FvH4_3g05190

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
2995627 .. 2997804
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05190.t1

Sequence Viewer

Length: 450 bp
ATGGACCAACCACAACAAAACTTGGCTCAACACCATCAAGAAGAAGAAGAAGAAGAAGAATCATCCCAACAAGAGGAACAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGGAGAAGGAGAATCTGAACCAGAAGCAGAAGCAGACACAGATCAAGAAGAAGAAGAAGCTCTTCCTTCTGATGAGCCACCACCCTCCACTCAAACCGATGATCCTCCCGTTCCTGATCCCCCATTCGATCCCAGCCGAATGATTGGCATTATTAGAAGAAAATCCTTGATCAAAGAGTTAGCTGCTATGTACCATGCCGAGTGCCTTTCATACTGTCAAGAGCTTTTGGAGCTTCAACGAAAAGGGGATGAGCCACTAGTTGACTTGAAACATCCAGAGGATTTGAAGAAGGATGCAATCCGGCCCCCAAAGCGCCTAAAGAAGACAGCTAGACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.21

Weight (kDa)

4.25

Isoelectric Point (pI)

101.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012523)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 206, 221, 233
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 347, 379, 397
AhlI ACTAGT 1 cut(s) 367
AluBI AGCT 5 cut(s) 170, 293, 334, 343, 440
AluI AGCT 5 cut(s) 170, 293, 334, 343, 440
AlwI GGATC 3 cut(s) 206, 221, 233
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 4, 414
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 102, 440
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 42
BclI TGATCA 1 cut(s) 279
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 3 cut(s) 368, 441, 448
BfoI RGCGCY 1 cut(s) 427
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 414
BmiI GGNNCC 1 cut(s) 416
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 2 cut(s) 102, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseGI GGATG 4 cut(s) 62, 364, 382, 409
BseLI CCNNNNNNNGG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 280
BseYI CCCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 415
BsiSI CCGG 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 73
BsnI GGCC 1 cut(s) 415
Bsp143I GATC 5 cut(s) 151, 211, 226, 238, 279
BspANI GGCC 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 416
BspPI GGATC 3 cut(s) 206, 221, 233
BspQI GCTCTTC 1 cut(s) 177
BssMI GATC 5 cut(s) 151, 211, 226, 238, 279
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 177
BstF5I GGATG 4 cut(s) 62, 364, 382, 409
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 5 cut(s) 154, 214, 229, 241, 282
BstMBI GATC 5 cut(s) 151, 211, 226, 238, 279
BstMWI GCNNNNNNNGC 2 cut(s) 340, 421
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 2 cut(s) 102, 440
BsuRI GGCC 1 cut(s) 415
BtsCI GGATG 4 cut(s) 62, 364, 382, 409
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 2 cut(s) 4, 414
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 305
CviQI GTAC 1 cut(s) 301
DpnI GATC 5 cut(s) 153, 213, 228, 240, 281
DpnII GATC 5 cut(s) 151, 211, 226, 238, 279
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 1 cut(s) 308
FaiI YATR 3 cut(s) 299, 306, 322
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 4 cut(s) 49, 369, 371, 416
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 3 cut(s) 368, 441, 448
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 294
GsaI CCCAGC 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 1 cut(s) 415
HapII CCGG 1 cut(s) 412
HhaI GCGC 1 cut(s) 426
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 2 cut(s) 59, 122
HpaII CCGG 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 127, 181
Hpy188III TCNNGA 5 cut(s) 38, 155, 224, 329, 386
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 4 cut(s) 104, 110, 186, 394
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 421
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 5 cut(s) 151, 211, 226, 238, 279
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 5 cut(s) 144, 237, 256, 399, 425
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 394
MaeI CTAG 3 cut(s) 368, 441, 448
MalI GATC 5 cut(s) 153, 213, 228, 240, 281
MboI GATC 5 cut(s) 151, 211, 226, 238, 279
MnlI CCTC 4 cut(s) 67, 205, 225, 382
MroXI GAANNNNTTC 1 cut(s) 171
MspI CCGG 1 cut(s) 412
MwoI GCNNNNNNNGC 2 cut(s) 340, 421
NdeII GATC 5 cut(s) 151, 211, 226, 238, 279
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 416
NmeAIII GCCGAG 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 59, 122
PkrI GCNGC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 416
PspPI GGNCC 2 cut(s) 4, 414
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SapI GCTCTTC 1 cut(s) 177
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 5 cut(s) 151, 211, 226, 238, 279
Sau96I GGNCC 2 cut(s) 4, 414
SetI ASST 5 cut(s) 172, 295, 336, 345, 442
SfaNI GCATC 1 cut(s) 394
SinI GGWCC 1 cut(s) 4
SpeI ACTAGT 1 cut(s) 367
SspMI CTAG 3 cut(s) 368, 441, 448
TaaI ACNGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 237
TfiI GAWTC 2 cut(s) 59, 122
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 3 cut(s) 368, 441, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.