AT4G17180

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
9646466 .. 9648323
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17180.1

Sequence Viewer

Length: 1428 bp
ATGGGAAGCGGTGTAGGTGTAGCTCTCTTTGCCCTCTCCCTTCTTCTCGTCTCCCATGAGGTGGAATCTGCAATCGGCGTGAACTGGGGAACGTTGTCATTTCACAAGATGAGACCTTCCACAGTGGTGGATCTCCTCAAAGCAAACAAGATCACCAAGGTGAAGCTTTTCGATGCGAATCCAGATGCGCTTCGAGCGTTAATGGGTACTGGAATCCAAGTAATGATCGGCATTCCTAACGAGATGCTCTCAACTTTCAATTCTGATTTGTTTGTCCAGCAAAATCTCTCTCGCTTCATAGGCAAAAACGGTGCTGATATTAGGTATGTTGCAGTAGGGAATGAGCCGTTTCTGACTGGTTACGGTGGTCAGTTTCAGAACTATGTAGTCCCAACTATGGTTAACCTGCAACAATCTTTGGTTAGAGCAAATCTAGCTAGCTATGTGAAGTTGGTGGTTCCTTGCAACGCAGATGCGTATCAGTCTAATGTTCCCTCTCAGGGGATGTTCCGGCCTGAGCTTACACAGATTATGACTCAATTGGTTTCGTTTCTCAACTCCAATGGCTCTCCTTTTGTGGTTAATATCTATCCTTTCCTTAGTCTCTATGGGAACTCGGATTTTCCACAAGACTATGCCTTTTTTGAGGGGAGTAGTCATCCGGTTCCGGATGGGCCTAACACTTACTATAATGCATTTGATGGGAACTTTGACACTCTTGTTGCTGCTCTCACCAAGCTTGGATATGGTCAAATGCCTATAGTTATTGGTGAGATTGGTTGGCCTACAGATGGAGCAGTTGGTGCTAATCTCACAGCAGCCCGGGTTTTTAATCAAGGGCTCATTAGCCATGTGTTGAGCAACAAAGGAACACCGCTCAGGCCTGGATCTCCTCCTGCGGATGTATATCTTTTCGGTTTGCTTGACGAAGGAGCGAAAAGCACACTGCCTGGTAACTTTGAGAGGCATTGGGGAATCTTCTCTTTCGATGGACAGGCCAAGTATCGTCTCAACTTAGGACTAGGCAACAGAGGACTCAAGAATGCAAAAAATGTGCAGTACCTTCCTTCAAGGTGGTGTGTGGCTCACCCATCAAGAGACATGACCCAAGTTGGTGACCACCTCAGGCTTGCTTGCAGTGAAGCAGATTGCACAACGCTCAACGACGGGGGCTCGTGCAGCCAGCTTGGTGAAAAAGATAATATCTCATACGCTTTCAACAGTTACTATCAGATGCAGATGCAACATGAAAAGAGCTGTGACTTTGATGGACTTGGCATGGTCACCTTCCTAGATCCTTCAGTTGGTGACTGTCGATTTCTTGTGGGTGTTACTGATATAGGCTTATCGTCAAGTACTGAGCCAATGGCAAGGTGGTCTATCTACCACATTTGCATTGGACTATTGATCTGGACTCTCACAATGTAG

Protein Analysis

475

Amino Acids

51.81

Weight (kDa)

