AT4G18372

Small nuclear

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017944
Physical Location & Seq
Reverse (-)
10151116 .. 10152139
1024 bp
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UTR
Exon/CDS
Intron
AT4G18372.1

Sequence Viewer

Length: 339 bp
ATGGAACAAGCTGCAGAGAGGAGTTCAACCATTGTTGCATCCACCTCTGAAGGGTCGGATTTTGATCCGATATCTCGATTGAGGAAGCTCTTGTTCCGCCAAATGCTTGTGGGAATCAAAGACGGCAGATTCTTCCTTGGAAATTTCCATTGCATTGACAAACAAGGAAACATCATTCTCCAAGACACTGTGGAGTATCGTAGCATACGAAGATCATCTCCTTCGCCTACTGAACAGCGTTGTCTTGGTATGATCCTAATCCCTTCCTCTTGCAGGACATCTTGCCATGTTGATTGCTCTATCGATGAACAGCTTTCGTTGATTCAGCTGAAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LSM

Protein Analysis

112

Amino Acids

12.65

Weight (kDa)

6.72

Isoelectric Point (pI)

69.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 27 - 88 1.2e-07 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18372 AT4G18372
fragaria_vesca FvH4_3g05282
malus_domestica MD05G1281500.v1.1
prunus_persica Prupe.4G083100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014441
rosa_laevigata RLG00000032110
rosa_multiflora Rmu_sc0031709.1_g000002 Rmu_ssc0000422.1_g000033
rosa_roxburghii Rroxscaffold_1G00062140
rosa_wichuraiana Rw5G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 97
AclWI GGATC 2 cut(s) 59, 247
AcsI RAATTY 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 51, 273
AgsI TTSAA 1 cut(s) 27
AluBI AGCT 4 cut(s) 11, 88, 313, 328
AluI AGCT 4 cut(s) 11, 88, 313, 328
AlwI GGATC 2 cut(s) 59, 247
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 142
BceAI ACGGC 1 cut(s) 139
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmsI GCATC 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 2 cut(s) 63, 257
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 273
Bse3DI GCAATG 1 cut(s) 148
Bse8I GATNNNNATC 2 cut(s) 63, 257
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 38
BseJI GATNNNNATC 2 cut(s) 63, 257
BseLI CCNNNNNNNGG 2 cut(s) 51, 273
BseMI GCAATG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 34
BshVI ATCGAT 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 51, 273
Bsp143I GATC 3 cut(s) 64, 212, 252
BspACI CCGC 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 2 cut(s) 59, 247
BsrDI GCAATG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 64, 212, 252
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 3 cut(s) 67, 215, 255
BstMBI GATC 3 cut(s) 64, 212, 252
BstSFI CTRYAG 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 186
ClaI ATCGAT 1 cut(s) 303
CviAII CATG 1 cut(s) 287
CviJI RGCY 4 cut(s) 11, 88, 313, 328
CviKI_1 RGCY 4 cut(s) 11, 88, 313, 328
DpnI GATC 3 cut(s) 66, 214, 254
DpnII GATC 3 cut(s) 64, 212, 252
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 136
Eco32I GATATC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 271
EcoRV GATATC 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 290
FaiI YATR 3 cut(s) 206, 251, 288
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 290
HinfI GANTC 3 cut(s) 114, 129, 322
Hpy188I TCNGA 3 cut(s) 49, 58, 69
Hpy188III TCNNGA 1 cut(s) 75
HpyAV CCTTC 3 cut(s) 44, 231, 273
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 4 cut(s) 14, 38, 153, 273
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 3 cut(s) 64, 212, 252
LpnPI CCDG 1 cut(s) 259
LweI GCATC 1 cut(s) 47
MalI GATC 3 cut(s) 66, 214, 254
MboI GATC 3 cut(s) 64, 212, 252
MboII GAAGA 2 cut(s) 124, 222
MluCI AATT 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 4 cut(s) 12, 55, 75, 277
MspA1I CMGCKG 1 cut(s) 328
NdeII GATC 3 cut(s) 64, 212, 252
NlaIII CATG 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 3 cut(s) 114, 129, 322
PkrI GCNGC 1 cut(s) 13
PstI CTGCAG 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 328
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 64, 212, 252
SetI ASST 5 cut(s) 13, 47, 90, 315, 330
SfaNI GCATC 1 cut(s) 47
SfcI CTRYAG 1 cut(s) 12
Sse9I AATT 1 cut(s) 142
SsiI CCGC 1 cut(s) 97
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 76, 303
TasI AATT 1 cut(s) 142
TfiI GAWTC 3 cut(s) 114, 129, 322
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 1 cut(s) 193
XagI CCTNNNNNAGG 1 cut(s) 271
XapI RAATTY 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.