samantha Rh7AG232500 Rh7BG227900 Rh7CG246200 Rh7DG238700
rosa_wichuraiana Rw7G019910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccI GTMKAC 2 cut(s) 1072, 1196
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 69, 82
AclWI GGATC 2 cut(s) 93, 1300
AcsI RAATTY 2 cut(s) 1083, 1178
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 2 cut(s) 161, 262
AfeI AGCGCT 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 424, 728
AflIII ACRYGT 1 cut(s) 946
AgeI ACCGGT 1 cut(s) 417
AgsI TTSAA 5 cut(s) 473, 555, 944, 1025, 1184
AjiI CACGTC 3 cut(s) 31, 911, 1076
AjnI CCWGG 2 cut(s) 568, 650
AluBI AGCT 4 cut(s) 508, 527, 773, 1240
AluI AGCT 4 cut(s) 508, 527, 773, 1240
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 2 cut(s) 93, 1300
AlwNI CAGNNNCTG 1 cut(s) 1094
Aor51HI AGCGCT 1 cut(s) 92
AoxI GGCC 2 cut(s) 296, 677
ApeKI GCWGC 4 cut(s) 71, 732, 773, 970
ApoI RAATTY 2 cut(s) 1083, 1178
AsiGI ACCGGT 1 cut(s) 417
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 3 cut(s) 296, 415, 1244
AsuHPI GGTGA 3 cut(s) 608, 989, 1180
AsuII TTCGAA 1 cut(s) 1122
AsuNHI GCTAGC 1 cut(s) 482
AvaII GGWCC 2 cut(s) 415, 1244
BanII GRGCYC 1 cut(s) 1175
BarI GAAGNNNNNNTAC 2 cut(s) 596, 628
BbsI GAAGAC 2 cut(s) 69, 507
BbvI GCAGC 4 cut(s) 58, 744, 760, 982
BccI CCATC 2 cut(s) 284, 353
BceAI ACGGC 2 cut(s) 61, 1130
BciT130I CCWGG 2 cut(s) 570, 652
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 1 cut(s) 483
BfoI RGCGCY 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 391
BisI GCNGC 4 cut(s) 72, 733, 774, 971
BlsI GCNGC 4 cut(s) 73, 734, 775, 972
Bme1390I CCNGG 2 cut(s) 570, 652
Bme18I GGWCC 2 cut(s) 415, 1244
BmgBI CACGTC 3 cut(s) 31, 911, 1076
BmgT120I GGNCC 3 cut(s) 296, 415, 1244
BmiI GGNNCC 2 cut(s) 237, 1245
BmrFI CCNGG 2 cut(s) 570, 652
BmrI ACTGGG 2 cut(s) 1096, 1247
BmtI GCTAGC 1 cut(s) 486
BmuI ACTGGG 2 cut(s) 1096, 1247
BpiI GAAGAC 2 cut(s) 69, 507
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 2 cut(s) 79, 307
Bpu14I TTCGAA 1 cut(s) 1122
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 242, 389
BsaWI WCCGGW 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 728
Bse118I RCCGGY 2 cut(s) 74, 417
Bse1I ACTGG 5 cut(s) 179, 444, 1102, 1117, 1253
BseBI CCWGG 2 cut(s) 570, 652
BseDI CCNNGG 2 cut(s) 242, 389
BseLI CCNNNNNNNGG 2 cut(s) 424, 728
BseMII CTCAG 3 cut(s) 647, 744, 843
BseNI ACTGG 5 cut(s) 179, 444, 1102, 1117, 1253
BseRI GAGGAG 2 cut(s) 271, 770
BseXI GCAGC 4 cut(s) 58, 744, 760, 982
BseYI CCCAGC 1 cut(s) 1240
BsgI GTGCAG 1 cut(s) 803
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 298, 679
BshTI ACCGGT 1 cut(s) 417
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 2 cut(s) 75, 418
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 424, 728
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 776
BsnI GGCC 2 cut(s) 298, 679
Bsp119I TTCGAA 1 cut(s) 1122
Bsp1286I GDGCHC 1 cut(s) 1175
Bsp143I GATC 8 cut(s) 12, 24, 85, 98, 145, 514, 898, 1292
BspACI CCGC 2 cut(s) 69, 82
BspANI GGCC 2 cut(s) 298, 679
BspCNI CTCAG 3 cut(s) 648, 745, 844
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 237, 1245
BspOI GCTAGC 1 cut(s) 486
BspPI GGATC 2 cut(s) 93, 1300
BspT104I TTCGAA 1 cut(s) 1122
BsrFI RCCGGY 2 cut(s) 74, 417
BsrI ACTGG 5 cut(s) 179, 444, 1102, 1117, 1253
BssAI RCCGGY 2 cut(s) 74, 417
BssECI CCNNGG 2 cut(s) 242, 389
BssMI GATC 8 cut(s) 12, 24, 85, 98, 145, 514, 898, 1292
