Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015129

Physical Location & Seq

Genomic Coordinates Forward (+)

55366200 .. 55366487

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0382800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATCCAAACTCATTTAGTGGATGCAAACCCAAGGAGGGACAAGCCTAGGTATTGTTCAAAGGTGGTCGGTGCTGCCGGGGATGATGGACGGATCATGATGGCGTTGTGGCTAGTAGTTGTTGCTTCCAGGCGGGTGGTTGATCGTGGTGCAGGTGCCATGGCTGACGACAGGGAAGCTAGGGCCTGGACTTCTGGGCTGGTTTCCTATGTGATTGGGCTTGGGCCATGGGCTTATGATGTTGGGCCTGGGCTCGATGCTGATGGGTTGAGGTTCTCCCCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

95

Amino Acids

10.26

Weight (kDa)

7.92

Isoelectric Point (pI)

18.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17180
fragaria_vesca	FvH4_3g00190
malus_domestica	MD10G1341100.v1.1
prunus_persica	Prupe.4G002100_v2.0.a1
pyrus_communis	pycom05g32970 pycom10g29070
rosa_chinensis	RchiOBHm_Chr5g0000251
rosa_laevigata	RLG00000030853
rosa_multiflora	Rmu_ssc0000379.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075850
rosa_rugosa	Rorug04G0382800
rosa_samantha	Rh5AG001800 Rh5BG003200 Rh5CG002100 Rh5DG002100
rosa_wichuraiana	Rw5G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	3 cut(s)	128, 185, 247
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	3 cut(s)	183, 224, 245
ApeKI	GCWGC	1 cut(s)	74
AspA2I	CCTAGG	1 cut(s)	47
AspS9I	GGNCC	3 cut(s)	183, 224, 245
AsuC2I	CCSGG	1 cut(s)	79
AvrII	CCTAGG	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	3 cut(s)	80, 94, 257
BciT130I	CCWGG	3 cut(s)	130, 187, 249
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	4 cut(s)	48, 113, 180, 286
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	75
BlnI	CCTAGG	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	4 cut(s)	79, 130, 187, 249
BmgT120I	GGNCC	3 cut(s)	183, 224, 245
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	4 cut(s)	79, 130, 187, 249
BmsI	GCATC	2 cut(s)	13, 247
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	6 cut(s)	32, 47, 78, 159, 227, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseBI	CCWGG	3 cut(s)	130, 187, 249
BseDI	CCNNGG	6 cut(s)	32, 47, 78, 159, 227, 248
BseGI	GGATG	2 cut(s)	28, 88
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	185, 226, 247
BshNI	GGYRCC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	3 cut(s)	185, 226, 247
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	3, 93, 142
Bsp19I	CCATGG	2 cut(s)	159, 227
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	3 cut(s)	185, 226, 247
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	155
BssECI	CCNNGG	6 cut(s)	32, 47, 78, 159, 227, 248
BssMI	GATC	3 cut(s)	3, 93, 142
BssT1I	CCWWGG	4 cut(s)	32, 47, 159, 227
Bst2UI	CCWGG	3 cut(s)	130, 187, 249
BstDSI	CCRYGG	2 cut(s)	159, 227
BstF5I	GGATG	2 cut(s)	28, 88
BstKTI	GATC	3 cut(s)	6, 96, 145
BstMBI	GATC	3 cut(s)	3, 93, 142
BstNI	CCWGG	3 cut(s)	130, 187, 249
BstSCI	CCNGG	4 cut(s)	77, 128, 185, 247
BstV1I	GCAGC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	185, 226, 247
BtgI	CCRYGG	2 cut(s)	159, 227
BtsCI	GGATG	2 cut(s)	28, 88
BveI	ACCTGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	183, 224, 245
CviAII	CATG	3 cut(s)	97, 160, 228
DpnI	GATC	3 cut(s)	5, 95, 144
DpnII	GATC	3 cut(s)	3, 93, 142
Eco130I	CCWWGG	4 cut(s)	32, 47, 159, 227
Eco24I	GRGCYC	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	3 cut(s)	128, 185, 247
EcoT14I	CCWWGG	4 cut(s)	32, 47, 159, 227
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	4 cut(s)	32, 47, 159, 227
FaeI	CATG	3 cut(s)	100, 163, 231
FaiI	YATR	5 cut(s)	98, 161, 210, 229, 237
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	96, 159, 227
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	35, 95
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	4 cut(s)	48, 113, 180, 286
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	185, 226, 247
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	3 cut(s)	100, 163, 231
HpaII	CCGG	1 cut(s)	78
Hpy188III	TCNNGA	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	26, 152
Hsp92II	CATG	3 cut(s)	100, 163, 231
Kzo9I	GATC	3 cut(s)	3, 93, 142
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	13, 247
MaeI	CTAG	4 cut(s)	48, 113, 180, 286
MalI	GATC	3 cut(s)	5, 95, 144
MboI	GATC	3 cut(s)	3, 93, 142
MhlI	GDGCHC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	30, 264
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	4 cut(s)	79, 130, 187, 249
MvaI	CCWGG	3 cut(s)	130, 187, 249
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	2 cut(s)	159, 227
NdeII	GATC	3 cut(s)	3, 93, 142
NlaIII	CATG	3 cut(s)	100, 163, 231
NlaIV	GGNNCC	1 cut(s)	157
PagI	TCATGA	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	3 cut(s)	128, 185, 247
PspGI	CCWGG	3 cut(s)	128, 185, 247
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	3 cut(s)	183, 224, 245
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	3, 93, 142
Sau96I	GGNCC	3 cut(s)	183, 224, 245
ScrFI	CCNGG	4 cut(s)	79, 130, 187, 249
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	5 cut(s)	53, 66, 157, 181, 275
SfaNI	GCATC	2 cut(s)	13, 247
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	4 cut(s)	48, 113, 180, 286
StyD4I	CCNGG	4 cut(s)	77, 128, 185, 247
StyI	CCWWGG	4 cut(s)	32, 47, 159, 227
TaqI	TCGA	1 cut(s)	255
TseI	GCWGC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	106
XmaJI	CCTAGG	1 cut(s)	47
XspI	CTAG	4 cut(s)	48, 113, 180, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.