RLG00000032110

LSM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017944
Physical Location & Seq
Reverse (-)
11056717 .. 11057806
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032110

Sequence Viewer

Length: 717 bp
ATGAACATGGAACAAGAAGCAGCGGAGTCCCTGATTCAGGTGGCGGGCTCAGAAGGGTCGAACCCGAACAGCTCAGACGGGTCGGACCACCCAGCTTGCTCGGAGGCCGTGACCCGCGTCAAGCAGCTTCTTTTCCGGCGAATGCTGGTCGGGATCAAAGACGGCCGCTTTTTCTTGGGGACCTTTCACTGCATTGACAAACAGGGTAACATCATTCTTCAAGACTCGGTGGAGTATCGGAGCACTCGCCGGAATTCCCCTTCTCCGATGGAGCAGCGCTGCCTCGGTCTGATTCTCATCCCTAGCTCTTGTCGTGTCTCTTGCCATGTTGGGTGCTCCATTGAAGAACAAATGAATCTGCTTTCGCCTTTGAGGAGAAGGGTGGTTATAAATGAAGGAGGAAGATGTTGGGATCCAGAGGTGAAGCCAGTTGGTATTGGAGATGCATCTGGTTCGAAACTTCTTGCCCGTTTTGATGCAGAAGGGAGAAGTGTCAGCGGTGAATCCTCTATCATCCTCGAATGTGGGAGCGCATTCAAGTTGCTCTTCTTAGATGACAATTCATTTTGTTTGCAGCCTTCTAACACACAAAGCCAAACTCCTAGGGGAAGGTTTCTTAGAGACAAGTTAAGGTTTATACTCAGAGGCAGTGAGGTTTCAATCCTTGGGTGTTGCTTTCATTGCTTGACCAGCTTGTTTGCCTTGTTGAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LSM

Protein Analysis

239

Amino Acids

26.18

Weight (kDa)

7.49

Isoelectric Point (pI)