BssNAI GTATAC 1 cut(s) 1197
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 2 cut(s) 242, 389
Bst1107I GTATAC 1 cut(s) 1197
Bst2UI CCWGG 2 cut(s) 570, 652
Bst4CI ACNGT 4 cut(s) 143, 373, 593, 1042
Bst6I CTCTTC 2 cut(s) 186, 978
BstACI GRCGYC 1 cut(s) 208
BstBI TTCGAA 1 cut(s) 1122
BstC8I GCNNGC 6 cut(s) 76, 441, 484, 510, 529, 771
BstDEI CTNAG 3 cut(s) 656, 753, 852
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 8 cut(s) 15, 27, 88, 101, 148, 517, 901, 1295
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 8 cut(s) 12, 24, 85, 98, 145, 514, 898, 1292
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 90, 391
BstNI CCWGG 2 cut(s) 570, 652
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 2 cut(s) 568, 650
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 4 cut(s) 58, 744, 760, 982
BstV2I GAAGAC 2 cut(s) 69, 507
BstX2I RGATCY 2 cut(s) 98, 1292
BstYI RGATCY 2 cut(s) 98, 1292
BstZ17I GTATAC 1 cut(s) 1197
BsuRI GGCC 2 cut(s) 298, 679
BtrI CACGTC 3 cut(s) 31, 911, 1076
BtsIMutI CAGTG 3 cut(s) 148, 172, 451
Cac8I GCNNGC 6 cut(s) 76, 441, 484, 510, 529, 771
CaiI CAGNNNCTG 1 cut(s) 1094
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 2 cut(s) 74, 417
Cfr13I GGNCC 3 cut(s) 296, 415, 1244
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 160, 261
CspAI ACCGGT 1 cut(s) 417
CviAII CATG 5 cut(s) 155, 266, 844, 947, 1213
CviQI GTAC 2 cut(s) 160, 261
DdeI CTNAG 3 cut(s) 656, 753, 852
DpnI GATC 8 cut(s) 14, 26, 87, 100, 147, 516, 900, 1294
DpnII GATC 8 cut(s) 12, 24, 85, 98, 145, 514, 898, 1292
DraI TTTAAA 1 cut(s) 871
Eam1104I CTCTTC 2 cut(s) 186, 978
EarI CTCTTC 2 cut(s) 186, 978
Eco130I CCWWGG 2 cut(s) 242, 389
Eco147I AGGCCT 1 cut(s) 679
Eco24I GRGCYC 1 cut(s) 1175
Eco32I GATATC 1 cut(s) 827
Eco47I GGWCC 2 cut(s) 415, 1244
Eco47III AGCGCT 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 568, 650
EcoRV GATATC 1 cut(s) 827
EcoT14I CCWWGG 2 cut(s) 242, 389
EcoT38I GRGCYC 1 cut(s) 1175
ErhI CCWWGG 2 cut(s) 242, 389
FaeI CATG 5 cut(s) 158, 269, 847, 950, 1216
FalI AAGNNNNNCTT 4 cut(s) 492, 524, 667, 699
FaqI GGGAC 1 cut(s) 233
FatI CATG 5 cut(s) 154, 265, 843, 946, 1212
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 2 cut(s) 1072, 1196
Fnu4HI GCNGC 4 cut(s) 72, 733, 774, 971
FriOI GRGCYC 1 cut(s) 1175
Fsp4HI GCNGC 4 cut(s) 72, 733, 774, 971
FspBI CTAG 1 cut(s) 483
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 72, 733, 774, 971
GsaI CCCAGC 1 cut(s) 1244
GsuI CTGGAG 2 cut(s) 79, 307
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 2 cut(s) 298, 679
HapII CCGG 2 cut(s) 75, 418
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 5 cut(s) 158, 269, 847, 950, 1216
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 3 cut(s) 1045, 1073, 1258
HindII GTYRAC 3 cut(s) 1045, 1073, 1258
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 5 cut(s) 65, 537, 551, 1009, 1091
HpaI GTTAAC 2 cut(s) 1045, 1258
HpaII CCGG 2 cut(s) 75, 418
HphI GGTGA 3 cut(s) 608, 989, 1180
Hpy166II GTNNAC 5 cut(s) 613, 1045, 1073, 1197, 1258
Hpy188III TCNNGA 5 cut(s) 96, 212, 863, 1088, 1138
Hpy8I GTNNAC 5 cut(s) 613, 1045, 1073, 1197, 1258
Hpy99I CGWCG 3 cut(s) 32, 1074, 1077
HpyCH4III ACNGT 4 cut(s) 143, 373, 593, 1042
HpyCH4IV ACGT 3 cut(s) 30, 910, 1075
HpyCH4V TGCA 4 cut(s) 531, 776, 820, 1190
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 391
HpyF3I CTNAG 3 cut(s) 656, 753, 852