5.71

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 338 8.9e-60 Glycosyl hydrolases family 17
X8 PF07983 359 - 427 3.4e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17180
fragaria_vesca FvH4_3g00190
malus_domestica MD10G1341100.v1.1
prunus_persica Prupe.4G002100_v2.0.a1
pyrus_communis pycom05g32970 pycom10g29070
rosa_chinensis RchiOBHm_Chr5g0000251
rosa_laevigata RLG00000030853
rosa_multiflora Rmu_ssc0000379.1_g000001
rosa_roxburghii Rroxscaffold_1G00075850
rosa_rugosa Rorug04G0382800
rosa_samantha Rh5AG001800 Rh5BG003200 Rh5CG002100 Rh5DG002100
rosa_wichuraiana Rw5G000230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 877
AccIII TCCGGA 1 cut(s) 667
AciI CCGC 3 cut(s) 9, 875, 899
AclI AACGTT 1 cut(s) 92
AclWI GGATC 3 cut(s) 138, 895, 1289
AcuI CTGAAG 1 cut(s) 1284
AfaI GTAC 3 cut(s) 208, 1061, 1357
AfiI CCNNNNNNNGG 6 cut(s) 61, 397, 500, 501, 791, 1304
AgsI TTSAA 3 cut(s) 259, 1071, 1219
AjnI CCWGG 2 cut(s) 883, 949
AleI CACNNNNGTG 2 cut(s) 125, 158
AluBI AGCT 8 cut(s) 23, 166, 437, 441, 520, 739, 1186, 1257
AluI AGCT 8 cut(s) 23, 166, 437, 441, 520, 739, 1186, 1257
Alw26I GTCTC 5 cut(s) 55, 106, 608, 1013, 1092
AlwI GGATC 3 cut(s) 138, 895, 1289
Ama87I CYCGRG 1 cut(s) 822
Aor13HI TCCGGA 1 cut(s) 667
AoxI GGCC 5 cut(s) 512, 674, 782, 881, 996
ApeKI GCWGC 3 cut(s) 725, 818, 1179
Asp700I GAANNNNTTC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 674
AsuC2I CCSGG 2 cut(s) 823, 824
AsuHPI GGTGA 9 cut(s) 145, 172, 724, 782, 1079, 1127, 1202, 1276, 1319
AsuNHI GCTAGC 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 822
AxyI CCTNAGG 1 cut(s) 1124
BanII GRGCYC 2 cut(s) 843, 1175
BauI CACGAG 1 cut(s) 1174
BbvI GCAGC 3 cut(s) 712, 830, 1191
BccI CCATC 6 cut(s) 665, 695, 785, 983, 1099, 1262
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 2 cut(s) 885, 951
BcnI CCSGG 2 cut(s) 823, 824
BcoDI GTCTC 5 cut(s) 55, 106, 608, 1013, 1092
BfaI CTAG 4 cut(s) 434, 438, 1022, 1292
BfmI CTRYAG 2 cut(s) 759, 786
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 3 cut(s) 726, 819, 1180
BlsI GCNGC 3 cut(s) 727, 820, 1181
BmcAI AGTACT 1 cut(s) 1357
Bme1390I CCNGG 4 cut(s) 823, 824, 885, 951
BmeT110I CYCGRG 1 cut(s) 822
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 2 cut(s) 459, 666
BmrFI CCNGG 4 cut(s) 823, 824, 885, 951
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 6 cut(s) 163, 175, 234, 463, 1224, 1230
BmtI GCTAGC 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu10I CCTNAGC 2 cut(s) 516, 878
BpuEI CTTGAG 1 cut(s) 1022
BpuMI CCSGG 2 cut(s) 823, 824
BsaBI GATNNNNATC 3 cut(s) 177, 477, 906
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 156, 822
BsaWI WCCGGW 2 cut(s) 661, 667
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 397, 500, 501, 791, 1304
Bse1I ACTGG 3 cut(s) 89, 214, 361
Bse21I CCTNAGG 1 cut(s) 1124
