Rmu_ssc0000379.1_g000001

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000379.1
Physical Location & Seq
Forward (+)
1 .. 2732
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000379.1_g000001.1.cds

Sequence Viewer

Length: 1418 bp
tgatttgctggttggcagctccaaggggggcagaagcaggcataggtgtgaactgggggaccttgtcattccacaagctcaagccttccactgtggtggatctcttgaaagacaacaagatatccaaggtgaagcttttcgagtcagacccagattgccttgaggctctcaagggctctgggattcaggtcatgcttggaatccccaatgagatgttggccttcttgagctcttccactgatgcctctgatttgtgggttcgccgcaatgtctctagatacgtcgttaaaaatggcgtcgatataaggtatgttgcagtcggaaatgagccattccttacaagttactcgggtcaatttcagccttatgtcatgcctgcattgctgaatctacaacagtccttggctaaagtgaaccttgcaagttatgtgaagttagtggtaccctgtaatgctgatgcctatgaggctgcacttccttctcaaggggcgtttcgacctgaactaactcaacttatgactcagcttgtttcgtttctcaactcaaatggttctccttttgtagtcaatatttacccatttctaagtctctatggaagctcagatttccctcaagaatatgcattcttcgaggggactagccattctgtcacagatggttccgctgtttacaacaatgcatttgatggaaattttgacacactggttgcagccctgagcaaactgggatatggtcagatgcctatagttattggggaggtgggttggccgacagatggagccatcagtgcaaatctcactgctgcaatgacattcaaccaaggcctcataaatcatgttctaagtaataaaggaacccctctaaggccaggtgcccctccggcggatgtatatctttttggtctgcttgatgaaggggcaaagagcacacttccgggaacctttgaaaggcactggggaattttttcctttgatggccaggctaagtatccgttgaaccttggtttaggcagcagacgattgataaatgcaaagaatgttgagtatcttccgtctaggtggtgcgtggcaaacccagcaagggatttgtctgctgtcgaaagccatatgaaacttgcctgtagtgttgcagattgtactacactcagctatgggggatcatgtaacggaattggtgcaaagggaaatatctcatatgctttcaacagttactatcaggttcaaatgcagcatgaacagagctgtgattttgatgggcttgggatggtcactttcctagacccttcaacgggtgagtgcaggtttcttgtgggtgttactacatccagttctacgtccatttctcaactacatcacagtccagccattgtttggatttggattcttattacatggagggtttggatttttgtggagtaa

Protein Analysis

471

Amino Acids

51.22

Weight (kDa)

