AT4G19400

Belongs to the profilin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017896
Physical Location & Seq
Reverse (-)
10580827 .. 10581989
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19400.1

Sequence Viewer

Length: 447 bp
ATGGATTCGGCGTTTGTGGACAGAGCTTGGGACAAATGGGTTACTACGGGTAACGTTGGTTCTTCAGGTAATCCATTGAAGGCTGCTATTTTGATTAACTATGATCCTACAGGACCTTCTCGTCTCTTATCAACAATAGCTAAACAAGAAGGGATTGATATCTATCCAGTTGATCTAAAGCAATTTATAGATTTCATGAGATGTGGCAATCTTCCTACTGAGACTTTTGTTCTTGGATCCAACCAATACATAATAACATCTATTCATGAGAACTGGTTCGCTGCTAGGTGTTTAAACACTTCCCAGCCTGCTGGTGAAGGAGCTATTGTTATGCAGACTGCGGTTTACGTGTTGGTTGCTCTATATGATGGATCAATTGGTTCAGCTTCTCAAGCTATGGCTGCAGCTGATCAGTTTGCATCGCAGCTGAGTCGGAAAAACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Profilin

Protein Analysis

148

Amino Acids

16.04

Weight (kDa)

4.93

Isoelectric Point (pI)

22.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 10 - 147 1.5e-10 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19400
fragaria_vesca FvH4_5g24490 FvH4_5g24490 FvH4_5g24490
malus_domestica MD16G1286900.v1.1
prunus_persica Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1
pyrus_communis pycom16g25690
rosa_samantha Rh7BG277400
rosa_wichuraiana Rw7G024380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 120
AciI CCGC 1 cut(s) 341
AclI AACGTT 1 cut(s) 54
AclWI GGATC 4 cut(s) 98, 231, 244, 379
AcuI CTGAAG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 7 cut(s) 26, 140, 323, 386, 395, 407, 427
AluI AGCT 7 cut(s) 26, 140, 323, 386, 395, 407, 427
Alw26I GTCTC 2 cut(s) 128, 215
AlwI GGATC 4 cut(s) 98, 231, 244, 379
ApeKI GCWGC 5 cut(s) 83, 281, 401, 404, 424
Asp700I GAANNNNTTC 2 cut(s) 275, 440
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 326
AvaII GGWCC 1 cut(s) 113
BamHI GGATCC 1 cut(s) 236
BbvI GCAGC 5 cut(s) 70, 268, 388, 416, 436
BccI CCATC 1 cut(s) 362
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 128, 215
BfaI CTAG 2 cut(s) 285, 445
BfmI CTRYAG 2 cut(s) 108, 402
BisI GCNGC 5 cut(s) 84, 282, 402, 405, 425
BlsI GCNGC 5 cut(s) 85, 283, 403, 406, 426
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 349
BsaBI GATNNNNATC 2 cut(s) 158, 162
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse1I ACTGG 2 cut(s) 167, 278
Bse8I GATNNNNATC 2 cut(s) 158, 162
BseJI GATNNNNATC 2 cut(s) 158, 162
BseMII CTCAG 2 cut(s) 210, 419
BseNI ACTGG 2 cut(s) 167, 278
BseXI GCAGC 5 cut(s) 70, 268, 388, 416, 436
BseYI CCCAGC 1 cut(s) 303
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 128, 215
BsmBI CGTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 44
Bsp143I GATC 5 cut(s) 103, 172, 236, 371, 409
BspACI CCGC 1 cut(s) 341
BspCNI CTCAG 2 cut(s) 211, 420
BspHI TCATGA 2 cut(s) 195, 265
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 4 cut(s) 98, 231, 244, 379
BsrI ACTGG 2 cut(s) 167, 278
BssMI GATC 5 cut(s) 103, 172, 236, 371, 409
BstBAI YACGTR 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 219, 428
BstKTI GATC 5 cut(s) 106, 175, 239, 374, 412
BstMAI GTCTC 2 cut(s) 128, 215
BstMBI GATC 5 cut(s) 103, 172, 236, 371, 409
BstMWI GCNNNNNNNGC 2 cut(s) 392, 401
BstSFI CTRYAG 2 cut(s) 108, 402
BstV1I GCAGC 5 cut(s) 70, 268, 388, 416, 436
BstX2I RGATCY 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 311
BstYI RGATCY 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 309
CciI TCATGA 2 cut(s) 195, 265
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 2 cut(s) 196, 266
