FvH4_5g24490

Belongs to the profilin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017896
Physical Location & Seq
Forward (+)
15829762 .. 15839308
9547 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24490.t3

Sequence Viewer

Length: 444 bp
ATGGATTGGGGATTTATTCACAAAGTTTGGGAGAAGTGGGCTTCTCTCAGTGTTGGCTCTTCAGGTCGCCCTCTAAAAGCTGCTATACTCCTCAACTATGATCCAACTGGACCGTCTCGCCTCTTGTCTACCATCGTCGAACAAGAAGGGATTAAAGTGACTCCTATTGAATTGAGCCAATTCATCAACTTCATCAAATGCGACAACCTCCGCACAGAGAGCTTCATTATTGGGCCCAACCAATATGTTGTCACATCAATTCATGAGAATTGGTTCTGTGCAAGGTGCATGAACACATCAAAACCAGCTGGTGAAGGGGCTATTGTTATGCAAACAGCAACATTTTTCTTGGTTGCACTATATGATGGCTCTATTGGCTCAGCTTCTCGTGCTATGTTTGCTGTTGATCAGTTTGTGTGGCAATTAAATCGACGAAACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Profilin

Protein Analysis

148

Amino Acids

16.48

Weight (kDa)

7.72

Isoelectric Point (pI)

29.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 68 - 168 2.1e-10 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19400
fragaria_vesca FvH4_5g24490 FvH4_5g24490 FvH4_5g24490
malus_domestica MD16G1286900.v1.1
prunus_persica Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1
pyrus_communis pycom16g25690
rosa_samantha Rh7BG277400
rosa_wichuraiana Rw7G024380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AciI CCGC 1 cut(s) 211
AclWI GGATC 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 4 cut(s) 80, 222, 308, 383
AluI AGCT 4 cut(s) 80, 222, 308, 383
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 233
ApaI GGGCCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 3 cut(s) 110, 233, 234
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 237
BauI CACGAG 1 cut(s) 387
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 140, 359
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 120
BisI GCNGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 379
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 110, 233, 234
BmiI GGNNCC 1 cut(s) 235
Bpu1102I GCTNAGC 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 61, 393
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 120
BsmBI CGTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 235
Bsp120I GGGCCC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 100, 406
Bsp1720I GCTNAGC 1 cut(s) 379
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 60, 392
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 112
BssMI GATC 2 cut(s) 100, 406
BssSI CACGAG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 47, 379
BstKTI GATC 2 cut(s) 103, 409
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 2 cut(s) 100, 406
BstMWI GCNNNNNNNGC 4 cut(s) 219, 375, 389, 398
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 55
CciI TCATGA 1 cut(s) 262
Cfr13I GGNCC 3 cut(s) 110, 233, 234
CviAII CATG 2 cut(s) 263, 289
DdeI CTNAG 2 cut(s) 47, 379
DpnI GATC 2 cut(s) 102, 408
DpnII GATC 2 cut(s) 100, 406
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 2 cut(s) 266, 292
FaiI YATR 9 cut(s) 86, 99, 246, 264, 290, 329, 361, 363, 395
FatI CATG 2 cut(s) 262, 288
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 235
Hin1II CATG 2 cut(s) 266, 292
HinfI GANTC 1 cut(s) 160
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 129
Hpy99I CGWCG 2 cut(s) 140, 435
HpyAV CCTTC 2 cut(s) 140, 308
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 4 cut(s) 281, 288, 331, 356
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 375, 389, 398
HpyF3I CTNAG 2 cut(s) 47, 379
Hsp92II CATG 2 cut(s) 266, 292
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 2 cut(s) 100, 406
LguI GCTCTTC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 48, 93, 294, 318
Lsp1109I GCAGC 1 cut(s) 67
MaeIII GTNAC 2 cut(s) 157, 250
MalI GATC 2 cut(s) 102, 408
MboI GATC 2 cut(s) 100, 406
MboII GAAGA 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 5 cut(s) 170, 179, 258, 268, 422
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 4 cut(s) 81, 101, 131, 218
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 2 cut(s) 153, 425
MspA1I CMGCKG 1 cut(s) 308
MwoI GCNNNNNNNGC 4 cut(s) 219, 375, 389, 398
NdeII GATC 2 cut(s) 100, 406
NlaIII CATG 2 cut(s) 266, 292
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 157, 250
PagI TCATGA 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 235
PspOMI GGGCCC 1 cut(s) 233
PspPI GGNCC 3 cut(s) 110, 233, 234
PvuII CAGCTG 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 64
SaqAI TTAA 2 cut(s) 153, 425
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 100, 406
Sau96I GGNCC 3 cut(s) 110, 233, 234
SchI GAGTC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 237
SetI ASST 8 cut(s) 67, 82, 210, 224, 287, 310, 385, 441
SinI GGWCC 1 cut(s) 110
Sse9I AATT 5 cut(s) 170, 179, 258, 268, 422
SsiI CCGC 1 cut(s) 211
TaaI ACNGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 138, 430
TasI AATT 5 cut(s) 170, 179, 258, 268, 422
Tru1I TTAA 2 cut(s) 153, 425
Tru9I TTAA 2 cut(s) 153, 425
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 2 cut(s) 157, 250
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 157, 250
TspDTI ATGAA 5 cut(s) 172, 181, 214, 251, 305
TspRI CASTG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.