Rw5G000230

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
219561 .. 222434
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G000230.1

Sequence Viewer

Length: 1431 bp
ATGTTAGAAGCAGCAGCAGCAGCAAGGGTAGTTTGCTTAATAGTGATTTGCTGGTTGGCAGCTCCAAGGGGGGCAGAAGCAGGCATAGGTGTGAACTGGGGGACCTTGTCATTCCACAAGCTCAAGCCTTCCACTGTGGTGGATCTCTTGAAAGACAACAAGATATCCAAGGTGAAGCTTTTCGAGTCAGACCCAGATTGCCTTGAGGCTCTCAAGGGCTCTGGGATTCAGGTCATGCTTGGAATCCCCAATGAGATGTTGGCCTTCTTGAGCTCTTCCACTGATGCCTCTGATTTGTGGGTTCGCCGCAATGTCTCTAGATACGTCGTTAAAAATGGCGTCGATATAAGGTATGTTGCGGTCGGAAATGAGCCATTCCTTACAAGTTACTCGGGTCAATTTCAGCCTTATGTCATGCCTGCATTGCTGAATCTACAACAGTCCTTGGCTAAAGTGAACCTTGCAAGTTATGTGAAGTTAGTGGTACCCTGTAATGCTGATGCCTATGAGGCTGCACTTCCTTCTCAAGGGGCGTTTCGACCTGAACTAACTCAACTTATGACTCAGCTTGTTTCGTTTCTCAACTCAAATGGTTCTCCTTTTGTAGTCAATATTTACCCATTTCTAAGTCTCTATGGAAGCTCAGATTTCCCTCAAGAATATGCATTCTTCGAGGGGACTAGCCATTCTGTCACAGATGGTTCCGCTGTTTACAACAATGCATTTGATGGAAATTTTGACACACTGGTTGCAGCCCTGAGCAAACTGGGATATGGTCAGATGCCTATAGTTATTGGGGAGGTGGGTTGGCCGACAGATGGAGCCATCAGTGCAAATCTCACTGCTGCAATGACATTCAACCAAGGCCTCATAAATCATGCCAGGTGCCCTCCGGCGGATGTATATCTTTTTGGTCTGCTTGATGAAGGGGCAAAGAGCACACTTCCGGGAACCTTTGAAAGGCACTGGGGAATTTTTTCCTTTGATGGCCAGGCTAAGTATCCGTTGAACCTTGGTTTAGGCAGCAGACGATTGATAAATGCAAAGAATGTTGAGTATCTTCCGTCTAGGTGGTGCGTGGCAAACCCAGCAAGGGATTTGTCTGCTGTCGAAAGCCATATGAAACTTGCCTGTAGTGTTGCAGATTGTACTACACTCAGCTATGGGGGATCATGTAACGGAATTGGTGCAAAGGGAAATATCTCATATGCTTTCAACAGTTACTATCAGGTTCAAATGCAGCATGAACAGAGCTGTGATTTTGATGGGCTTGGGATGGTCACTTTCCTAGACCCTTCAACGGGTGAGTGCAGGTTTCTTGTGGGTGTTACTACATCCAGTTCTACGTCCATTTCTCAACTACATCACAGTCCAGCCATTGTTTGGATTTGGATTCTTATTACATGGAGGGTTTGGATTTTTGTGGAGTAA

Protein Analysis

476

Amino Acids

51.77

Weight (kDa)