DdeI CTNAG 2 cut(s) 219, 428
DpnI GATC 5 cut(s) 105, 174, 238, 373, 411
DpnII GATC 5 cut(s) 103, 172, 236, 371, 409
DraI TTTAAA 1 cut(s) 294
DrdI GACNNNNNNGTC 1 cut(s) 120
DseDI GACNNNNNNGTC 1 cut(s) 120
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 113
EcoRV GATATC 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 199, 269
FaiI YATR 9 cut(s) 102, 188, 197, 251, 267, 332, 364, 366, 398
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 195, 265
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 84, 282, 402, 405, 425
Fsp4HI GCNGC 5 cut(s) 84, 282, 402, 405, 425
FspBI CTAG 2 cut(s) 285, 445
GluI GCNGC 5 cut(s) 84, 282, 402, 405, 425
GsaI CCCAGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 199, 269
HinfI GANTC 2 cut(s) 5, 430
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 19, 346
Hpy188I TCNGA 1 cut(s) 435
Hpy188III TCNNGA 2 cut(s) 196, 266
Hpy8I GTNNAC 2 cut(s) 19, 346
HpyAV CCTTC 4 cut(s) 73, 126, 143, 311
HpyCH4IV ACGT 2 cut(s) 54, 348
HpyCH4V TGCA 3 cut(s) 334, 404, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 401
HpyF3I CTNAG 2 cut(s) 219, 428
HpySE526I ACGT 2 cut(s) 54, 348
Hsp92II CATG 2 cut(s) 199, 269
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 5 cut(s) 103, 172, 236, 371, 409
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 51, 96, 180, 259, 297, 317, 321
Lsp1109I GCAGC 5 cut(s) 70, 268, 388, 416, 436
LweI GCATC 1 cut(s) 428
MaeI CTAG 2 cut(s) 285, 445
MaeII ACGT 2 cut(s) 54, 348
MaeIII GTNAC 2 cut(s) 40, 50
MalI GATC 5 cut(s) 105, 174, 238, 373, 411
MboI GATC 5 cut(s) 103, 172, 236, 371, 409
MboII GAAGA 2 cut(s) 54, 203
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 1 cut(s) 236
MluCI AATT 2 cut(s) 182, 375
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 2 cut(s) 264, 413
MroXI GAANNNNTTC 2 cut(s) 275, 440
MseI TTAA 2 cut(s) 96, 293
MspA1I CMGCKG 2 cut(s) 407, 427
MssI GTTTAAAC 1 cut(s) 294
MunI CAATTG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 392, 401
NdeII GATC 5 cut(s) 103, 172, 236, 371, 409
NlaIII CATG 2 cut(s) 199, 269
NlaIV GGNNCC 1 cut(s) 238
PagI TCATGA 2 cut(s) 195, 265
PdmI GAANNNNTTC 2 cut(s) 275, 440
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 5 cut(s) 85, 283, 403, 406, 426
PleI GAGTC 1 cut(s) 438
PmeI GTTTAAAC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 438
Ppu21I YACGTR 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 113
Psp1406I AACGTT 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 113
PspPPI RGGWCCY 1 cut(s) 113
PsrI GAACNNNNNNTAC 2 cut(s) 43, 75
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 236
PvuII CAGCTG 2 cut(s) 407, 427
SaqAI TTAA 2 cut(s) 96, 293
SatI GCNGC 5 cut(s) 84, 282, 402, 405, 425
Sau3AI GATC 5 cut(s) 103, 172, 236, 371, 409
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 439
SfaNI GCATC 1 cut(s) 428
SfcI CTRYAG 2 cut(s) 108, 402
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
Sse9I AATT 2 cut(s) 182, 375
SsiI CCGC 1 cut(s) 341
SspMI CTAG 2 cut(s) 285, 445
TaiI ACGT 2 cut(s) 57, 351
TasI AATT 2 cut(s) 182, 375
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 96, 293
Tru9I TTAA 2 cut(s) 96, 293
TseI GCWGC 5 cut(s) 83, 281, 401, 404, 424
TspDTI ATGAA 2 cut(s) 184, 254
VpaK11BI GGWCC 1 cut(s) 113
XmnI GAANNNNTTC 2 cut(s) 275, 440
XspI CTAG 2 cut(s) 285, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.