Bse8I GATNNNNATC 3 cut(s) 177, 477, 906
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 2 cut(s) 885, 951
BseDI CCNNGG 2 cut(s) 156, 822
BseGI GGATG 4 cut(s) 510, 658, 676, 907
BseJI GATNNNNATC 3 cut(s) 177, 477, 906
BseLI CCNNNNNNNGG 6 cut(s) 61, 397, 500, 501, 791, 1304
BseMII CTCAG 5 cut(s) 507, 512, 892, 1138, 1350
BseNI ACTGG 3 cut(s) 89, 214, 361
BseRI GAGGAG 2 cut(s) 125, 882
BseXI GCAGC 3 cut(s) 712, 830, 1191
BsgI GTGCAG 2 cut(s) 1076, 1198
BshFI GGCC 5 cut(s) 514, 676, 784, 883, 998
BsiHKCI CYCGRG 1 cut(s) 822
BsiSI CCGG 4 cut(s) 511, 662, 668, 823
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 6 cut(s) 61, 397, 500, 501, 791, 1304
BsmAI GTCTC 5 cut(s) 55, 106, 608, 1013, 1092
BsmBI CGTCTC 2 cut(s) 55, 1013
BsmFI GGGAC 1 cut(s) 374
BsmI GAATGC 2 cut(s) 231, 1048
BsnI GGCC 5 cut(s) 514, 676, 784, 883, 998
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 822
Bsp1286I GDGCHC 2 cut(s) 843, 1175
Bsp13I TCCGGA 1 cut(s) 667
Bsp143I GATC 6 cut(s) 130, 150, 225, 887, 1294, 1407
BspACI CCGC 3 cut(s) 9, 875, 899
BspANI GGCC 5 cut(s) 514, 676, 784, 883, 998
BspCNI CTCAG 5 cut(s) 508, 511, 891, 1137, 1351
BspEI TCCGGA 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 459, 666
BspMI ACCTGC 1 cut(s) 414
BspOI GCTAGC 1 cut(s) 441
BspPI GGATC 3 cut(s) 138, 895, 1289
BspTNI GGTCTC 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 877
BsrI ACTGG 3 cut(s) 89, 214, 361
BssECI CCNNGG 2 cut(s) 156, 822
BssMI GATC 6 cut(s) 130, 150, 225, 887, 1294, 1407
BssSI CACGAG 1 cut(s) 1174
BssT1I CCWWGG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 1174
Bst2UI CCWGG 2 cut(s) 885, 951
Bst4CI ACNGT 5 cut(s) 124, 311, 365, 1223, 1313
BstAPI GCANNNNNTGC 1 cut(s) 803
BstC8I GCNNGC 4 cut(s) 439, 1131, 1135, 1184
BstDEI CTNAG 7 cut(s) 498, 516, 599, 878, 1015, 1124, 1359
BstEII GGTNACC 2 cut(s) 1115, 1282
BstF5I GGATG 4 cut(s) 510, 658, 676, 907
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 6 cut(s) 133, 153, 228, 890, 1297, 1410
BstMAI GTCTC 5 cut(s) 55, 106, 608, 1013, 1092
BstMBI GATC 6 cut(s) 130, 150, 225, 887, 1294, 1407
BstMWI GCNNNNNNNGC 6 cut(s) 29, 194, 300, 434, 803, 1179
BstNI CCWGG 2 cut(s) 885, 951
BstPI GGTNACC 2 cut(s) 1115, 1282
BstSCI CCNGG 4 cut(s) 821, 822, 883, 949
BstSFI CTRYAG 2 cut(s) 759, 786
BstV1I GCAGC 3 cut(s) 712, 830, 1191
BstX2I RGATCY 3 cut(s) 130, 887, 1294
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 3 cut(s) 130, 887, 1294
Bsu36I CCTNAGG 1 cut(s) 1124
BsuRI GGCC 5 cut(s) 514, 676, 784, 883, 998
BtsCI GGATG 4 cut(s) 510, 658, 676, 907
BtsI GCAGTG 2 cut(s) 944, 1144
BtsIMutI CAGTG 3 cut(s) 129, 944, 1144
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 4 cut(s) 439, 1131, 1135, 1184
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 674
Cfr9I CCCGGG 1 cut(s) 822
Csp6I GTAC 3 cut(s) 207, 1060, 1356
CviAII CATG 5 cut(s) 56, 851, 1102, 1247, 1279
