Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013836

Physical Location & Seq

Genomic Coordinates Forward (+)

19166859 .. 19169093

Gene Structure 2235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATCCTGAATATGACTATCTGTTCAAGCTTCTGCTTATTGGTGATTCTGGTGTTGGAAAATCATGCTTGCTTCTAAGATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACCATTGGTGTTGACTTTAAAATTCGCACAGTTGAGCAGGACGGAAAGACCATCAAACTCCAGATCTGGGACACAGCAGGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGAGCTCATGGGATCATTGTCACTTATGATGTCACAGACCTAGAGAGCTTCAACAACGTCAAACAATGGCTGAATGAAATTGACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGGAACAAGAACGATCTCACTTCACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCAGATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAAAATGCAACCAATGTGGAAGAAGCTTTCATGGCTATGACTGCTGCAATTAAGACAAGAATGGCTAGCCAACCAGCTGGAGGTGCCAAGCCACCAACGGTCCAGATCCGTGGACAGCCAGTGAACCAGCAATCAGGCTGTTGTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0022414 GO:0030054 GO:0030154 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

202

Amino Acids

22.31

Weight (kDa)

5.27

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 131	1e-15	ADP-ribosylation factor family
Ras	PF00071	10 - 170	7e-67	Ras family
Roc	PF08477	10 - 124	2.2e-35	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17530 AT5G47200
fragaria_vesca	FvH4_5g20060
malus_domestica	MD06G1049500.v1.1
prunus_persica	Prupe.5G060000_v2.0.a1 Prupe.5G060000_v2.0.a1
pyrus_communis	pycom04g04430
rosa_chinensis	RchiOBHm_Chr7g0204921
rosa_laevigata	RLG00000003421
rosa_multiflora	Rmu_sc0002180.1_g000003 Rmu_sc0021398.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252670
rosa_rugosa	Rorug07G0086400
rosa_samantha	Rh7BG214000 Rh7CG230500 Rh7DG224800
rosa_wichuraiana	Rw7G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AclI	AACGTT	1 cut(s)	205
AclWI	GGATC	4 cut(s)	257, 427, 440, 556
AcsI	RAATTY	1 cut(s)	138
AfiI	CCNNNNNNNGG	3 cut(s)	184, 442, 536
AgsI	TTSAA	2 cut(s)	28, 289
AjnI	CCWGG	1 cut(s)	99
AloI	GAACNNNNNNTCC	2 cut(s)	417, 449
AluBI	AGCT	9 cut(s)	31, 108, 228, 242, 285, 349, 407, 482, 533
AluI	AGCT	9 cut(s)	31, 108, 228, 242, 285, 349, 407, 482, 533
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	4 cut(s)	257, 427, 440, 556
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	225, 500
ApoI	RAATTY	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	1 cut(s)	56
AsuNHI	GCTAGC	2 cut(s)	329, 521
AvaII	GGWCC	1 cut(s)	556
BamHI	GGATCC	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	237, 487
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	101
BciVI	GTATCC	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	4 cut(s)	222, 278, 330, 522
BfmI	CTRYAG	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	403
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	226, 501
BlsI	GCNGC	2 cut(s)	227, 502
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	434, 541
BmrFI	CCNGG	1 cut(s)	101
BmtI	GCTAGC	2 cut(s)	333, 525
BpmI	CTGGAG	2 cut(s)	161, 555
Bpu10I	CCTNAGC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 442, 536
Bse1I	ACTGG	2 cut(s)	357, 575
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	565
BseLI	CCNNNNNNNGG	3 cut(s)	184, 442, 536
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	357, 575
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	237, 487
BshFI	GGCC	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	184, 442, 536
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	5 cut(s)	180, 249, 370, 432, 561
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	434, 541
BspOI	GCTAGC	2 cut(s)	333, 525
BspPI	GGATC	4 cut(s)	257, 427, 440, 556
BspT107I	GGYRCC	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	357, 575
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	5 cut(s)	180, 249, 370, 432, 561
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	148, 323, 556
