Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013836

Physical Location & Seq

Genomic Coordinates Forward (+)

6469897 .. 6472190

Gene Structure 2294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G060000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATCCCGAATATGACTATTTGTTCAAGCTTTTGTTGATTGGAGATTCTGGTGTCGGCAAGTCATGTCTACTTCTGCGGTTTGCTGATGATTCATACTTGGATAGCTACATCAGCACAATTGGAGTTGACTTTAAAATTCGCACTGTGGAGCAGGATGGGAAGACTATCAAACTCCAAATTTGGGACACTGCTGGCCAAGAACGTTTTAGGACAATCACTAGCAGCTACTACCGCGGGGCTCATGGAATCATTGTTGTTTATGATGTCACAGACCAAGAGAGCTTTAACAATGTTAAGCAATGGTTGAATGAAATCGACCGATATGCAAGTGAAAATGTGAACAAGCTTCTAGTGGGAAACAAGTGCGATCTCACGGCAAATAAAGTTGTGTCCTACGAGACAGCCAAGGCATTTGCTGATGAAATCGGAATCCCTTTCATGGAAACTAGTGCTAAGAATTCCACTAATGTGGAGCAAGCCTTCATGGCCATGGCTGCTGAGATCAAGAACAGGATGGCAAGCCAACCGATGAACAATGCCAGGCCTCCAACAGTGCAGATTCGGGGACAGCCTGTCAACCAAAAGTCTGGTTGCTGCTCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0022414 GO:0030054 GO:0030154 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

203

Amino Acids

22.62

Weight (kDa)

