MD16G1286900.v1.1

Belongs to the profilin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0017896
Physical Location & Seq
Forward (+)
41106256 .. 41109942
3687 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1286900.v1.1.491

Sequence Viewer

Length: 444 bp
ATGGATTGGGGTTTTGTGCGTAAAGCTTGGGACAAGTGGGCTTCCCTCAACATTGCTTCTCCTGATGAGCCATTAAAAGCAGCTTTACTCATCAACTACGACCCAACTGGACCATCTCGCTTGTTGTCTACCATCGCTGAAGAGGAAGGAATAAAAGTGAATCCGATCGAATTGAGTCAATTTGTTGATTTCATCAAATGTGACAAGCAGCAGACTGAGAGCTTCGTTATTGGAACAAACCAATATGTGGTGACATCAATTCATGATAATTGGTTCTGTGCAAGATGCATGAACACATCAAAACATTCTGGTGAAGGCGCTATCGTTATGCAAACAGCAGCATTTCTGTTGGTTGGATTGTATGATGGTTCTATTGGCTCAGCATCTCGTGCTATGGCGGCTGTTGATCAGTTTGCATGGCAATTAAGTCGAAAGAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Profilin

Protein Analysis

148

Amino Acids

16.32

Weight (kDa)

5.3

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 10 - 146 8.1e-13 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19400
fragaria_vesca FvH4_5g24490 FvH4_5g24490 FvH4_5g24490
malus_domestica MD16G1286900.v1.1
prunus_persica Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1
pyrus_communis pycom16g25690
rosa_samantha Rh7BG277400
rosa_wichuraiana Rw7G024380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 247
AccI GTMKAC 1 cut(s) 128
AciI CCGC 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 247
AluBI AGCT 3 cut(s) 26, 83, 222
AluI AGCT 3 cut(s) 26, 83, 222
ApeKI GCWGC 3 cut(s) 80, 208, 338
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 262, 323
AvaII GGWCC 1 cut(s) 110
BauI CACGAG 1 cut(s) 387
BbvI GCAGC 3 cut(s) 92, 220, 350
BccI CCATC 3 cut(s) 121, 140, 359
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BclI TGATCA 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 321
BisI GCNGC 4 cut(s) 81, 209, 339, 399
BlpI GCTNAGC 1 cut(s) 379
BlsI GCNGC 4 cut(s) 82, 210, 340, 400
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 110
BmsI GCATC 2 cut(s) 275, 392
Bpu1102I GCTNAGC 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 207, 393
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 3 cut(s) 92, 220, 350
Bsh1285I CGRYCG 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 165, 406
Bsp1720I GCTNAGC 1 cut(s) 379
BspACI CCGC 1 cut(s) 398
BspCNI CTCAG 2 cut(s) 208, 392
BspHI TCATGA 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 112
BssMI GATC 2 cut(s) 165, 406
BssSI CACGAG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 216, 379
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 2 cut(s) 168, 409
BstMBI GATC 2 cut(s) 165, 406
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 389, 398
BstV1I GCAGC 3 cut(s) 92, 220, 350
BtgZI GCGATG 1 cut(s) 118
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 110
CviAII CATG 3 cut(s) 263, 289, 417
CviJI RGCY 7 cut(s) 26, 41, 70, 83, 222, 378, 401
CviKI_1 RGCY 7 cut(s) 26, 41, 70, 83, 222, 378, 401
DdeI CTNAG 2 cut(s) 216, 379
DpnI GATC 2 cut(s) 167, 408
DpnII GATC 2 cut(s) 165, 406
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 3 cut(s) 266, 292, 420
FaiI YATR 8 cut(s) 246, 264, 290, 329, 363, 395, 418, 440
FaqI GGGAC 1 cut(s) 44
FatI CATG 3 cut(s) 262, 288, 416
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 4 cut(s) 81, 209, 339, 399
Fsp4HI GCNGC 4 cut(s) 81, 209, 339, 399
GlaI GCGC 1 cut(s) 319
GluI GCNGC 4 cut(s) 81, 209, 339, 399
HaeII RGCGCY 1 cut(s) 321
HhaI GCGC 1 cut(s) 320
Hin1II CATG 3 cut(s) 266, 292, 420
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 2 cut(s) 160, 175
HphI GGTGA 2 cut(s) 262, 323
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 2 cut(s) 62, 263
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 2 cut(s) 140, 308
HpyCH4V TGCA 4 cut(s) 281, 288, 331, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 398
HpyF3I CTNAG 2 cut(s) 216, 379
Hsp92II CATG 3 cut(s) 266, 292, 420
HspAI GCGC 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 2 cut(s) 165, 406
LpnPI CCDG 3 cut(s) 75, 93, 294
Lsp1109I GCAGC 3 cut(s) 92, 220, 350
LweI GCATC 2 cut(s) 275, 392
MaeIII GTNAC 2 cut(s) 200, 250
MalI GATC 2 cut(s) 167, 408
MboI GATC 2 cut(s) 165, 406
MboII GAAGA 1 cut(s) 152
MluCI AATT 5 cut(s) 170, 179, 258, 268, 422
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 2 cut(s) 56, 136
Mph1103I ATGCAT 1 cut(s) 290
MseI TTAA 2 cut(s) 74, 425
MslI CAYNNNNRTG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 389, 398
NdeII GATC 2 cut(s) 165, 406
NlaIII CATG 3 cut(s) 266, 292, 420
NmuCI GTSAC 2 cut(s) 200, 250
NsiI ATGCAT 1 cut(s) 290
PagI TCATGA 1 cut(s) 262
PfeI GAWTC 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 247
PkrI GCNGC 4 cut(s) 82, 210, 340, 400
Ple19I CGATCG 1 cut(s) 168
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 110
PvuI CGATCG 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 2 cut(s) 74, 425
SatI GCNGC 4 cut(s) 81, 209, 339, 399
Sau3AI GATC 2 cut(s) 165, 406
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 1 cut(s) 184
SetI ASST 3 cut(s) 28, 85, 224
SfaNI GCATC 2 cut(s) 275, 392
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 5 cut(s) 170, 179, 258, 268, 422
SsiI CCGC 1 cut(s) 398
TaqI TCGA 2 cut(s) 168, 430
TasI AATT 5 cut(s) 170, 179, 258, 268, 422
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 2 cut(s) 74, 425
Tru9I TTAA 2 cut(s) 74, 425
TseFI GTSAC 2 cut(s) 200, 250
TseI GCWGC 3 cut(s) 80, 208, 338
Tsp45I GTSAC 2 cut(s) 200, 250
TspDTI ATGAA 3 cut(s) 181, 251, 305
Van91I CCANNNNNTGG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.