Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013836

Physical Location & Seq

Genomic Coordinates Reverse (-)

9773548 .. 9775676

Gene Structure 2129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGCTCATTGGTGATTCTGGTGTTGGAAAGTCGTGCTTGCTTCTAAGGTTTGCTGATGATTCCTACCTGGATAGCTACATCAGCACCATTGGTGTCGACTTTAAAATCCGAACAGTCGAACAAGATGGAAAGACCATCAAACTCCAGATTTGGGATACGGCAGGCCAGGAACGTTTCAGAACGATTACTAGCAGTTACTACAGAGGAGCTCATGGAATTATTGTGACTTATGATGTAACAGATCTAGAAAGCTTCAACAACGTCAAGCAATGGCTAAATGAAATCGACCGCTATGCAAGTGAGAATGTTAACAAGCTACTGGTTGGGAACAAGTGTGATCTCACATCACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTCGCTGATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAGAATGCTACCAATGTCGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACCAGAATGGCGAGCCAACCTGCAGGAGGATCTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTTAACCAGCAATCAGGCTGCTGCTCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0022414 GO:0030054 GO:0030154 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

202

Amino Acids

22.32

Weight (kDa)

5.27

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 131	1.4e-15	ADP-ribosylation factor family
Ras	PF00071	10 - 170	8.9e-68	Ras family
Roc	PF08477	10 - 124	5.3e-36	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17530 AT5G47200
fragaria_vesca	FvH4_5g20060
malus_domestica	MD06G1049500.v1.1
prunus_persica	Prupe.5G060000_v2.0.a1 Prupe.5G060000_v2.0.a1
pyrus_communis	pycom04g04430
rosa_chinensis	RchiOBHm_Chr7g0204921
rosa_laevigata	RLG00000003421
rosa_multiflora	Rmu_sc0002180.1_g000003 Rmu_sc0021398.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252670
rosa_rugosa	Rorug07G0086400
rosa_samantha	Rh7BG214000 Rh7CG230500 Rh7DG224800
rosa_wichuraiana	Rw7G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	1 cut(s)	322
AclI	AACGTT	1 cut(s)	205
AclWI	GGATC	4 cut(s)	427, 440, 547, 556
AcoI	YGGCCR	1 cut(s)	489
AfiI	CCNNNNNNNGG	3 cut(s)	184, 442, 536
AgsI	TTSAA	2 cut(s)	28, 289
AjnI	CCWGG	2 cut(s)	99, 198
AloI	GAACNNNNNNTCC	2 cut(s)	417, 449
AluBI	AGCT	7 cut(s)	31, 108, 242, 285, 349, 407, 482
AluI	AGCT	7 cut(s)	31, 108, 242, 285, 349, 407, 482
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	4 cut(s)	427, 440, 547, 556
AoxI	GGCC	2 cut(s)	196, 489
ApeKI	GCWGC	3 cut(s)	500, 594, 597
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	487, 581, 584
BccI	CCATC	2 cut(s)	152, 176
BceAI	ACGGC	1 cut(s)	207
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	2 cut(s)	101, 200
BciVI	GTATCC	2 cut(s)	181, 403
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	222, 278
BfmI	CTRYAG	2 cut(s)	232, 531
BfuAI	ACCTGC	1 cut(s)	538
BfuI	GTATCC	2 cut(s)	181, 403
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	3 cut(s)	501, 595, 598
BlsI	GCNGC	3 cut(s)	502, 596, 599
Bme1390I	CCNGG	2 cut(s)	101, 200
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	2 cut(s)	101, 200
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 442, 536
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	2 cut(s)	101, 200
BseDI	CCNNGG	1 cut(s)	565
BseLI	CCNNNNNNNGG	3 cut(s)	184, 442, 536
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	2 cut(s)	252, 592
BseXI	GCAGC	3 cut(s)	487, 581, 584
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	198, 491
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	184, 442, 536
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	198, 491
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	5 cut(s)	274, 370, 432, 539, 561
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	2 cut(s)	198, 491
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	434
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	4 cut(s)	427, 440, 547, 556
BsrDI	GCAATG	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	5 cut(s)	274, 370, 432, 539, 561
Bst2UI	CCWGG	2 cut(s)	101, 200
Bst4CI	ACNGT	2 cut(s)	148, 556
BstC8I	GCNNGC	3 cut(s)	71, 196, 523
BstDEI	CTNAG	5 cut(s)	77, 399, 408, 456, 543
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstKTI	GATC	5 cut(s)	277, 373, 435, 542, 564
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	5 cut(s)	274, 370, 432, 539, 561
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 461, 488, 497
BstNI	CCWGG	2 cut(s)	101, 200
BstSCI	CCNGG	2 cut(s)	99, 198
BstSFI	CTRYAG	2 cut(s)	232, 531