68.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 41 - 101 5.3e-07 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18372 AT4G18372
fragaria_vesca FvH4_3g05282
malus_domestica MD05G1281500.v1.1
prunus_persica Prupe.4G083100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014441
rosa_laevigata RLG00000032110
rosa_multiflora Rmu_sc0031709.1_g000002 Rmu_ssc0000422.1_g000033
rosa_roxburghii Rroxscaffold_1G00062140
rosa_wichuraiana Rw5G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AccII CGCG 1 cut(s) 117
AciI CCGC 5 cut(s) 23, 44, 115, 166, 498
AclWI GGATC 3 cut(s) 161, 407, 420
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 1 cut(s) 712
AfeI AGCGCT 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 4 cut(s) 221, 344, 538, 660
AluBI AGCT 5 cut(s) 72, 95, 127, 306, 693
AluI AGCT 5 cut(s) 72, 95, 127, 306, 693
Alw21I GWGCWC 2 cut(s) 245, 338
Alw26I GTCTC 2 cut(s) 322, 615
AlwI GGATC 3 cut(s) 161, 407, 420
Aor51HI AGCGCT 1 cut(s) 278
AoxI GGCC 2 cut(s) 105, 163
ApeKI GCWGC 5 cut(s) 20, 124, 274, 279, 574
ApoI RAATTY 1 cut(s) 253
AspA2I CCTAGG 1 cut(s) 602
AspLEI GCGC 2 cut(s) 279, 533
AspS9I GGNCC 2 cut(s) 85, 180
AsuHPI GGTGA 2 cut(s) 433, 512
AsuII TTCGAA 1 cut(s) 455
AvaII GGWCC 2 cut(s) 85, 180
AvrII CCTAGG 1 cut(s) 602
BamHI GGATCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 50
Bbv12I GWGCWC 2 cut(s) 245, 338
BbvI GCAGC 5 cut(s) 32, 136, 266, 286, 586
BccI CCATC 1 cut(s) 262
BceAI ACGGC 2 cut(s) 92, 178
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BcoDI GTCTC 2 cut(s) 322, 615
BfaI CTAG 2 cut(s) 303, 603
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 6 cut(s) 21, 125, 166, 275, 280, 575
BlnI CCTAGG 1 cut(s) 602
BlsI GCNGC 6 cut(s) 22, 126, 167, 276, 281, 576
Bme18I GGWCC 2 cut(s) 85, 180
BmgT120I GGNCC 2 cut(s) 85, 180
BmiI GGNNCC 2 cut(s) 181, 414
BmsI GCATC 3 cut(s) 433, 455, 466
BoxI GACNNNNGTC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 283, 602, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 679
Bse8I GATNNNNATC 1 cut(s) 296
BseDI CCNNGG 3 cut(s) 283, 602, 664
BseGI GGATG 2 cut(s) 297, 513
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 3 cut(s) 63, 87, 655
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 1 cut(s) 388
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 5 cut(s) 32, 136, 266, 286, 586
BseYI CCCAGC 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 2 cut(s) 107, 165
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 245, 338
BsiSI CCGG 2 cut(s) 136, 250
BslFI GGGAC 2 cut(s) 13, 193
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 2 cut(s) 322, 615
BsmFI GGGAC 2 cut(s) 13, 193
BsmI GAATGC 2 cut(s) 147, 533
BsnI GGCC 2 cut(s) 107, 165
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 50, 245, 338
Bsp143I GATC 2 cut(s) 153, 412
BspACI CCGC 5 cut(s) 23, 44, 115, 166, 498
BspANI GGCC 2 cut(s) 107, 165
BspCNI CTCAG 3 cut(s) 62, 86, 654
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 181, 414
BspPI GGATC 3 cut(s) 161, 407, 420
BspQI GCTCTTC 1 cut(s) 551
BspT104I TTCGAA 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 679
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 283, 602, 664
BssMI GATC 2 cut(s) 153, 412
BssT1I CCWWGG 2 cut(s) 602, 664
Bst6I CTCTTC 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 46, 97
BstDEI CTNAG 5 cut(s) 49, 73, 550, 617, 641
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 297, 513
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 2 cut(s) 279, 533
BstKTI GATC 2 cut(s) 156, 415
BstMAI GTCTC 2 cut(s) 322, 615
BstMBI GATC 2 cut(s) 153, 412
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 681, 690
BstPAI GACNNNNGTC 1 cut(s) 116
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 5 cut(s) 32, 136, 266, 286, 586
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BstZI CGGCCG 1 cut(s) 163
BsuRI GGCC 2 cut(s) 107, 165
BtsCI GGATG 2 cut(s) 297, 513
BtsI GCAGTG 2 cut(s) 187, 655
BtsIMutI CAGTG 2 cut(s) 187, 655
Cac8I GCNNGC 2 cut(s) 46, 97
CfoI GCGC 2 cut(s) 279, 533
Cfr13I GGNCC 2 cut(s) 85, 180
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 711
CspCI CAANNNNNGTGG 2 cut(s) 77, 112
CviAII CATG 2 cut(s) 7, 326
CviQI GTAC 1 cut(s) 711
DdeI CTNAG 5 cut(s) 49, 73, 550, 617, 641
DpnI GATC 2 cut(s) 155, 414
