Prupe.5G015700_v2.0.a1

Belongs to the profilin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0017896
Physical Location & Seq
Forward (+)
1706275 .. 1711430
5156 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G015700.1

Sequence Viewer

Length: 441 bp
ATGGATTGGGGTTTTGTACATAAAGCTTGGGACAAGTGGGCTTCTCCCAATATCGGCTCTGATAAGCCATTAAAAGCAGCTATATTGATCAACTATGACCCAACTGGTCCGTCTCGCTTATTGTCTACTATCGCAGAAGAAGAAGGGATAAAAGTGAATCCCATCGAATTGAGTCAATTCATTGATTTCATCAAATGTGACAAGCTCCAGACTGAGAGCTTCATTATTGGACCAAACCAATATATAGTCACATCAATTCATGAGAATTGGTTCTGTGCAAGGTGCATGAACACATCAAAATCTACTGGTGAAGGCGCTATCGTTATGCATACAGCAGCATTTCTCTTGGTTGCATTGTACGATGGTTCTATTGGCTCAGCATCTCGTGCTATGGTGGCTGTTGATCAGTTTGCGTGGCAATTAACTCGAAAGAATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Profilin

Protein Analysis

147

Amino Acids

16.22

Weight (kDa)

5.87

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19400
fragaria_vesca FvH4_5g24490 FvH4_5g24490 FvH4_5g24490
malus_domestica MD16G1286900.v1.1
prunus_persica Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1
pyrus_communis pycom16g25690
rosa_samantha Rh7BG277400
rosa_wichuraiana Rw7G024380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AfaI GTAC 2 cut(s) 18, 359
AfiI CCNNNNNNNGG 1 cut(s) 53
AluBI AGCT 4 cut(s) 26, 80, 205, 219
AluI AGCT 4 cut(s) 26, 80, 205, 219
Alw26I GTCTC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 77, 335
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 107, 230
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 2 cut(s) 107, 230
BauI CACGAG 1 cut(s) 384
BbvI GCAGC 2 cut(s) 89, 347
BccI CCATC 2 cut(s) 170, 356
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BclI TGATCA 2 cut(s) 87, 403
BcoDI GTCTC 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 318
BisI GCNGC 2 cut(s) 78, 336
BlpI GCTNAGC 1 cut(s) 376
BlsI GCNGC 2 cut(s) 79, 337
Bme18I GGWCC 2 cut(s) 107, 230
BmgT120I GGNCC 2 cut(s) 107, 230
BmsI GCATC 1 cut(s) 389
BpmI CTGGAG 1 cut(s) 191
Bpu1102I GCTNAGC 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 109, 310
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 204, 390
BseNI ACTGG 2 cut(s) 109, 310
BseXI GCAGC 2 cut(s) 89, 347
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 117
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 16
Bsp143I GATC 2 cut(s) 87, 403
Bsp1720I GCTNAGC 1 cut(s) 376
BspCNI CTCAG 2 cut(s) 205, 389
BspHI TCATGA 1 cut(s) 259
BsrGI TGTACA 1 cut(s) 16
BsrI ACTGG 2 cut(s) 109, 310
BssMI GATC 2 cut(s) 87, 403
BssSI CACGAG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 384
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 213, 376
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 2 cut(s) 90, 406
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 87, 403
BstMWI GCNNNNNNNGC 2 cut(s) 386, 395
BstV1I GCAGC 2 cut(s) 89, 347
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 107, 230
Csp6I GTAC 2 cut(s) 17, 358
CviAII CATG 2 cut(s) 260, 286
CviJI RGCY 9 cut(s) 26, 41, 57, 67, 80, 205, 219, 375, 398
CviKI_1 RGCY 9 cut(s) 26, 41, 57, 67, 80, 205, 219, 375, 398
CviQI GTAC 2 cut(s) 17, 358
DdeI CTNAG 2 cut(s) 213, 376
DpnI GATC 2 cut(s) 89, 405
DpnII GATC 2 cut(s) 87, 403
Eco47I GGWCC 2 cut(s) 107, 230
EcoT22I ATGCAT 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 2 cut(s) 263, 289
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 259, 285
FbaI TGATCA 2 cut(s) 87, 403
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 2 cut(s) 78, 336
Fsp4HI GCNGC 2 cut(s) 78, 336
GlaI GCGC 1 cut(s) 316
GluI GCNGC 2 cut(s) 78, 336
GsuI CTGGAG 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 318
HhaI GCGC 1 cut(s) 317
Hin1II CATG 2 cut(s) 263, 289
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 157, 172, 433
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 208, 260
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 137, 305
HpyCH4V TGCA 4 cut(s) 278, 285, 328, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 395
HpyF3I CTNAG 2 cut(s) 213, 376
Hsp92II CATG 2 cut(s) 263, 289
HspAI GCGC 1 cut(s) 315
Ksp22I TGATCA 2 cut(s) 87, 403
Kzo9I GATC 2 cut(s) 87, 403
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 3 cut(s) 90, 221, 291
Lsp1109I GCAGC 2 cut(s) 89, 347
LweI GCATC 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 197, 247
MalI GATC 2 cut(s) 89, 405
MboI GATC 2 cut(s) 87, 403
MboII GAAGA 2 cut(s) 149, 152
MluCI AATT 5 cut(s) 167, 176, 255, 265, 419
MlyI GAGTC 1 cut(s) 181
Mph1103I ATGCAT 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 2 cut(s) 71, 422
MwoI GCNNNNNNNGC 2 cut(s) 386, 395
NdeII GATC 2 cut(s) 87, 403
NlaIII CATG 2 cut(s) 263, 289
NmuCI GTSAC 2 cut(s) 197, 247
NsiI ATGCAT 1 cut(s) 330
PagI TCATGA 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 157, 433
PkrI GCNGC 2 cut(s) 79, 337
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PspPI GGNCC 2 cut(s) 107, 230
RsaI GTAC 2 cut(s) 18, 359
RsaNI GTAC 2 cut(s) 17, 358
SaqAI TTAA 2 cut(s) 71, 422
SatI GCNGC 2 cut(s) 78, 336
Sau3AI GATC 2 cut(s) 87, 403
Sau96I GGNCC 2 cut(s) 107, 230
SchI GAGTC 1 cut(s) 181
SetI ASST 5 cut(s) 28, 82, 207, 221, 284
SfaNI GCATC 1 cut(s) 389
SinI GGWCC 2 cut(s) 107, 230
Sse9I AATT 5 cut(s) 167, 176, 255, 265, 419
TaqI TCGA 2 cut(s) 165, 427
TasI AATT 5 cut(s) 167, 176, 255, 265, 419
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 2 cut(s) 157, 433
Tru1I TTAA 2 cut(s) 71, 422
Tru9I TTAA 2 cut(s) 71, 422
TseFI GTSAC 2 cut(s) 197, 247
TseI GCWGC 2 cut(s) 77, 335
Tsp45I GTSAC 2 cut(s) 197, 247
TspDTI ATGAA 5 cut(s) 169, 178, 211, 248, 302
TspGWI ACGGA 1 cut(s) 99
VpaK11BI GGWCC 2 cut(s) 107, 230
XmiI GTMKAC 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.