BstC8I	GCNNGC	4 cut(s)	71, 196, 331, 523
BstDEI	CTNAG	3 cut(s)	77, 399, 408
BstDSI	CCRYGG	1 cut(s)	565
BstKTI	GATC	5 cut(s)	183, 252, 373, 435, 564
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	5 cut(s)	180, 249, 370, 432, 561
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 461, 488, 497, 539
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	237, 487
BstX2I	RGATCY	3 cut(s)	180, 432, 561
BstXI	CCANNNNNNTGG	2 cut(s)	533, 566
BstYI	RGATCY	3 cut(s)	180, 432, 561
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	396, 582
Cac8I	GCNNGC	4 cut(s)	71, 196, 331, 523
Cfr13I	GGNCC	1 cut(s)	556
CspCI	CAANNNNNGTGG	2 cut(s)	453, 488
CviAII	CATG	3 cut(s)	66, 245, 487
DdeI	CTNAG	3 cut(s)	77, 399, 408
DpnI	GATC	5 cut(s)	182, 251, 372, 434, 563
DpnII	GATC	5 cut(s)	180, 249, 370, 432, 561
DraI	TTTAAA	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	556
Eco53kI	GAGCTC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	3 cut(s)	69, 248, 490
FaiI	YATR	7 cut(s)	15, 67, 113, 246, 264, 488, 494
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	65, 244, 486
Fnu4HI	GCNGC	2 cut(s)	226, 501
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	2 cut(s)	226, 501
FspBI	CTAG	4 cut(s)	222, 278, 330, 522
GluI	GCNGC	2 cut(s)	226, 501
GsuI	CTGGAG	2 cut(s)	161, 555
HaeIII	GGCC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	69, 248, 490
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	29, 480
HinfI	GANTC	3 cut(s)	4, 47, 92
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	4 cut(s)	130, 343, 569, 580
Hpy188III	TCNNGA	5 cut(s)	8, 178, 211, 559, 606
Hpy8I	GTNNAC	4 cut(s)	130, 343, 569, 580
HpyCH4III	ACNGT	3 cut(s)	148, 323, 556
HpyCH4IV	ACGT	2 cut(s)	205, 294
HpyCH4V	TGCA	3 cut(s)	419, 464, 503
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 461, 488, 497, 539
HpyF3I	CTNAG	3 cut(s)	77, 399, 408
HpySE526I	ACGT	2 cut(s)	205, 294
Hsp92II	CATG	3 cut(s)	69, 248, 490
Kzo9I	GATC	5 cut(s)	180, 249, 370, 432, 561
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	2 cut(s)	237, 487
MaeI	CTAG	4 cut(s)	222, 278, 330, 522
MaeII	ACGT	2 cut(s)	205, 294
MaeIII	GTNAC	3 cut(s)	256, 268, 323
MalI	GATC	5 cut(s)	182, 251, 372, 434, 563
MboI	GATC	5 cut(s)	180, 249, 370, 432, 561
MboII	GAAGA	2 cut(s)	488, 594
MflI	RGATCY	3 cut(s)	180, 432, 561
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	138, 315, 504
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	230, 530
MseI	TTAA	2 cut(s)	135, 507
MslI	CAYNNNNRTG	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	5 cut(s)	114, 461, 488, 497, 539
NdeII	GATC	5 cut(s)	180, 249, 370, 432, 561
NheI	GCTAGC	2 cut(s)	329, 521
NlaIII	CATG	3 cut(s)	69, 248, 490
NlaIV	GGNNCC	2 cut(s)	434, 541
NmuCI	GTSAC	2 cut(s)	256, 268
PfeI	GAWTC	3 cut(s)	4, 47, 92
PkrI	GCNGC	2 cut(s)	227, 502
Psp124BI	GAGCTC	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	434, 541
PspPI	GGNCC	1 cut(s)	556
PsuI	RGATCY	3 cut(s)	180, 432, 561
PvuII	CAGCTG	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	135, 507
SatI	GCNGC	2 cut(s)	226, 501
Sau3AI	GATC	5 cut(s)	180, 249, 370, 432, 561
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	138, 315, 504
SspMI	CTAG	4 cut(s)	222, 278, 330, 522
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	148, 323, 556
TaiI	ACGT	2 cut(s)	208, 297
TasI	AATT	3 cut(s)	138, 315, 504
TfiI	GAWTC	3 cut(s)	4, 47, 92
Tru1I	TTAA	2 cut(s)	135, 507
Tru9I	TTAA	2 cut(s)	135, 507
TscAI	CASTG	2 cut(s)	403, 582
TseFI	GTSAC	2 cut(s)	256, 268
TseI	GCWGC	2 cut(s)	225, 500
Tsp45I	GTSAC	2 cut(s)	256, 268
TspDTI	ATGAA	4 cut(s)	17, 327, 438, 475
TspGWI	ACGGA	2 cut(s)	174, 554
TspRI	CASTG	2 cut(s)	403, 582
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	1 cut(s)	138
XspI	CTAG	4 cut(s)	222, 278, 330, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.