5.66

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17180
fragaria_vesca FvH4_3g00190
malus_domestica MD10G1341100.v1.1
prunus_persica Prupe.4G002100_v2.0.a1
pyrus_communis pycom05g32970 pycom10g29070
rosa_chinensis RchiOBHm_Chr5g0000251
rosa_laevigata RLG00000030853
rosa_multiflora Rmu_ssc0000379.1_g000001
rosa_roxburghii Rroxscaffold_1G00075850
rosa_rugosa Rorug04G0382800
rosa_samantha Rh5AG001800 Rh5BG003200 Rh5CG002100 Rh5DG002100
rosa_wichuraiana Rw5G000230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1289
Acc65I GGTACC 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 441, 871
AccB7I CCANNNNNTGG 1 cut(s) 1370
AciI CCGC 3 cut(s) 264, 662, 883
AclWI GGATC 2 cut(s) 107, 1164
AcoI YGGCCR 2 cut(s) 766, 975
AcsI RAATTY 2 cut(s) 690, 959
AcyI GRCGYC 1 cut(s) 296
AfaI GTAC 2 cut(s) 443, 1137
AfiI CCNNNNNNNGG 9 cut(s) 484, 775, 863, 882, 947, 1080, 1287, 1288, 1370
AgsI TTSAA 7 cut(s) 108, 816, 946, 996, 1203, 1222, 1286
AjnI CCWGG 2 cut(s) 867, 977
AleI CACNNNNGTG 1 cut(s) 94
AluBI AGCT 8 cut(s) 19, 78, 135, 230, 525, 599, 1148, 1241
AluI AGCT 8 cut(s) 19, 78, 135, 230, 525, 599, 1148, 1241
Alw21I GWGCWC 2 cut(s) 232, 928
Alw26I GTCTC 2 cut(s) 276, 592
AlwI GGATC 2 cut(s) 107, 1164
Ama87I CYCGRG 1 cut(s) 348
AoxI GGCC 5 cut(s) 218, 766, 822, 865, 975
ApeKI GCWGC 6 cut(s) 16, 469, 709, 802, 1010, 1227
ApoI RAATTY 2 cut(s) 690, 959
Asp700I GAANNNNTTC 2 cut(s) 136, 963
Asp718I GGTACC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 2 cut(s) 141, 1303
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 876
BalI TGGCCA 1 cut(s) 977
BanI GGYRCC 2 cut(s) 441, 871
BanII GRGCYC 2 cut(s) 178, 232
Bbv12I GWGCWC 2 cut(s) 232, 928
BbvI GCAGC 6 cut(s) 28, 456, 721, 789, 1022, 1239
BccI CCATC 7 cut(s) 649, 679, 769, 790, 967, 1246, 1257
BciT130I CCWGG 2 cut(s) 869, 979
BciVI GTATCC 1 cut(s) 998
BcnI CCSGG 1 cut(s) 935
BcoDI GTCTC 2 cut(s) 276, 592
BfaI CTAG 4 cut(s) 275, 638, 1055, 1276
BfmI CTRYAG 2 cut(s) 743, 1119
BfuAI ACCTGC 1 cut(s) 1289
BfuI GTATCC 1 cut(s) 998
BglI GCCNNNNNGGC 2 cut(s) 466, 880
BisI GCNGC 7 cut(s) 17, 264, 470, 710, 803, 1011, 1228
BlsI GCNGC 7 cut(s) 18, 265, 471, 711, 804, 1012, 1229
Bme1390I CCNGG 3 cut(s) 869, 935, 979
Bme18I GGWCC 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 7 cut(s) 60, 443, 660, 780, 855, 873, 939
BmrFI CCNGG 3 cut(s) 869, 935, 979
BmrI ACTGGG 3 cut(s) 63, 733, 963
BmsI GCATC 3 cut(s) 231, 447, 728
BmuI ACTGGG 3 cut(s) 63, 733, 963
Bpu10I CCTNAGC 1 cut(s) 715
BpuEI CTTGAG 6 cut(s) 64, 154, 181, 246, 467, 596
BpuMI CCSGG 1 cut(s) 935
BsaBI GATNNNNATC 1 cut(s) 890
BsaHI GRCGYC 1 cut(s) 296
BsaJI CCNNGG 5 cut(s) 22, 125, 401, 819, 999
Bsc4I CCNNNNNNNGG 9 cut(s) 484, 775, 863, 882, 947, 1080, 1287, 1288, 1370
Bse1I ACTGG 5 cut(s) 58, 707, 728, 958, 1325
Bse3DI GCAATG 3 cut(s) 273, 379, 812
Bse8I GATNNNNATC 1 cut(s) 890
BseBI CCWGG 2 cut(s) 869, 979
BseDI CCNNGG 5 cut(s) 22, 125, 401, 819, 999