HpySE526I ACGT 3 cut(s) 30, 910, 1075
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 5 cut(s) 158, 269, 847, 950, 1216
HspAI GCGC 1 cut(s) 91
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 12
KspAI GTTAAC 2 cut(s) 1045, 1258
Kzo9I GATC 8 cut(s) 12, 24, 85, 98, 145, 514, 898, 1292
LmnI GCTCC 4 cut(s) 98, 127, 766, 808
Lsp1109I GCAGC 4 cut(s) 58, 744, 760, 982
MaeI CTAG 1 cut(s) 483
MaeII ACGT 3 cut(s) 30, 910, 1075
MaeIII GTNAC 2 cut(s) 197, 519
MalI GATC 8 cut(s) 14, 26, 87, 100, 147, 516, 900, 1294
MboI GATC 8 cut(s) 12, 24, 85, 98, 145, 514, 898, 1292
MfeI CAATTG 2 cut(s) 300, 1003
MflI RGATCY 2 cut(s) 98, 1292
MhlI GDGCHC 1 cut(s) 1175
MluCI AATT 7 cut(s) 300, 585, 963, 1003, 1083, 1178, 1287
MlyI GAGTC 2 cut(s) 59, 1085
MmeI TCCRAC 2 cut(s) 90, 355
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 5 cut(s) 810, 870, 966, 1044, 1257
MspA1I CMGCKG 2 cut(s) 71, 1240
MspI CCGG 2 cut(s) 75, 418
MspR9I CCNGG 2 cut(s) 570, 652
MunI CAATTG 2 cut(s) 300, 1003
Mva1269I GAATGC 1 cut(s) 776
MvaI CCWGG 2 cut(s) 570, 652
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 90, 391
NaeI GCCGGC 1 cut(s) 76
NdeII GATC 8 cut(s) 12, 24, 85, 98, 145, 514, 898, 1292
NgoMIV GCCGGC 1 cut(s) 74
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 5 cut(s) 158, 269, 847, 950, 1216
NlaIV GGNNCC 2 cut(s) 237, 1245
NmuCI GTSAC 1 cut(s) 519
NspI RCATGY 1 cut(s) 950
NspV TTCGAA 1 cut(s) 1122
PceI AGGCCT 1 cut(s) 679
PciI ACATGT 1 cut(s) 946
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 776
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 537, 551, 1009
PinAI ACCGGT 1 cut(s) 417
PkrI GCNGC 4 cut(s) 73, 734, 775, 972
PleI GAGTC 2 cut(s) 59, 1085
PpsI GAGTC 2 cut(s) 59, 1085
PscI ACATGT 1 cut(s) 946
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 568, 650
PspFI CCCAGC 1 cut(s) 1240
PspGI CCWGG 2 cut(s) 568, 650
PspN4I GGNNCC 2 cut(s) 237, 1245
PspPI GGNCC 3 cut(s) 296, 415, 1244
PstNI CAGNNNCTG 1 cut(s) 1094
PsuI RGATCY 2 cut(s) 98, 1292
PvuII CAGCTG 1 cut(s) 1240
RsaI GTAC 2 cut(s) 161, 262
RsaNI GTAC 2 cut(s) 160, 261
SalI GTCGAC 1 cut(s) 1071
SaqAI TTAA 5 cut(s) 810, 870, 966, 1044, 1257
SatI GCNGC 4 cut(s) 72, 733, 774, 971
Sau3AI GATC 8 cut(s) 12, 24, 85, 98, 145, 514, 898, 1292
Sau96I GGNCC 3 cut(s) 296, 415, 1244
SchI GAGTC 2 cut(s) 59, 1085
ScrFI CCNGG 2 cut(s) 570, 652
SduI GDGCHC 1 cut(s) 1175
SfuI TTCGAA 1 cut(s) 1122
SgrDI CGTCGACG 1 cut(s) 1071
SinI GGWCC 2 cut(s) 415, 1244
Sse9I AATT 7 cut(s) 300, 585, 963, 1003, 1083, 1178, 1287
SseBI AGGCCT 1 cut(s) 679
SsiI CCGC 2 cut(s) 69, 82
SspMI CTAG 1 cut(s) 483
StuI AGGCCT 1 cut(s) 679
StyD4I CCNGG 2 cut(s) 568, 650
StyI CCWWGG 2 cut(s) 242, 389
TaaI ACNGT 4 cut(s) 143, 373, 593, 1042
TaiI ACGT 3 cut(s) 33, 913, 1078
TaqI TCGA 3 cut(s) 27, 1072, 1122
TasI AATT 7 cut(s) 300, 585, 963, 1003, 1083, 1178, 1287
TfiI GAWTC 3 cut(s) 537, 551, 1009
Tru1I TTAA 5 cut(s) 810, 870, 966, 1044, 1257
Tru9I TTAA 5 cut(s) 810, 870, 966, 1044, 1257
TscAI CASTG 3 cut(s) 148, 179, 451
TseFI GTSAC 1 cut(s) 519
TseI GCWGC 4 cut(s) 71, 732, 773, 970
Tsp45I GTSAC 1 cut(s) 519
TspDTI ATGAA 4 cut(s) 300, 597, 741, 769
TspRI CASTG 3 cut(s) 148, 179, 451
VpaK11BI GGWCC 2 cut(s) 415, 1244
XapI RAATTY 2 cut(s) 1083, 1178
XceI RCATGY 1 cut(s) 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 566
XmiI GTMKAC 2 cut(s) 1072, 1196
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.