5.54

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 337 3.4e-59 Glycosyl hydrolases family 17
X8 PF07983 358 - 426 4.3e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17180
fragaria_vesca FvH4_3g00190
malus_domestica MD10G1341100.v1.1
prunus_persica Prupe.4G002100_v2.0.a1
pyrus_communis pycom05g32970 pycom10g29070
rosa_chinensis RchiOBHm_Chr5g0000251
rosa_laevigata RLG00000030853
rosa_multiflora Rmu_ssc0000379.1_g000001
rosa_roxburghii Rroxscaffold_1G00075850
rosa_rugosa Rorug04G0382800
rosa_samantha Rh5AG001800 Rh5BG003200 Rh5CG002100 Rh5DG002100
rosa_wichuraiana Rw5G000230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1302
Acc65I GGTACC 1 cut(s) 484
AccB1I GGYRCC 2 cut(s) 484, 885
AccB7I CCANNNNNTGG 1 cut(s) 1383
AciI CCGC 4 cut(s) 307, 359, 705, 896
AclWI GGATC 2 cut(s) 150, 1177
AcoI YGGCCR 2 cut(s) 809, 988
AcsI RAATTY 2 cut(s) 733, 972
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 2 cut(s) 486, 1150
AfiI CCNNNNNNNGG 8 cut(s) 527, 818, 895, 960, 1093, 1300, 1301, 1383
AgsI TTSAA 7 cut(s) 151, 859, 959, 1009, 1216, 1235, 1299
AjnI CCWGG 2 cut(s) 881, 990
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 8 cut(s) 62, 121, 178, 273, 568, 642, 1161, 1254
AluI AGCT 8 cut(s) 62, 121, 178, 273, 568, 642, 1161, 1254
Alw21I GWGCWC 2 cut(s) 275, 941
Alw26I GTCTC 2 cut(s) 319, 635
AlwI GGATC 2 cut(s) 150, 1177
Ama87I CYCGRG 1 cut(s) 391
AoxI GGCC 4 cut(s) 261, 809, 865, 988
ApoI RAATTY 2 cut(s) 733, 972
Asp700I GAANNNNTTC 2 cut(s) 179, 976
Asp718I GGTACC 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 948
AsuHPI GGTGA 2 cut(s) 184, 1316
AvaI CYCGRG 1 cut(s) 391
AvaII GGWCC 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 890
BalI TGGCCA 1 cut(s) 990
BanI GGYRCC 2 cut(s) 484, 885
BanII GRGCYC 2 cut(s) 221, 275
Bbv12I GWGCWC 2 cut(s) 275, 941
BccI CCATC 7 cut(s) 692, 722, 812, 833, 980, 1259, 1270
BciT130I CCWGG 2 cut(s) 883, 992
BciVI GTATCC 1 cut(s) 1011
BcnI CCSGG 1 cut(s) 948
BcoDI GTCTC 2 cut(s) 319, 635
BfaI CTAG 4 cut(s) 318, 681, 1068, 1289
BfmI CTRYAG 2 cut(s) 786, 1132
BfuAI ACCTGC 1 cut(s) 1302
BfuI GTATCC 1 cut(s) 1011
BglI GCCNNNNNGGC 1 cut(s) 509
Bme1390I CCNGG 3 cut(s) 883, 948, 992
Bme18I GGWCC 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 6 cut(s) 103, 486, 703, 823, 887, 952
BmrFI CCNGG 3 cut(s) 883, 948, 992
BmrI ACTGGG 3 cut(s) 106, 776, 976
BmsI GCATC 3 cut(s) 274, 490, 771
BmuI ACTGGG 3 cut(s) 106, 776, 976
Bpu10I CCTNAGC 1 cut(s) 758
BpuEI CTTGAG 6 cut(s) 107, 197, 224, 289, 510, 639
BpuMI CCSGG 1 cut(s) 948
BsaBI GATNNNNATC 1 cut(s) 903
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 5 cut(s) 65, 168, 444, 862, 1012
Bsc4I CCNNNNNNNGG 8 cut(s) 527, 818, 895, 960, 1093, 1300, 1301, 1383
Bse1I ACTGG 5 cut(s) 101, 750, 771, 971, 1338
Bse3DI GCAATG 3 cut(s) 316, 422, 855
Bse8I GATNNNNATC 1 cut(s) 903
BseBI CCWGG 2 cut(s) 883, 992