DpnII GATC 2 cut(s) 153, 412
EaeI YGGCCR 1 cut(s) 163
EagI CGGCCG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 551
EarI CTCTTC 1 cut(s) 551
EclXI CGGCCG 1 cut(s) 163
Eco130I CCWWGG 2 cut(s) 602, 664
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 85, 180
Eco47III AGCGCT 1 cut(s) 278
Eco52I CGGCCG 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 602, 664
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 2 cut(s) 602, 664
FaeI CATG 2 cut(s) 10, 329
FaiI YATR 4 cut(s) 8, 327, 389, 638
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 2 cut(s) 13, 193
FatI CATG 2 cut(s) 6, 325
FauI CCCGC 2 cut(s) 37, 122
Fnu4HI GCNGC 6 cut(s) 21, 125, 166, 275, 280, 575
FokI GGATG 2 cut(s) 284, 500
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 6 cut(s) 21, 125, 166, 275, 280, 575
FspBI CTAG 2 cut(s) 303, 603
GlaI GCGC 2 cut(s) 278, 532
GluI GCNGC 6 cut(s) 21, 125, 166, 275, 280, 575
GsaI CCCAGC 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 2 cut(s) 107, 165
HapII CCGG 2 cut(s) 136, 250
HgaI GACGC 1 cut(s) 106
HhaI GCGC 2 cut(s) 279, 533
Hin1II CATG 2 cut(s) 10, 329
Hin6I GCGC 2 cut(s) 277, 531
HinP1I GCGC 2 cut(s) 277, 531
HinfI GANTC 6 cut(s) 26, 34, 224, 292, 355, 503
HpaII CCGG 2 cut(s) 136, 250
HphI GGTGA 2 cut(s) 433, 512
Hpy188I TCNGA 8 cut(s) 52, 76, 85, 103, 240, 267, 291, 644
Hpy188III TCNNGA 3 cut(s) 151, 221, 416
HpyAV CCTTC 7 cut(s) 47, 270, 372, 389, 476, 588, 603
HpyCH4V TGCA 4 cut(s) 192, 446, 479, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 681, 690
HpyF3I CTNAG 5 cut(s) 49, 73, 550, 617, 641
Hsp92II CATG 2 cut(s) 10, 329
HspAI GCGC 2 cut(s) 277, 531
Kzo9I GATC 2 cut(s) 153, 412
LguI GCTCTTC 1 cut(s) 551
LmnI GCTCC 4 cut(s) 240, 271, 341, 528
Lsp1109I GCAGC 5 cut(s) 32, 136, 266, 286, 586
LweI GCATC 3 cut(s) 433, 455, 466
MaeI CTAG 2 cut(s) 303, 603
MaeIII GTNAC 2 cut(s) 109, 206
MalI GATC 2 cut(s) 155, 414
MboI GATC 2 cut(s) 153, 412
MboII GAAGA 4 cut(s) 209, 356, 414, 538
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 3 cut(s) 50, 245, 338
MluCI AATT 2 cut(s) 253, 559
MlyI GAGTC 2 cut(s) 35, 218
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 9 cut(s) 97, 293, 366, 392, 412, 517, 527, 638, 646
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 1 cut(s) 629
MspA1I CMGCKG 2 cut(s) 23, 498
MspI CCGG 2 cut(s) 136, 250
Mva1269I GAATGC 2 cut(s) 147, 533
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 681, 690
NdeII GATC 2 cut(s) 153, 412
NlaIII CATG 2 cut(s) 10, 329
NlaIV GGNNCC 2 cut(s) 181, 414
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 448
NspV TTCGAA 1 cut(s) 455
PciSI GCTCTTC 1 cut(s) 551
PctI GAATGC 2 cut(s) 147, 533
PfeI GAWTC 4 cut(s) 34, 292, 355, 503
PkrI GCNGC 6 cut(s) 22, 126, 167, 276, 281, 576
PleI GAGTC 2 cut(s) 34, 218
PpsI GAGTC 2 cut(s) 34, 218
PpuMI RGGWCCY 1 cut(s) 180
PshAI GACNNNNGTC 1 cut(s) 116
PsiI TTATAA 1 cut(s) 389
Psp5II RGGWCCY 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 181, 414
PspPI GGNCC 2 cut(s) 85, 180
PspPPI RGGWCCY 1 cut(s) 180
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 1 cut(s) 712
RsaNI GTAC 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 551
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 6 cut(s) 21, 125, 166, 275, 280, 575
Sau3AI GATC 2 cut(s) 153, 412
Sau96I GGNCC 2 cut(s) 85, 180
SchI GAGTC 2 cut(s) 35, 218
SduI GDGCHC 3 cut(s) 50, 245, 338
SfaNI GCATC 3 cut(s) 433, 455, 466
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 2 cut(s) 85, 180
Sse9I AATT 2 cut(s) 253, 559
SsiI CCGC 5 cut(s) 23, 44, 115, 166, 498
SspMI CTAG 2 cut(s) 303, 603
StyI CCWWGG 2 cut(s) 602, 664
TaqI TCGA 3 cut(s) 59, 455, 519
TaqII GACCGA 1 cut(s) 275
TasI AATT 2 cut(s) 253, 559
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 4 cut(s) 34, 292, 355, 503
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TscAI CASTG 2 cut(s) 194, 655
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 5 cut(s) 20, 124, 274, 279, 574
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 5 cut(s) 17, 368, 408, 552, 668
TspRI CASTG 2 cut(s) 194, 655
VpaK11BI GGWCC 2 cut(s) 85, 180
XagI CCTNNNNNAGG 1 cut(s) 35
XapI RAATTY 1 cut(s) 253
XmaJI CCTAGG 1 cut(s) 602
XspI CTAG 2 cut(s) 303, 603
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.