Prupe.4G083100_v2.0.a1

LSM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017944
Physical Location & Seq
Reverse (-)
4053824 .. 4054802
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G083100.1

Sequence Viewer

Length: 348 bp
ATGGAACAAGAAGCGGCGGAGACACTGGTTCAGGCGGCGAGCTCCGATGGGTCGAACCCGAAGGGGCCAGACGAGTCGGAGGCTGTGAACCGGGCAAGGAAATTGCTGTTTCGGCGGATGCTAGTGGGGATAAGAGATGGGCGGTTTTTCTTGGGAAATTTTCACTGCATTGACAAACAAGGAAACATCATTCTTCAAGATGCAGTGGAGTATCGTAGCACGCGGCGGTCTTCGCCTTCTCCGATGGAGCAGCGGTTCCTCGGTCTCATTCTTATCCCTTCTTCTTGCCGTGTCTCTTGTCATGTTGGTTGCTCTGTTGAAGAACAATTGTCTCTGCTTTCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LSM

Protein Analysis

116

Amino Acids

12.8

Weight (kDa)

6.72

Isoelectric Point (pI)

68.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18372 AT4G18372
fragaria_vesca FvH4_3g05282
malus_domestica MD05G1281500.v1.1
prunus_persica Prupe.4G083100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014441
rosa_laevigata RLG00000032110
rosa_multiflora Rmu_sc0031709.1_g000002 Rmu_ssc0000422.1_g000033
rosa_roxburghii Rroxscaffold_1G00062140
rosa_wichuraiana Rw5G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 223
AciI CCGC 8 cut(s) 14, 17, 35, 115, 142, 223, 226, 253
AcsI RAATTY 1 cut(s) 157
AgsI TTSAA 2 cut(s) 197, 320
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 4 cut(s) 14, 269, 298, 336
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 65
AsuC2I CCSGG 1 cut(s) 92
BanII GRGCYC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 262
BccI CCATC 3 cut(s) 41, 131, 238
BceAI ACGGC 1 cut(s) 273
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 4 cut(s) 14, 269, 298, 336
BfaI CTAG 2 cut(s) 122, 346
BisI GCNGC 4 cut(s) 15, 36, 224, 251
BlsI GCNGC 4 cut(s) 16, 37, 225, 252
Bme1390I CCNGG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 66, 257
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 2 cut(s) 108, 190
BpiI GAAGAC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bse1I ACTGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 91
BsmAI GTCTC 4 cut(s) 14, 269, 298, 336
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 44
BspACI CCGC 8 cut(s) 14, 17, 35, 115, 142, 223, 226, 253
BspANI GGCC 1 cut(s) 67
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 66, 257
BspTNI GGTCTC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 40, 221
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 223
BstMAI GTCTC 4 cut(s) 14, 269, 298, 336
BstMWI GCNNNNNNNGC 2 cut(s) 112, 232
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 222
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 123
BtsI GCAGTG 2 cut(s) 163, 210
BtsIMutI CAGTG 3 cut(s) 23, 163, 210
Cac8I GCNNGC 2 cut(s) 40, 221
Cfr13I GGNCC 1 cut(s) 65
CviAII CATG 1 cut(s) 302
CviJI RGCY 3 cut(s) 42, 67, 83
CviKI_1 RGCY 3 cut(s) 42, 67, 83
EciI GGCGGA 2 cut(s) 32, 130
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 1 cut(s) 305
FaiI YATR 1 cut(s) 303
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 4 cut(s) 15, 36, 224, 251
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 15, 36, 224, 251
FspBI CTAG 2 cut(s) 122, 346
GluI GCNGC 4 cut(s) 15, 36, 224, 251
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 91
Hin1II CATG 1 cut(s) 305
HinfI GANTC 1 cut(s) 74
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 46, 79, 243
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 55, 246, 288
HpyCH4V TGCA 2 cut(s) 168, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 232
Hsp92II CATG 1 cut(s) 305
LmnI GCTCC 2 cut(s) 47, 247
LpnPI CCDG 4 cut(s) 11, 17, 81, 104
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 2 cut(s) 108, 190
MaeI CTAG 2 cut(s) 122, 346
MboII GAAGA 4 cut(s) 185, 222, 273, 332
MfeI CAATTG 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 3 cut(s) 101, 157, 326
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 2 cut(s) 73, 269
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 326
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 112, 232
NciI CCSGG 1 cut(s) 92
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 2 cut(s) 66, 257
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PkrI GCNGC 4 cut(s) 16, 37, 225, 252
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 66, 257
PspPI GGNCC 1 cut(s) 65
SacI GAGCTC 1 cut(s) 44
SatI GCNGC 4 cut(s) 15, 36, 224, 251
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 44
SetI ASST 1 cut(s) 44
SfaNI GCATC 2 cut(s) 108, 190
Sse9I AATT 3 cut(s) 101, 157, 326
SsiI CCGC 8 cut(s) 14, 17, 35, 115, 142, 223, 226, 253
SspMI CTAG 2 cut(s) 122, 346
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 90
TaqI TCGA 1 cut(s) 53
TaqII GACCGA 1 cut(s) 251
TasI AATT 3 cut(s) 101, 157, 326
TauI GCSGC 3 cut(s) 17, 38, 226
TscAI CASTG 3 cut(s) 30, 170, 210
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 3 cut(s) 30, 170, 210
XapI RAATTY 1 cut(s) 157
XspI CTAG 2 cut(s) 122, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.