BseGI GGATG 3 cut(s) 891, 1268, 1321
BseJI GATNNNNATC 1 cut(s) 890
BseLI CCNNNNNNNGG 9 cut(s) 484, 775, 863, 882, 947, 1080, 1287, 1288, 1370
BseMI GCAATG 3 cut(s) 273, 379, 812
BseMII CTCAG 4 cut(s) 535, 614, 706, 1158
BseNI ACTGG 5 cut(s) 58, 707, 728, 958, 1325
BseSI GKGCMC 1 cut(s) 876
BseXI GCAGC 6 cut(s) 28, 456, 721, 789, 1022, 1239
BseYI CCCAGC 1 cut(s) 1074
BsgI GTGCAG 2 cut(s) 455, 1317
BshFI GGCC 5 cut(s) 220, 768, 824, 867, 977
BshNI GGYRCC 2 cut(s) 441, 871
BsiHKAI GWGCWC 2 cut(s) 232, 928
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 2 cut(s) 880, 934
BslFI GGGAC 2 cut(s) 72, 648
BslI CCNNNNNNNGG 9 cut(s) 484, 775, 863, 882, 947, 1080, 1287, 1288, 1370
BsmAI GTCTC 2 cut(s) 276, 592
BsmFI GGGAC 2 cut(s) 72, 648
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 5 cut(s) 220, 768, 824, 867, 977
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 4 cut(s) 178, 232, 876, 928
Bsp143I GATC 2 cut(s) 99, 1156
BspACI CCGC 3 cut(s) 264, 662, 883
BspANI GGCC 5 cut(s) 220, 768, 824, 867, 977
BspCNI CTCAG 4 cut(s) 534, 613, 707, 1157
BspLI GGNNCC 7 cut(s) 60, 443, 660, 780, 855, 873, 939
BspMI ACCTGC 1 cut(s) 1289
BspPI GGATC 2 cut(s) 107, 1164
BspQI GCTCTTC 1 cut(s) 237
BspT107I GGYRCC 2 cut(s) 441, 871
BsrDI GCAATG 3 cut(s) 273, 379, 812
BsrI ACTGG 5 cut(s) 58, 707, 728, 958, 1325
BssECI CCNNGG 5 cut(s) 22, 125, 401, 819, 999
BssMI GATC 2 cut(s) 99, 1156
BssNI GRCGYC 1 cut(s) 296
BssT1I CCWWGG 5 cut(s) 22, 125, 401, 819, 999
Bst2UI CCWGG 2 cut(s) 869, 979
Bst4CI ACNGT 4 cut(s) 93, 398, 1207, 1357
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 39, 377
BstDEI CTNAG 8 cut(s) 521, 583, 600, 715, 841, 862, 983, 1144
BstENI CCTNNNNNAGG 2 cut(s) 482, 945
BstF5I GGATG 3 cut(s) 891, 1268, 1321
BstKTI GATC 2 cut(s) 102, 1159
BstMAI GTCTC 2 cut(s) 276, 592
BstMBI GATC 2 cut(s) 99, 1156
BstMWI GCNNNNNNNGC 5 cut(s) 381, 466, 787, 880, 1075
BstNI CCWGG 2 cut(s) 869, 979
BstSCI CCNGG 3 cut(s) 867, 933, 977
BstSFI CTRYAG 2 cut(s) 743, 1119
BstSLI GKGCMC 1 cut(s) 876
BstV1I GCAGC 6 cut(s) 28, 456, 721, 789, 1022, 1239
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 1 cut(s) 99
BsuI GTATCC 1 cut(s) 998
BsuRI GGCC 5 cut(s) 220, 768, 824, 867, 977
BtsCI GGATG 3 cut(s) 891, 1268, 1321
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 6 cut(s) 89, 236, 700, 792, 797, 951
BveI ACCTGC 1 cut(s) 1289
Cac8I GCNNGC 2 cut(s) 39, 377
Cfr13I GGNCC 1 cut(s) 59
CseI GACGC 1 cut(s) 285
Csp6I GTAC 2 cut(s) 442, 1136
CviAII CATG 6 cut(s) 192, 372, 835, 1160, 1231, 1391
CviQI GTAC 2 cut(s) 442, 1136
DdeI CTNAG 8 cut(s) 521, 583, 600, 715, 841, 862, 983, 1144
DpnI GATC 2 cut(s) 101, 1158
DpnII GATC 2 cut(s) 99, 1156
EaeI YGGCCR 2 cut(s) 766, 975
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 898
Ecl136II GAGCTC 1 cut(s) 230
Eco130I CCWWGG 5 cut(s) 22, 125, 401, 819, 999
Eco147I AGGCCT 1 cut(s) 824