5.52

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17530 AT5G47200
fragaria_vesca	FvH4_5g20060
malus_domestica	MD06G1049500.v1.1
prunus_persica	Prupe.5G060000_v2.0.a1 Prupe.5G060000_v2.0.a1
pyrus_communis	pycom04g04430
rosa_chinensis	RchiOBHm_Chr7g0204921
rosa_laevigata	RLG00000003421
rosa_multiflora	Rmu_sc0002180.1_g000003 Rmu_sc0021398.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252670
rosa_rugosa	Rorug07G0086400
rosa_samantha	Rh7BG214000 Rh7CG230500 Rh7DG224800
rosa_wichuraiana	Rw7G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AccII	CGCG	1 cut(s)	237
AciI	CCGC	3 cut(s)	79, 235, 237
AclI	AACGTT	1 cut(s)	205
AcoI	YGGCCR	2 cut(s)	196, 489
AcsI	RAATTY	3 cut(s)	138, 180, 460
AfiI	CCNNNNNNNGG	2 cut(s)	184, 442
AgsI	TTSAA	2 cut(s)	28, 310
AhdI	GACNNNNNGTC	1 cut(s)	575
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	542
AleI	CACNNNNGTG	1 cut(s)	470
AluBI	AGCT	5 cut(s)	31, 108, 228, 285, 349
AluI	AGCT	5 cut(s)	31, 108, 228, 285, 349
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	3 cut(s)	196, 489, 545
ApeKI	GCWGC	3 cut(s)	225, 497, 597
ApoI	RAATTY	3 cut(s)	138, 180, 460
BalI	TGGCCA	2 cut(s)	198, 491
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	3 cut(s)	237, 484, 584
BccI	CCATC	2 cut(s)	152, 511
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	395
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	3 cut(s)	222, 353, 450
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	3 cut(s)	226, 498, 598
BlsI	GCNGC	3 cut(s)	227, 499, 599
Bme1390I	CCNGG	1 cut(s)	544
BmeRI	GACNNNNNGTC	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	235, 408, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 442
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	3 cut(s)	235, 408, 492
BseGI	GGATG	2 cut(s)	163, 522
BseLI	CCNNNNNNNGG	2 cut(s)	184, 442
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	492
BseXI	GCAGC	3 cut(s)	237, 484, 584
BsgI	GTGCAG	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	3 cut(s)	198, 491, 547
BsiEI	CGRYCG	1 cut(s)	322
BslFI	GGGAC	2 cut(s)	200, 582
BslI	CCNNNNNNNGG	2 cut(s)	184, 442
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	200, 582
BsnI	GGCC	3 cut(s)	198, 491, 547
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	370, 504
Bsp19I	CCATGG	1 cut(s)	492
BspACI	CCGC	3 cut(s)	79, 235, 237
BspANI	GGCC	3 cut(s)	198, 491, 547
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	235, 408, 492
BssMI	GATC	2 cut(s)	370, 504
BssT1I	CCWWGG	2 cut(s)	408, 492
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	2 cut(s)	148, 556
BstC8I	GCNNGC	3 cut(s)	196, 480, 523
BstDEI	CTNAG	3 cut(s)	456, 501, 606
BstDSI	CCRYGG	2 cut(s)	235, 492
BstF5I	GGATG	2 cut(s)	163, 522
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	373, 507
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	370, 504
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 234, 488, 497
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	542
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	237, 484, 584
BstV2I	GAAGAC	1 cut(s)	170
BstXI	CCANNNNNNTGG	2 cut(s)	472, 590
BsuRI	GGCC	3 cut(s)	198, 491, 547
BtgI	CCRYGG	2 cut(s)	235, 492
BtsCI	GGATG	2 cut(s)	163, 522
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	144, 189, 561
Cac8I	GCNNGC	3 cut(s)	196, 480, 523
Cfr42I	CCGCGG	1 cut(s)	238
CviAII	CATG	5 cut(s)	66, 245, 442, 487, 493
DdeI	CTNAG	3 cut(s)	456, 501, 606
DpnI	GATC	2 cut(s)	372, 506
DpnII	GATC	2 cut(s)	370, 504
DraI	TTTAAA	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	575
EaeI	YGGCCR	2 cut(s)	196, 489
Eam1105I	GACNNNNNGTC	1 cut(s)	575
Eco130I	CCWWGG	2 cut(s)	408, 492
Eco147I	AGGCCT	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	2 cut(s)	408, 492
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	2 cut(s)	408, 492
FaeI	CATG	5 cut(s)	69, 248, 445, 490, 496
FaiI	YATR	9 cut(s)	15, 67, 97, 246, 264, 327, 443, 488, 494
FaqI	GGGAC	2 cut(s)	200, 582
FatI	CATG	5 cut(s)	65, 244, 441, 486, 492
FauI	CCCGC	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	3 cut(s)	226, 498, 598
FokI	GGATG	2 cut(s)	170, 529
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	226, 498, 598
FspBI	CTAG	3 cut(s)	222, 353, 450
GluI	GCNGC	3 cut(s)	226, 498, 598
HaeIII	GGCC	3 cut(s)	198, 491, 547
Hin1II	CATG	5 cut(s)	69, 248, 445, 490, 496
HincII	GTYRAC	2 cut(s)	130, 580
HindII	GTYRAC	2 cut(s)	130, 580
HindIII	AAGCTT	2 cut(s)	29, 347
HinfI	GANTC	6 cut(s)	4, 47, 92, 249, 432, 562
Hpy166II	GTNNAC	4 cut(s)	71, 130, 343, 580
Hpy188I	TCNGA	1 cut(s)	431
Hpy188III	TCNNGA	2 cut(s)	8, 508
Hpy8I	GTNNAC	4 cut(s)	71, 130, 343, 580
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	2 cut(s)	148, 556
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	329, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 234, 488, 497
HpyF3I	CTNAG	3 cut(s)	456, 501, 606
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	5 cut(s)	69, 248, 445, 490, 496
KspI	CCGCGG	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	370, 504
LmnI	GCTCC	2 cut(s)	151, 475
LpnPI	CCDG	8 cut(s)	36, 140, 180, 499, 529, 556, 576, 588
Lsp1109I	GCAGC	3 cut(s)	237, 484, 584
MaeI	CTAG	3 cut(s)	222, 353, 450
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	372, 506
MboI	GATC	2 cut(s)	370, 504
MboII	GAAGA	2 cut(s)	175, 594
MfeI	CAATTG	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	244
MlsI	TGGCCA	2 cut(s)	198, 491
MluCI	AATT	4 cut(s)	120, 138, 180, 460
MluNI	TGGCCA	2 cut(s)	198, 491
MmeI	TCCRAC	1 cut(s)	575
MnlI	CCTC	1 cut(s)	558
Mox20I	TGGCCA	2 cut(s)	198, 491
MscI	TGGCCA	2 cut(s)	198, 491
MseI	TTAA	3 cut(s)	135, 288, 297
MslI	CAYNNNNRTG	2 cut(s)	470, 491
Msp20I	TGGCCA	2 cut(s)	198, 491
MspA1I	CMGCKG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	544
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	114, 234, 488, 497
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	2 cut(s)	370, 504
NlaIII	CATG	5 cut(s)	69, 248, 445, 490, 496
NmuCI	GTSAC	1 cut(s)	268
OliI	CACNNNNGTG	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	547
PfeI	GAWTC	6 cut(s)	4, 47, 92, 249, 432, 562
PkrI	GCNGC	3 cut(s)	227, 499, 599
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
RseI	CAYNNNNRTG	2 cut(s)	470, 491
SacII	CCGCGG	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	135, 288, 297
SatI	GCNGC	3 cut(s)	226, 498, 598
Sau3AI	GATC	2 cut(s)	370, 504
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	6 cut(s)	33, 110, 208, 230, 287, 351
Sfr303I	CCGCGG	1 cut(s)	238
SgrBI	CCGCGG	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	470, 491
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	4 cut(s)	120, 138, 180, 460
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	3 cut(s)	79, 235, 237
SspMI	CTAG	3 cut(s)	222, 353, 450
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	2 cut(s)	408, 492
TaaI	ACNGT	2 cut(s)	148, 556
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	318
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	4 cut(s)	120, 138, 180, 460
TfiI	GAWTC	6 cut(s)	4, 47, 92, 249, 432, 562
Tru1I	TTAA	3 cut(s)	135, 288, 297
Tru9I	TTAA	3 cut(s)	135, 288, 297
TscAI	CASTG	3 cut(s)	151, 196, 561
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	225, 497, 597
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	7 cut(s)	17, 84, 327, 430, 438, 475, 548
TspRI	CASTG	3 cut(s)	151, 196, 561
XapI	RAATTY	3 cut(s)	138, 180, 460
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	3 cut(s)	222, 353, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.