BseDI CCNNGG 5 cut(s) 65, 168, 444, 862, 1012
BseGI GGATG 3 cut(s) 904, 1281, 1334
BseJI GATNNNNATC 1 cut(s) 903
BseLI CCNNNNNNNGG 8 cut(s) 527, 818, 895, 960, 1093, 1300, 1301, 1383
BseMI GCAATG 3 cut(s) 316, 422, 855
BseMII CTCAG 4 cut(s) 578, 657, 749, 1171
BseNI ACTGG 5 cut(s) 101, 750, 771, 971, 1338
BseSI GKGCMC 1 cut(s) 890
BseYI CCCAGC 1 cut(s) 1087
BsgI GTGCAG 2 cut(s) 498, 1330
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 4 cut(s) 263, 811, 867, 990
BshNI GGYRCC 2 cut(s) 484, 885
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 2 cut(s) 275, 941
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 2 cut(s) 893, 947
BslFI GGGAC 2 cut(s) 115, 691
BslI CCNNNNNNNGG 8 cut(s) 527, 818, 895, 960, 1093, 1300, 1301, 1383
BsmAI GTCTC 2 cut(s) 319, 635
BsmFI GGGAC 2 cut(s) 115, 691
BsmI GAATGC 1 cut(s) 665
BsnI GGCC 4 cut(s) 263, 811, 867, 990
BsoBI CYCGRG 1 cut(s) 391
Bsp1286I GDGCHC 4 cut(s) 221, 275, 890, 941
Bsp143I GATC 2 cut(s) 142, 1169
BspACI CCGC 4 cut(s) 307, 359, 705, 896
BspANI GGCC 4 cut(s) 263, 811, 867, 990
BspCNI CTCAG 4 cut(s) 577, 656, 750, 1170
BspLI GGNNCC 6 cut(s) 103, 486, 703, 823, 887, 952
BspMI ACCTGC 1 cut(s) 1302
BspPI GGATC 2 cut(s) 150, 1177
BspQI GCTCTTC 1 cut(s) 280
BspT107I GGYRCC 2 cut(s) 484, 885
BsrDI GCAATG 3 cut(s) 316, 422, 855
BsrI ACTGG 5 cut(s) 101, 750, 771, 971, 1338
BssECI CCNNGG 5 cut(s) 65, 168, 444, 862, 1012
BssMI GATC 2 cut(s) 142, 1169
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 5 cut(s) 65, 168, 444, 862, 1012
Bst2UI CCWGG 2 cut(s) 883, 992
Bst4CI ACNGT 4 cut(s) 136, 441, 1220, 1370
Bst6I CTCTTC 1 cut(s) 280
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 82, 420
BstDEI CTNAG 6 cut(s) 564, 626, 643, 758, 996, 1157
BstENI CCTNNNNNAGG 2 cut(s) 525, 958
BstF5I GGATG 3 cut(s) 904, 1281, 1334
BstKTI GATC 2 cut(s) 145, 1172
BstMAI GTCTC 2 cut(s) 319, 635
BstMBI GATC 2 cut(s) 142, 1169
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 6 cut(s) 17, 20, 424, 509, 830, 1088
BstNI CCWGG 2 cut(s) 883, 992
BstSCI CCNGG 3 cut(s) 881, 946, 990
BstSFI CTRYAG 2 cut(s) 786, 1132
BstSLI GKGCMC 1 cut(s) 890
BstX2I RGATCY 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 139
BstYI RGATCY 1 cut(s) 142
BsuI GTATCC 1 cut(s) 1011
BsuRI GGCC 4 cut(s) 263, 811, 867, 990
BtsCI GGATG 3 cut(s) 904, 1281, 1334
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 6 cut(s) 132, 279, 743, 835, 840, 964
BveI ACCTGC 1 cut(s) 1302
Cac8I GCNNGC 2 cut(s) 82, 420
Cfr13I GGNCC 1 cut(s) 102
CseI GACGC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 485, 1149
CviAII CATG 6 cut(s) 235, 415, 878, 1173, 1244, 1404
CviQI GTAC 2 cut(s) 485, 1149
DdeI CTNAG 6 cut(s) 564, 626, 643, 758, 996, 1157
DpnI GATC 2 cut(s) 144, 1171
DpnII GATC 2 cut(s) 142, 1169
EaeI YGGCCR 2 cut(s) 809, 988
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