CviQI GTAC 3 cut(s) 207, 1060, 1356
DdeI CTNAG 7 cut(s) 498, 516, 599, 878, 1015, 1124, 1359
DpnI GATC 6 cut(s) 132, 152, 227, 889, 1296, 1409
DpnII GATC 6 cut(s) 130, 150, 225, 887, 1294, 1407
Eco130I CCWWGG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 883
Eco24I GRGCYC 2 cut(s) 843, 1175
Eco31I GGTCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 1284
Eco81I CCTNAGG 1 cut(s) 1124
Eco88I CYCGRG 1 cut(s) 822
Eco91I GGTNACC 2 cut(s) 1115, 1282
EcoO65I GGTNACC 2 cut(s) 1115, 1282
EcoRII CCWGG 2 cut(s) 883, 949
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 697
EcoT38I GRGCYC 2 cut(s) 843, 1175
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 55, 1013
FaeI CATG 5 cut(s) 59, 854, 1105, 1250, 1282
FaqI GGGAC 1 cut(s) 374
FatI CATG 5 cut(s) 55, 850, 1101, 1246, 1278
Fnu4HI GCNGC 3 cut(s) 726, 819, 1180
FokI GGATG 4 cut(s) 517, 645, 683, 914
FriOI GRGCYC 2 cut(s) 843, 1175
Fsp4HI GCNGC 3 cut(s) 726, 819, 1180
FspBI CTAG 4 cut(s) 434, 438, 1022, 1292
GlaI GCGC 1 cut(s) 189
GluI GCNGC 3 cut(s) 726, 819, 1180
HaeIII GGCC 5 cut(s) 514, 676, 784, 883, 998
HapII CCGG 4 cut(s) 511, 662, 668, 823
HhaI GCGC 1 cut(s) 190
Hin1II CATG 5 cut(s) 59, 854, 1105, 1250, 1282
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 2 cut(s) 164, 737
HinfI GANTC 7 cut(s) 65, 178, 213, 535, 975, 1035, 1414
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 4 cut(s) 511, 662, 668, 823
HphI GGTGA 9 cut(s) 145, 172, 724, 782, 1079, 1127, 1202, 1276, 1319
Hpy166II GTNNAC 2 cut(s) 82, 403
Hpy188I TCNGA 5 cut(s) 265, 354, 378, 619, 1233
Hpy188III TCNNGA 5 cut(s) 182, 668, 1039, 1095, 1411
Hpy8I GTNNAC 2 cut(s) 82, 403
Hpy99I CGWCG 1 cut(s) 1169
HpyAV CCTTC 7 cut(s) 50, 126, 923, 1073, 1077, 1297, 1308
HpyCH4III ACNGT 5 cut(s) 124, 311, 365, 1223, 1313
HpyCH4IV ACGT 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 194, 300, 434, 803, 1179
HpyF3I CTNAG 7 cut(s) 498, 516, 599, 878, 1015, 1124, 1359
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 5 cut(s) 59, 854, 1105, 1250, 1282
HspAI GCGC 1 cut(s) 188
Kpn2I TCCGGA 1 cut(s) 667
KspAI GTTAAC 1 cut(s) 403
Kzo9I GATC 6 cut(s) 130, 150, 225, 887, 1294, 1407
LmnI GCTCC 2 cut(s) 794, 932
Lsp1109I GCAGC 3 cut(s) 712, 830, 1191
LweI GCATC 6 cut(s) 163, 175, 234, 463, 1224, 1230
MaeI CTAG 4 cut(s) 434, 438, 1022, 1292
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 8 cut(s) 359, 953, 1115, 1223, 1259, 1282, 1307, 1330
MalI GATC 6 cut(s) 132, 152, 227, 889, 1296, 1409
MbiI CCGCTC 1 cut(s) 877
MboI GATC 6 cut(s) 130, 150, 225, 887, 1294, 1407
MboII GAAGA 2 cut(s) 35, 970
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 3 cut(s) 130, 887, 1294
MhlI GDGCHC 2 cut(s) 843, 1175
MluCI AATT 2 cut(s) 259, 539
MlyI GAGTC 3 cut(s) 529, 1029, 1408
MnlI CCTC 9 cut(s) 44, 52, 146, 505, 640, 903, 957, 1025, 1133