Eco24I GRGCYC 2 cut(s) 178, 232
Eco32I GATATC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 348
EcoICRI GAGCTC 1 cut(s) 230
EcoNI CCTNNNNNAGG 2 cut(s) 482, 945
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 2 cut(s) 867, 977
EcoRV GATATC 1 cut(s) 122
EcoT14I CCWWGG 5 cut(s) 22, 125, 401, 819, 999
EcoT22I ATGCAT 2 cut(s) 624, 681
EcoT38I GRGCYC 2 cut(s) 178, 232
ErhI CCWWGG 5 cut(s) 22, 125, 401, 819, 999
FaeI CATG 6 cut(s) 195, 375, 838, 1163, 1234, 1394
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 2 cut(s) 72, 648
FatI CATG 6 cut(s) 191, 371, 834, 1159, 1230, 1390
FauNDI CATATG 2 cut(s) 1106, 1194
Fnu4HI GCNGC 7 cut(s) 17, 264, 470, 710, 803, 1011, 1228
FokI GGATG 3 cut(s) 898, 1275, 1308
FriOI GRGCYC 2 cut(s) 178, 232
Fsp4HI GCNGC 7 cut(s) 17, 264, 470, 710, 803, 1011, 1228
FspBI CTAG 4 cut(s) 275, 638, 1055, 1276
GluI GCNGC 7 cut(s) 17, 264, 470, 710, 803, 1011, 1228
GsaI CCCAGC 1 cut(s) 1078
HaeIII GGCC 5 cut(s) 220, 768, 824, 867, 977
HapII CCGG 2 cut(s) 880, 934
HgaI GACGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 6 cut(s) 195, 375, 838, 1163, 1234, 1394
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 6 cut(s) 142, 183, 200, 387, 519, 1380
HpaII CCGG 2 cut(s) 880, 934
HphI GGTGA 2 cut(s) 141, 1303
Hpy166II GTNNAC 3 cut(s) 51, 414, 669
Hpy188I TCNGA 5 cut(s) 147, 249, 322, 603, 737
Hpy188III TCNNGA 4 cut(s) 105, 225, 275, 613
Hpy8I GTNNAC 3 cut(s) 51, 414, 669
Hpy99I CGWCG 2 cut(s) 286, 301
HpyAV CCTTC 5 cut(s) 95, 231, 488, 907, 1292
HpyCH4III ACNGT 4 cut(s) 93, 398, 1207, 1357
HpyCH4IV ACGT 2 cut(s) 281, 1333
HpyF10VI GCNNNNNNNGC 5 cut(s) 381, 466, 787, 880, 1075
HpyF3I CTNAG 8 cut(s) 521, 583, 600, 715, 841, 862, 983, 1144
HpySE526I ACGT 2 cut(s) 281, 1333
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 6 cut(s) 195, 375, 838, 1163, 1234, 1394
KpnI GGTACC 1 cut(s) 445
Kzo9I GATC 2 cut(s) 99, 1156
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 24, 778
Lsp1109I GCAGC 6 cut(s) 28, 456, 721, 789, 1022, 1239
LweI GCATC 3 cut(s) 231, 447, 728
MaeI CTAG 4 cut(s) 275, 638, 1055, 1276
MaeII ACGT 2 cut(s) 281, 1333
MaeIII GTNAC 6 cut(s) 343, 648, 1162, 1207, 1266, 1314
MalI GATC 2 cut(s) 101, 1158
MboI GATC 2 cut(s) 99, 1156
MboII GAAGA 3 cut(s) 224, 618, 1039
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 4 cut(s) 178, 232, 876, 928
MlsI TGGCCA 1 cut(s) 977
MluCI AATT 4 cut(s) 355, 690, 959, 1169
MluNI TGGCCA 1 cut(s) 977
MlyI GAGTC 2 cut(s) 151, 513
MmeI TCCRAC 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 977
Mph1103I ATGCAT 2 cut(s) 624, 681
MroXI GAANNNNTTC 2 cut(s) 136, 963
MscI TGGCCA 1 cut(s) 977
MseI TTAA 1 cut(s) 287
MslI CAYNNNNRTG 2 cut(s) 46, 94
Msp20I TGGCCA 1 cut(s) 977
MspA1I CMGCKG 1 cut(s) 664
MspI CCGG 2 cut(s) 880, 934
MspR9I CCNGG 3 cut(s) 869, 935, 979
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 2 cut(s) 869, 979
MwoI GCNNNNNNNGC 5 cut(s) 381, 466, 787, 880, 1075