EciI GGCGGA 1 cut(s) 911
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 5 cut(s) 65, 168, 444, 862, 1012
Eco147I AGGCCT 1 cut(s) 867
Eco24I GRGCYC 2 cut(s) 221, 275
Eco32I GATATC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 391
EcoICRI GAGCTC 1 cut(s) 273
EcoNI CCTNNNNNAGG 2 cut(s) 525, 958
EcoO109I RGGNCCY 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 881, 990
EcoRV GATATC 1 cut(s) 165
EcoT14I CCWWGG 5 cut(s) 65, 168, 444, 862, 1012
EcoT22I ATGCAT 2 cut(s) 667, 724
EcoT38I GRGCYC 2 cut(s) 221, 275
ErhI CCWWGG 5 cut(s) 65, 168, 444, 862, 1012
FaeI CATG 6 cut(s) 238, 418, 881, 1176, 1247, 1407
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 2 cut(s) 115, 691
FatI CATG 6 cut(s) 234, 414, 877, 1172, 1243, 1403
FauNDI CATATG 2 cut(s) 1119, 1207
FokI GGATG 3 cut(s) 911, 1288, 1321
FriOI GRGCYC 2 cut(s) 221, 275
FspBI CTAG 4 cut(s) 318, 681, 1068, 1289
GsaI CCCAGC 1 cut(s) 1091
HaeIII GGCC 4 cut(s) 263, 811, 867, 990
HapII CCGG 2 cut(s) 893, 947
HgaI GACGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 6 cut(s) 238, 418, 881, 1176, 1247, 1407
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 6 cut(s) 185, 226, 243, 430, 562, 1393
HpaII CCGG 2 cut(s) 893, 947
HphI GGTGA 2 cut(s) 184, 1316
Hpy166II GTNNAC 3 cut(s) 94, 457, 712
Hpy188I TCNGA 5 cut(s) 190, 292, 365, 646, 780
Hpy188III TCNNGA 4 cut(s) 148, 268, 318, 656
Hpy8I GTNNAC 3 cut(s) 94, 457, 712
Hpy99I CGWCG 2 cut(s) 329, 344
HpyAV CCTTC 5 cut(s) 138, 274, 531, 920, 1305
HpyCH4III ACNGT 4 cut(s) 136, 441, 1220, 1370
HpyCH4IV ACGT 2 cut(s) 324, 1346
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 20, 424, 509, 830, 1088
HpyF3I CTNAG 6 cut(s) 564, 626, 643, 758, 996, 1157
HpySE526I ACGT 2 cut(s) 324, 1346
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 6 cut(s) 238, 418, 881, 1176, 1247, 1407
KpnI GGTACC 1 cut(s) 488
Kzo9I GATC 2 cut(s) 142, 1169
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 2 cut(s) 67, 821
LweI GCATC 3 cut(s) 274, 490, 771
MaeI CTAG 4 cut(s) 318, 681, 1068, 1289
MaeII ACGT 2 cut(s) 324, 1346
MaeIII GTNAC 6 cut(s) 386, 691, 1175, 1220, 1279, 1327
MalI GATC 2 cut(s) 144, 1171
MboI GATC 2 cut(s) 142, 1169
MboII GAAGA 3 cut(s) 267, 661, 1052
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 4 cut(s) 221, 275, 890, 941
MlsI TGGCCA 1 cut(s) 990
MluCI AATT 4 cut(s) 398, 733, 972, 1182
MluNI TGGCCA 1 cut(s) 990
MlyI GAGTC 2 cut(s) 194, 556
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 9 cut(s) 199, 298, 502, 663, 667, 793, 878, 900, 1401
Mox20I TGGCCA 1 cut(s) 990
Mph1103I ATGCAT 2 cut(s) 667, 724
MroXI GAANNNNTTC 2 cut(s) 179, 976
MscI TGGCCA 1 cut(s) 990
MseI TTAA 2 cut(s) 38, 330
MslI CAYNNNNRTG 2 cut(s) 89, 137
Msp20I TGGCCA 1 cut(s) 990
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 2 cut(s) 893, 947
MspR9I CCNGG 3 cut(s) 883, 948, 992