Mph1103I ATGCAT 1 cut(s) 697
MroI TCCGGA 1 cut(s) 667
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 4 cut(s) 200, 402, 582, 831
MslI CAYNNNNRTG 2 cut(s) 125, 158
MspI CCGG 4 cut(s) 511, 662, 668, 823
MspR9I CCNGG 4 cut(s) 823, 824, 885, 951
MunI CAATTG 1 cut(s) 539
Mva1269I GAATGC 2 cut(s) 231, 1048
MvaI CCWGG 2 cut(s) 885, 951
MwoI GCNNNNNNNGC 6 cut(s) 29, 194, 300, 434, 803, 1179
NciI CCSGG 2 cut(s) 823, 824
NdeII GATC 6 cut(s) 130, 150, 225, 887, 1294, 1407
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 5 cut(s) 59, 854, 1105, 1250, 1282
NlaIV GGNNCC 2 cut(s) 459, 666
NmuCI GTSAC 4 cut(s) 1115, 1259, 1282, 1307
NsiI ATGCAT 1 cut(s) 697
OliI CACNNNNGTG 2 cut(s) 125, 158
PceI AGGCCT 1 cut(s) 883
PctI GAATGC 2 cut(s) 231, 1048
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 4 cut(s) 65, 178, 213, 975
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 3 cut(s) 727, 820, 1181
PleI GAGTC 3 cut(s) 529, 1029, 1408
PpsI GAGTC 3 cut(s) 529, 1029, 1408
Psp1406I AACGTT 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 883, 949
PspEI GGTNACC 2 cut(s) 1115, 1282
PspGI CCWGG 2 cut(s) 883, 949
PspN4I GGNNCC 2 cut(s) 459, 666
PspPI GGNCC 1 cut(s) 674
PsuI RGATCY 3 cut(s) 130, 887, 1294
RsaI GTAC 3 cut(s) 208, 1061, 1357
RsaNI GTAC 3 cut(s) 207, 1060, 1356
RseI CAYNNNNRTG 2 cut(s) 125, 158
SaqAI TTAA 4 cut(s) 200, 402, 582, 831
SatI GCNGC 3 cut(s) 726, 819, 1180
Sau3AI GATC 6 cut(s) 130, 150, 225, 887, 1294, 1407
Sau96I GGNCC 1 cut(s) 674
ScaI AGTACT 1 cut(s) 1357
SchI GAGTC 3 cut(s) 529, 1029, 1408
ScrFI CCNGG 4 cut(s) 823, 824, 885, 951
SduI GDGCHC 2 cut(s) 843, 1175
SfaNI GCATC 6 cut(s) 163, 175, 234, 463, 1224, 1230
SfcI CTRYAG 2 cut(s) 759, 786
SmaI CCCGGG 1 cut(s) 824
SmiMI CAYNNNNRTG 2 cut(s) 125, 158
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
Sse9I AATT 2 cut(s) 259, 539
SseBI AGGCCT 1 cut(s) 883
SsiI CCGC 3 cut(s) 9, 875, 899
SspMI CTAG 4 cut(s) 434, 438, 1022, 1292
StuI AGGCCT 1 cut(s) 883
StyD4I CCNGG 4 cut(s) 821, 822, 883, 949
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 5 cut(s) 124, 311, 365, 1223, 1313
TaiI ACGT 1 cut(s) 95
TaqI TCGA 4 cut(s) 171, 193, 987, 1315
TasI AATT 2 cut(s) 259, 539
TatI WGTACW 1 cut(s) 1355
TfiI GAWTC 4 cut(s) 65, 178, 213, 975
Tru1I TTAA 4 cut(s) 200, 402, 582, 831
Tru9I TTAA 4 cut(s) 200, 402, 582, 831
TscAI CASTG 3 cut(s) 129, 951, 1144
TseFI GTSAC 4 cut(s) 1115, 1259, 1282, 1307
TseI GCWGC 3 cut(s) 725, 818, 1179
Tsp45I GTSAC 4 cut(s) 1115, 1259, 1282, 1307
TspDTI ATGAA 2 cut(s) 286, 1263
TspMI CCCGGG 1 cut(s) 822
TspRI CASTG 3 cut(s) 129, 951, 1144
Van91I CCANNNNNTGG 1 cut(s) 61
XcmI CCANNNNNNNNNTGG 2 cut(s) 1371, 1394
XmaI CCCGGG 1 cut(s) 822
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 4 cut(s) 434, 438, 1022, 1292
ZrmI AGTACT 1 cut(s) 1357
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.