BstV1I	GCAGC	3 cut(s)	487, 581, 584
BstX2I	RGATCY	4 cut(s)	274, 432, 539, 561
BstYI	RGATCY	4 cut(s)	274, 432, 539, 561
BsuI	GTATCC	2 cut(s)	181, 403
BsuRI	GGCC	2 cut(s)	198, 491
BtsIMutI	CAGTG	1 cut(s)	396
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	3 cut(s)	71, 196, 523
Cfr13I	GGNCC	1 cut(s)	556
CviAII	CATG	3 cut(s)	245, 487, 493
DdeI	CTNAG	5 cut(s)	77, 399, 408, 456, 543
DpnI	GATC	5 cut(s)	276, 372, 434, 541, 563
DpnII	GATC	5 cut(s)	274, 370, 432, 539, 561
DraI	TTTAAA	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	556
Eco53kI	GAGCTC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	99, 198
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	3 cut(s)	248, 490, 496
FaiI	YATR	6 cut(s)	15, 246, 264, 327, 488, 494
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	3 cut(s)	244, 486, 492
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	501, 595, 598
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	501, 595, 598
FspBI	CTAG	2 cut(s)	222, 278
GluI	GCNGC	3 cut(s)	501, 595, 598
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	198, 491
Hin1II	CATG	3 cut(s)	248, 490, 496
HincII	GTYRAC	3 cut(s)	130, 343, 580
HindII	GTYRAC	3 cut(s)	130, 343, 580
HindIII	AAGCTT	3 cut(s)	29, 283, 480
HinfI	GANTC	3 cut(s)	4, 47, 92
HpaI	GTTAAC	2 cut(s)	343, 580
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	3 cut(s)	130, 343, 580
Hpy188I	TCNGA	3 cut(s)	143, 212, 566
Hpy188III	TCNNGA	5 cut(s)	8, 178, 278, 508, 559
Hpy8I	GTNNAC	3 cut(s)	130, 343, 580
HpyCH4III	ACNGT	2 cut(s)	148, 556
HpyCH4IV	ACGT	2 cut(s)	205, 294
HpyCH4V	TGCA	3 cut(s)	329, 503, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 461, 488, 497
HpyF3I	CTNAG	5 cut(s)	77, 399, 408, 456, 543
HpySE526I	ACGT	2 cut(s)	205, 294
Hsp92II	CATG	3 cut(s)	248, 490, 496
KspAI	GTTAAC	2 cut(s)	343, 580
Kzo9I	GATC	5 cut(s)	274, 370, 432, 539, 561
LmnI	GCTCC	2 cut(s)	239, 605
Lsp1109I	GCAGC	3 cut(s)	487, 581, 584
MaeI	CTAG	2 cut(s)	222, 278
MaeII	ACGT	2 cut(s)	205, 294
MaeIII	GTNAC	3 cut(s)	227, 256, 268
MalI	GATC	5 cut(s)	276, 372, 434, 541, 563
MboI	GATC	5 cut(s)	274, 370, 432, 539, 561
MboII	GAAGA	1 cut(s)	488
MflI	RGATCY	4 cut(s)	274, 432, 539, 561
MhlI	GDGCHC	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	1 cut(s)	249
MluNI	TGGCCA	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	230, 530, 560
Mox20I	TGGCCA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	4 cut(s)	135, 342, 579, 607
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	101, 200
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	2 cut(s)	101, 200
MwoI	GCNNNNNNNGC	4 cut(s)	114, 461, 488, 497
NdeII	GATC	5 cut(s)	274, 370, 432, 539, 561
NlaIII	CATG	3 cut(s)	248, 490, 496
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	256
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	3 cut(s)	4, 47, 92
PkrI	GCNGC	3 cut(s)	502, 596, 599
Psp124BI	GAGCTC	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	99, 198
PspGI	CCWGG	2 cut(s)	99, 198
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	4 cut(s)	274, 432, 539, 561
RseI	CAYNNNNRTG	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	4 cut(s)	135, 342, 579, 607
SatI	GCNGC	3 cut(s)	501, 595, 598
Sau3AI	GATC	5 cut(s)	274, 370, 432, 539, 561
Sau96I	GGNCC	1 cut(s)	556
SbfI	CCTGCAGG	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	101, 200
SdaI	CCTGCAGG	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	232, 531
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse8387I	CCTGCAGG	1 cut(s)	535
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	322
SspMI	CTAG	2 cut(s)	222, 278
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	2 cut(s)	99, 198
TaaI	ACNGT	2 cut(s)	148, 556
TaiI	ACGT	2 cut(s)	208, 297
TaqI	TCGA	4 cut(s)	129, 150, 318, 474
TasI	AATT	1 cut(s)	249
TfiI	GAWTC	3 cut(s)	4, 47, 92
Tru1I	TTAA	4 cut(s)	135, 342, 579, 607
Tru9I	TTAA	4 cut(s)	135, 342, 579, 607
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	500, 594, 597
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	4 cut(s)	17, 327, 438, 475
TspRI	CASTG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	556
XagI	CCTNNNNNAGG	1 cut(s)	534
XbaI	TCTAGA	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	222, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.