AT4G18400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012523
Physical Location & Seq
Reverse (-)
10169866 .. 10171273
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18400.1

Sequence Viewer

Length: 324 bp
ATGGCGGAAGAAGAGAAGCGAACTTCACCGGAACCTCCTCTTCCTTCTCCGCCGGAATCTTCATCCCAACCCGAACATCCCCCACCGGAAACGTCTACTCCTCCGGCTACATTCGATCCTAGTCGAATGATTGGGATCATCAAAAGGAAAGCTTTGATTAAGGATTTAGCTGCTGCTTACCACGTTGAGTGTCTTGCTCTTTGCCGAGAGCTTCTGGAGCTCCAAAAGAGAAAGGACGAGCCGTTCCTGGACACAAAAGCTACGGAAGATCTGAGAAAAGAGACGTTGAGGTCTTCTTCCAAACGAGCTAAGAAGAAACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.1

Weight (kDa)

8.95

Isoelectric Point (pI)

102.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18400
fragaria_vesca FvH4_3g05190 FvH4_3g19851 FvH4_6g47640 FvH4_7g10051
malus_domestica MD05G1280800.v1.1 MD10G1259200.v1.1
prunus_persica Prupe.4G084100_v2.0.a1
pyrus_communis pycom05g26100 pycom10g21570
rosa_chinensis RchiOBHm_Chr5g0014561
rosa_laevigata RLG00000032128
rosa_multiflora Rmu_sc0000120.1_g000003
rosa_roxburghii Rroxscaffold_1G00061920
rosa_rugosa Rorug05G0019400.1
rosa_samantha Rh5AG114600 Rh5BG111500 Rh5CG123000 Rh5DG110900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 95
AciI CCGC 2 cut(s) 5, 50
AclI AACGTT 1 cut(s) 319
AclWI GGATC 2 cut(s) 110, 143
AjnI CCWGG 1 cut(s) 246
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 6 cut(s) 152, 170, 211, 220, 260, 308
AluI AGCT 6 cut(s) 152, 170, 211, 220, 260, 308
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 2 cut(s) 110, 143
ApeKI GCWGC 2 cut(s) 170, 173
AsuHPI GGTGA 1 cut(s) 18
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 157, 160
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 268
BisI GCNGC 2 cut(s) 171, 174
BlsI GCNGC 2 cut(s) 172, 175
Bme1390I CCNGG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 134
BsaWI WCCGGW 2 cut(s) 28, 85
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 1 cut(s) 248
BseGI GGATG 2 cut(s) 62, 76
BseJI GATNNNNATC 1 cut(s) 134
BseMII CTCAG 1 cut(s) 263
BseRI GAGGAG 2 cut(s) 27, 90
BseXI GCAGC 2 cut(s) 157, 160
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 4 cut(s) 29, 53, 86, 104
BsmAI GTCTC 1 cut(s) 275
BsmBI CGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 115, 135, 268
BspACI CCGC 2 cut(s) 5, 50
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 33
BspPI GGATC 2 cut(s) 110, 143
BssMI GATC 3 cut(s) 115, 135, 268
Bst2UI CCWGG 1 cut(s) 248
Bst6I CTCTTC 2 cut(s) 6, 45
BstDEI CTNAG 2 cut(s) 272, 309
BstF5I GGATG 2 cut(s) 62, 76
BstKTI GATC 3 cut(s) 118, 138, 271
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 3 cut(s) 115, 135, 268
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 157, 160
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtsCI GGATG 2 cut(s) 62, 76
CviJI RGCY 8 cut(s) 107, 152, 170, 211, 220, 241, 260, 308
CviKI_1 RGCY 8 cut(s) 107, 152, 170, 211, 220, 241, 260, 308
DdeI CTNAG 2 cut(s) 272, 309
DpnI GATC 3 cut(s) 117, 137, 270
DpnII GATC 3 cut(s) 115, 135, 268
DrdI GACNNNNNNGTC 1 cut(s) 289
DseDI GACNNNNNNGTC 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 6, 45
EarI CTCTTC 2 cut(s) 6, 45
EciI GGCGGA 2 cut(s) 20, 39
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 275
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 2 cut(s) 171, 174
FokI GGATG 2 cut(s) 49, 63
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 171, 174
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 171, 174
GsuI CTGGAG 1 cut(s) 236
HapII CCGG 4 cut(s) 29, 53, 86, 104
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 1 cut(s) 56
HpaII CCGG 4 cut(s) 29, 53, 86, 104
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 54
HpyCH4IV ACGT 4 cut(s) 92, 183, 284, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 2 cut(s) 272, 309
HpySE526I ACGT 4 cut(s) 92, 183, 284, 319
Kzo9I GATC 3 cut(s) 115, 135, 268
LmnI GCTCC 2 cut(s) 217, 225
LpnPI CCDG 7 cut(s) 42, 66, 99, 117, 200, 233, 260
Lsp1109I GCAGC 2 cut(s) 157, 160
MaeI CTAG 1 cut(s) 120
MaeII ACGT 4 cut(s) 92, 183, 284, 319
MalI GATC 3 cut(s) 117, 137, 270
MboI GATC 3 cut(s) 115, 135, 268
MboII GAAGA 7 cut(s) 20, 23, 32, 51, 278, 285, 288
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 222
MnlI CCTC 4 cut(s) 45, 48, 111, 282
MseI TTAA 2 cut(s) 159, 322
MspI CCGG 4 cut(s) 29, 53, 86, 104
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 3 cut(s) 115, 135, 268
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 230
PfeI GAWTC 1 cut(s) 56
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 2 cut(s) 172, 175
Psp124BI GAGCTC 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 33
PsuI RGATCY 1 cut(s) 268
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 159, 322
SatI GCNGC 2 cut(s) 171, 174
Sau3AI GATC 3 cut(s) 115, 135, 268
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 222
SsiI CCGC 2 cut(s) 5, 50
SspMI CTAG 1 cut(s) 120
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 246
TaiI ACGT 4 cut(s) 95, 186, 287, 322
TaqI TCGA 2 cut(s) 114, 124
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 159, 322
Tru9I TTAA 2 cut(s) 159, 322
TseI GCWGC 2 cut(s) 170, 173
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 95
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.