Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012523

Physical Location & Seq

Genomic Coordinates Forward (+)

35327506 .. 35329986

Gene Structure 2481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1259200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGTCAAGAAGAAGAACAGCAACAACTGCAGCAGCGACCAGGAGACGAAGCTCCTCCACCTTCTTCCCAGGCGACCTCTCAGGAACCCTCCACCCAAACCGCCCCTCCTCCTCCCCCGTTCGATCCCAGTCGAATGATTGGCATCATCAAAAGAAAGGCTTTGATAAAAGAGTTAGCTGCTGCATACCATGCGGAGTGCCTTGCATACTGTCAAGAGATTTTGGAACTTCAAAGGAAATCGGATGAGCCATTTATTGACCTGAAACCTCCGGAGGATATGAAGAAGGAGATAATGCGGCCCCCCAAGCGTCTAAAGACCCCCGCTAGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.58

Weight (kDa)

6.13

Isoelectric Point (pI)

92.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18400
fragaria_vesca	FvH4_3g05190 FvH4_3g19851 FvH4_6g47640 FvH4_7g10051
malus_domestica	MD05G1280800.v1.1 MD10G1259200.v1.1
prunus_persica	Prupe.4G084100_v2.0.a1
pyrus_communis	pycom05g26100 pycom10g21570
rosa_chinensis	RchiOBHm_Chr5g0014561
rosa_laevigata	RLG00000032128
rosa_multiflora	Rmu_sc0000120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00061920
rosa_rugosa	Rorug05G0019400.1
rosa_samantha	Rh5AG114600 Rh5BG111500 Rh5CG123000 Rh5DG110900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	271
AciI	CCGC	4 cut(s)	102, 194, 298, 324
AclWI	GGATC	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	40, 69
AluBI	AGCT	2 cut(s)	53, 179
AluI	AGCT	2 cut(s)	53, 179
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	271
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	4 cut(s)	31, 34, 179, 182
AspS9I	GGNCC	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	43, 46, 166, 169
BciT130I	CCWGG	2 cut(s)	42, 71
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	5 cut(s)	32, 35, 180, 183, 299
BlsI	GCNGC	5 cut(s)	33, 36, 181, 184, 300
Bme1390I	CCNGG	2 cut(s)	42, 71
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	2 cut(s)	87, 302
BmrFI	CCNGG	2 cut(s)	42, 71
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bse1I	ACTGG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	143
BseAI	TCCGGA	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	42, 71
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	3 cut(s)	45, 99, 102
BseXI	GCAGC	4 cut(s)	43, 46, 166, 169
BshFI	GGCC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	301
Bsp13I	TCCGGA	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	4 cut(s)	102, 194, 298, 324
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	87, 302
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	42, 71
Bst4CI	ACNGT	1 cut(s)	212
BstAPI	GCANNNNNTGC	2 cut(s)	28, 191
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 191, 307
BstNI	CCWGG	2 cut(s)	42, 71
BstSCI	CCNGG	2 cut(s)	40, 69
BstSFI	CTRYAG	1 cut(s)	29
BstV1I	GCAGC	4 cut(s)	43, 46, 166, 169
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	300
CseI	GACGC	1 cut(s)	299
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	5 cut(s)	53, 161, 179, 250, 301
CviKI_1	RGCY	5 cut(s)	53, 161, 179, 250, 301
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	40, 69
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	1 cut(s)	194
FaiI	YATR	4 cut(s)	187, 192, 208, 281
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FatI	CATG	1 cut(s)	190
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	32, 35, 180, 183, 299
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	5 cut(s)	32, 35, 180, 183, 299
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	5 cut(s)	32, 35, 180, 183, 299
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	194
HpaII	CCGG	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	4 cut(s)	8, 83, 215, 272
HpyAV	CCTTC	2 cut(s)	72, 280
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	31, 185, 206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 191, 307
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	8 cut(s)	27, 54, 56, 68, 83, 142, 275, 285
Lsp1109I	GCAGC	4 cut(s)	43, 46, 166, 169
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	327
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	4 cut(s)	23, 26, 57, 295
MnlI	CCTC	8 cut(s)	66, 88, 100, 117, 120, 123, 268, 279
MroI	TCCGGA	1 cut(s)	271
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	2 cut(s)	42, 71
MvaI	CCWGG	2 cut(s)	42, 71
MwoI	GCNNNNNNNGC	3 cut(s)	28, 191, 307
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	2 cut(s)	87, 302
PkrI	GCNGC	5 cut(s)	33, 36, 181, 184, 300
Psp6I	CCWGG	2 cut(s)	40, 69
PspGI	CCWGG	2 cut(s)	40, 69
PspN4I	GGNNCC	2 cut(s)	87, 302
PspPI	GGNCC	1 cut(s)	300
PstI	CTGCAG	1 cut(s)	33
SatI	GCNGC	5 cut(s)	32, 35, 180, 183, 299
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	300
ScrFI	CCNGG	2 cut(s)	42, 71
SetI	ASST	6 cut(s)	55, 64, 80, 181, 264, 271
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	29
SsiI	CCGC	4 cut(s)	102, 194, 298, 324
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	40, 69
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	123, 133
TauI	GCSGC	1 cut(s)	301
TseI	GCWGC	4 cut(s)	31, 34, 179, 182
TspDTI	ATGAA	1 cut(s)	296
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.