NciI CCSGG 1 cut(s) 935
NdeI CATATG 2 cut(s) 1106, 1194
NdeII GATC 2 cut(s) 99, 1156
NlaIII CATG 6 cut(s) 195, 375, 838, 1163, 1234, 1394
NlaIV GGNNCC 7 cut(s) 60, 443, 660, 780, 855, 873, 939
NmuCI GTSAC 2 cut(s) 648, 1266
NsiI ATGCAT 2 cut(s) 624, 681
OliI CACNNNNGTG 1 cut(s) 94
PceI AGGCCT 1 cut(s) 824
PciSI GCTCTTC 1 cut(s) 237
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 2 cut(s) 136, 963
PfeI GAWTC 4 cut(s) 183, 200, 387, 1380
PflFI GACNNNGTC 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 1370
PfoI TCCNGGA 1 cut(s) 933
PkrI GCNGC 7 cut(s) 18, 265, 471, 711, 804, 1012, 1229
PleI GAGTC 2 cut(s) 150, 513
PpsI GAGTC 2 cut(s) 150, 513
PpuMI RGGWCCY 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 867, 977
PspFI CCCAGC 1 cut(s) 1074
PspGI CCWGG 2 cut(s) 867, 977
PspN4I GGNNCC 7 cut(s) 60, 443, 660, 780, 855, 873, 939
PspPI GGNCC 1 cut(s) 59
PspPPI RGGWCCY 1 cut(s) 59
PsuI RGATCY 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 63
RsaI GTAC 2 cut(s) 443, 1137
RsaNI GTAC 2 cut(s) 442, 1136
RseI CAYNNNNRTG 2 cut(s) 46, 94
SacI GAGCTC 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 7 cut(s) 17, 264, 470, 710, 803, 1011, 1228
Sau3AI GATC 2 cut(s) 99, 1156
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 2 cut(s) 151, 513
ScrFI CCNGG 3 cut(s) 869, 935, 979
SduI GDGCHC 4 cut(s) 178, 232, 876, 928
SfaNI GCATC 3 cut(s) 231, 447, 728
SfcI CTRYAG 2 cut(s) 743, 1119
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 2 cut(s) 46, 94
SmlI CTYRAG 6 cut(s) 79, 160, 169, 225, 482, 611
SmoI CTYRAG 6 cut(s) 79, 160, 169, 225, 482, 611
Sse9I AATT 4 cut(s) 355, 690, 959, 1169
SseBI AGGCCT 1 cut(s) 824
SsiI CCGC 3 cut(s) 264, 662, 883
SspI AATATT 1 cut(s) 570
SspMI CTAG 4 cut(s) 275, 638, 1055, 1276
SstI GAGCTC 1 cut(s) 232
StuI AGGCCT 1 cut(s) 824
StyD4I CCNGG 3 cut(s) 867, 933, 977
StyI CCWWGG 5 cut(s) 22, 125, 401, 819, 999
TaaI ACNGT 4 cut(s) 93, 398, 1207, 1357
TaiI ACGT 2 cut(s) 284, 1336
TaqI TCGA 5 cut(s) 140, 299, 495, 629, 1097
TasI AATT 4 cut(s) 355, 690, 959, 1169
TatI WGTACW 1 cut(s) 1135
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 4 cut(s) 183, 200, 387, 1380
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 6 cut(s) 96, 243, 707, 792, 804, 958
TseFI GTSAC 2 cut(s) 648, 1266
TseI GCWGC 6 cut(s) 16, 469, 709, 802, 1010, 1227
Tsp45I GTSAC 2 cut(s) 648, 1266
TspDTI ATGAA 3 cut(s) 926, 1123, 1247
TspGWI ACGGA 3 cut(s) 980, 1040, 1181
TspRI CASTG 6 cut(s) 96, 243, 707, 792, 804, 958
Tth111I GACNNNGTC 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 1370
VpaK11BI GGWCC 1 cut(s) 59
XagI CCTNNNNNAGG 2 cut(s) 482, 945
XapI RAATTY 2 cut(s) 690, 959
XbaI TCTAGA 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 2 cut(s) 213, 1367
XmnI GAANNNNTTC 2 cut(s) 136, 963
XspI CTAG 4 cut(s) 275, 638, 1055, 1276
Zsp2I ATGCAT 2 cut(s) 624, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.