Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021398.1

Orthogroup ID

OG0013836

Physical Location & Seq

Genomic Coordinates Reverse (-)

1418 .. 2726

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021398.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgtctacttctgcggatgattcgtacttggatagctacatcagcacaattggagttgactttaaaatccgcactgtggagcaggatggaaagactatcaaacttcaaatttgggacacagctggccaagaacgtttcaggacaatcactagcagctactaccgtggtgctcatggtatcattgttgtttatgatgtcactgaccaagagagcttcaacaatgttaagcaatggttgaatgaaattgaccgttatgcaagtgaaaatgtgaacaagcttctagttggaaacaagtgcgatctcacagcaaataaagttgtgtccactgagacagccaaggcatttgcggatgaaattggaatcccttttatggaaaccagtgctaagaattccaccaatgttgagcaggccttcatggctatggctgctgagattaagaacaggatggcaagccaaccgatgaacaacgccaggcctccaacagtgcagattcgtggacagcctgtgaaccaaaagtctggttgctgctcttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0022414 GO:0030054 GO:0030154 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

178

Amino Acids

19.78

Weight (kDa)

5.48

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17530 AT5G47200
fragaria_vesca	FvH4_5g20060
malus_domestica	MD06G1049500.v1.1
prunus_persica	Prupe.5G060000_v2.0.a1 Prupe.5G060000_v2.0.a1
pyrus_communis	pycom04g04430
rosa_chinensis	RchiOBHm_Chr7g0204921
rosa_laevigata	RLG00000003421
rosa_multiflora	Rmu_sc0002180.1_g000003 Rmu_sc0021398.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252670
rosa_rugosa	Rorug07G0086400
rosa_samantha	Rh7BG214000 Rh7CG230500 Rh7DG224800
rosa_wichuraiana	Rw7G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	14, 70, 347
AclI	AACGTT	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	108, 388
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	76, 370
AgsI	TTSAA	3 cut(s)	107, 217, 238
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	5 cut(s)	36, 122, 156, 213, 277
AluI	AGCT	5 cut(s)	36, 122, 156, 213, 277
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	323
AoxI	GGCC	3 cut(s)	124, 408, 473
ApeKI	GCWGC	3 cut(s)	153, 425, 525
ApoI	RAATTY	2 cut(s)	108, 388
BalI	TGGCCA	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	3 cut(s)	165, 412, 512
BccI	CCATC	2 cut(s)	80, 439
BciT130I	CCWGG	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	2 cut(s)	150, 281
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	3 cut(s)	154, 426, 526
BlsI	GCNGC	3 cut(s)	155, 427, 527
Bme1390I	CCNGG	1 cut(s)	472
BmrFI	CCNGG	1 cut(s)	472
BsaJI	CCNNGG	2 cut(s)	163, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 370
Bse1I	ACTGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	2 cut(s)	163, 336
BseGI	GGATG	4 cut(s)	22, 91, 355, 450
BseLI	CCNNNNNNNGG	2 cut(s)	76, 370
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	2 cut(s)	318, 420
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	165, 412, 512
BsgI	GTGCAG	1 cut(s)	506
BshFI	GGCC	3 cut(s)	126, 410, 475
BsiHKAI	GWGCWC	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	76, 370
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	126, 410, 475
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	3 cut(s)	14, 70, 347
BspANI	GGCC	3 cut(s)	126, 410, 475
BspCNI	CTCAG	2 cut(s)	319, 421
BsrDI	GCAATG	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	163, 336
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	4 cut(s)	76, 164, 251, 484
BstC8I	GCNNGC	3 cut(s)	124, 408, 451
BstDEI	CTNAG	3 cut(s)	327, 384, 429
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	4 cut(s)	22, 91, 355, 450
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 416, 425
BstNI	CCWGG	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	165, 412, 512
BstXI	CCANNNNNNTGG	1 cut(s)	518
BsuRI	GGCC	3 cut(s)	126, 410, 475
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	4 cut(s)	22, 91, 355, 450
BtsIMutI	CAGTG	5 cut(s)	72, 198, 324, 385, 489
Cac8I	GCNNGC	3 cut(s)	124, 408, 451
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	2 cut(s)	173, 415
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	327, 384, 429
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DraI	TTTAAA	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	336
Eco147I	AGGCCT	2 cut(s)	410, 475
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	176, 418
FaiI	YATR	6 cut(s)	174, 192, 255, 371, 416, 422
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	2 cut(s)	172, 414
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	154, 426, 526
FokI	GGATG	4 cut(s)	29, 98, 362, 457
Fsp4HI	GCNGC	3 cut(s)	154, 426, 526
FspBI	CTAG	2 cut(s)	150, 281
GluI	GCNGC	3 cut(s)	154, 426, 526
HaeIII	GGCC	3 cut(s)	126, 410, 475
Hin1II	CATG	2 cut(s)	176, 418
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	3 cut(s)	20, 360, 490
Hpy166II	GTNNAC	6 cut(s)	6, 58, 271, 324, 497, 508
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	6 cut(s)	6, 58, 271, 324, 497, 508
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	4 cut(s)	76, 164, 251, 484
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	257, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 416, 425
HpyF3I	CTNAG	3 cut(s)	327, 384, 429
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	2 cut(s)	176, 418
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	3 cut(s)	165, 412, 512
MaeI	CTAG	2 cut(s)	150, 281
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	1 cut(s)	522
MfeI	CAATTG	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	5 cut(s)	48, 108, 243, 354, 388
MluNI	TGGCCA	1 cut(s)	126
MmeI	TCCRAC	2 cut(s)	265, 503
MnlI	CCTC	1 cut(s)	486
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	4 cut(s)	63, 225, 435, 535
MslI	CAYNNNNRTG	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	3 cut(s)	42, 416, 425
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	2 cut(s)	176, 418
NmuCI	GTSAC	1 cut(s)	196
PceI	AGGCCT	2 cut(s)	410, 475
PfeI	GAWTC	3 cut(s)	20, 360, 490
PkrI	GCNGC	3 cut(s)	155, 427, 527
Psp1406I	AACGTT	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	4 cut(s)	63, 225, 435, 535
SatI	GCNGC	3 cut(s)	154, 426, 526
Sau3AI	GATC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	6 cut(s)	38, 124, 136, 158, 215, 279
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	5 cut(s)	48, 108, 243, 354, 388
SseBI	AGGCCT	2 cut(s)	410, 475
SsiI	CCGC	3 cut(s)	14, 70, 347
SspMI	CTAG	2 cut(s)	150, 281
StuI	AGGCCT	2 cut(s)	410, 475
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	4 cut(s)	76, 164, 251, 484
TaiI	ACGT	1 cut(s)	136
TasI	AATT	5 cut(s)	48, 108, 243, 354, 388
TfiI	GAWTC	3 cut(s)	20, 360, 490
Tru1I	TTAA	4 cut(s)	63, 225, 435, 535
Tru9I	TTAA	4 cut(s)	63, 225, 435, 535
TscAI	CASTG	5 cut(s)	79, 205, 331, 385, 489
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	153, 425, 525
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	255, 366, 403, 476
TspRI	CASTG	5 cut(s)	79, 205, 331, 385, 489
XapI	RAATTY	2 cut(s)	108, 388
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	150, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.