Mva1269I GAATGC 1 cut(s) 665
MvaI CCWGG 2 cut(s) 883, 992
MwoI GCNNNNNNNGC 6 cut(s) 17, 20, 424, 509, 830, 1088
NciI CCSGG 1 cut(s) 948
NdeI CATATG 2 cut(s) 1119, 1207
NdeII GATC 2 cut(s) 142, 1169
NlaIII CATG 6 cut(s) 238, 418, 881, 1176, 1247, 1407
NlaIV GGNNCC 6 cut(s) 103, 486, 703, 823, 887, 952
NmuCI GTSAC 2 cut(s) 691, 1279
NsiI ATGCAT 2 cut(s) 667, 724
OliI CACNNNNGTG 1 cut(s) 137
PceI AGGCCT 1 cut(s) 867
PciSI GCTCTTC 1 cut(s) 280
PctI GAATGC 1 cut(s) 665
PdmI GAANNNNTTC 2 cut(s) 179, 976
PfeI GAWTC 4 cut(s) 226, 243, 430, 1393
PflFI GACNNNGTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 1383
PfoI TCCNGGA 1 cut(s) 946
PleI GAGTC 2 cut(s) 193, 556
PpsI GAGTC 2 cut(s) 193, 556
PpuMI RGGWCCY 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 881, 990
PspFI CCCAGC 1 cut(s) 1087
PspGI CCWGG 2 cut(s) 881, 990
PspN4I GGNNCC 6 cut(s) 103, 486, 703, 823, 887, 952
PspPI GGNCC 1 cut(s) 102
PspPPI RGGWCCY 1 cut(s) 102
PsuI RGATCY 1 cut(s) 142
PsyI GACNNNGTC 1 cut(s) 106
RsaI GTAC 2 cut(s) 486, 1150
RsaNI GTAC 2 cut(s) 485, 1149
RseI CAYNNNNRTG 2 cut(s) 89, 137
SacI GAGCTC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 38, 330
Sau3AI GATC 2 cut(s) 142, 1169
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 2 cut(s) 194, 556
ScrFI CCNGG 3 cut(s) 883, 948, 992
SduI GDGCHC 4 cut(s) 221, 275, 890, 941
SfaNI GCATC 3 cut(s) 274, 490, 771
SfcI CTRYAG 2 cut(s) 786, 1132
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 89, 137
SmlI CTYRAG 6 cut(s) 122, 203, 212, 268, 525, 654
SmoI CTYRAG 6 cut(s) 122, 203, 212, 268, 525, 654
Sse9I AATT 4 cut(s) 398, 733, 972, 1182
SseBI AGGCCT 1 cut(s) 867
SsiI CCGC 4 cut(s) 307, 359, 705, 896
SspI AATATT 1 cut(s) 613
SspMI CTAG 4 cut(s) 318, 681, 1068, 1289
SstI GAGCTC 1 cut(s) 275
StuI AGGCCT 1 cut(s) 867
StyD4I CCNGG 3 cut(s) 881, 946, 990
StyI CCWWGG 5 cut(s) 65, 168, 444, 862, 1012
TaaI ACNGT 4 cut(s) 136, 441, 1220, 1370
TaiI ACGT 2 cut(s) 327, 1349
TaqI TCGA 5 cut(s) 183, 342, 538, 672, 1110
TasI AATT 4 cut(s) 398, 733, 972, 1182
TatI WGTACW 1 cut(s) 1148
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 4 cut(s) 226, 243, 430, 1393
Tru1I TTAA 2 cut(s) 38, 330
Tru9I TTAA 2 cut(s) 38, 330
TscAI CASTG 6 cut(s) 139, 286, 750, 835, 847, 971
TseFI GTSAC 2 cut(s) 691, 1279
Tsp45I GTSAC 2 cut(s) 691, 1279
TspDTI ATGAA 3 cut(s) 939, 1136, 1260
TspGWI ACGGA 3 cut(s) 993, 1053, 1194
TspRI CASTG 6 cut(s) 139, 286, 750, 835, 847, 971
Tth111I GACNNNGTC 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 1383
VpaK11BI GGWCC 1 cut(s) 102
XagI CCTNNNNNAGG 2 cut(s) 525, 958
XapI RAATTY 2 cut(s) 733, 972
XbaI TCTAGA 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 2 cut(s) 256, 1380
XmnI GAANNNNTTC 2 cut(s) 179, 976
XspI CTAG 4 cut(s) 318, 681, 1068, 1289
Zsp2I ATGCAT 2 cut(s) 667, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.