AT4G20150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016642
Physical Location & Seq
Reverse (-)
10887934 .. 10889614
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G20150.1

Sequence Viewer

Length: 246 bp
ATGCCTATAAGTGCGACAATGGTCGGAGCTTTGCTGGGTCTCGGTACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCTTATATGCGTCATCCGTGGGAGCATGTGGTGGGTATGGGACTTGGTGCTGTGTTTGCGAACCAGCTCGTGAAATGGGATGTGAAGCTTAAGGAAGATCTTGATGTGATGCTCGCTAAGGCTAGAGCTGCTAATGAGCGCCGTTACTTTGATGAAGATCGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.21

Weight (kDa)

8.08

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016642)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20150
fragaria_vesca FvH4_3g13280
malus_domestica MD05G1243500.v1.1 MD10G1225400.v1.1
prunus_persica Prupe.4G120200_v2.0.a1
pyrus_communis pycom10g18920
rosa_chinensis RchiOBHm_Chr5g0021751
rosa_multiflora Rmu_ssc0000233.1_g000007
rosa_roxburghii Rroxscaffold_1G00056970
rosa_samantha Rh5AG157500 Rh5BG157200 Rh5CG171400 Rh5DG157400
rosa_wichuraiana Rw5G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 44
AciI CCGC 1 cut(s) 70
AfaI GTAC 2 cut(s) 46, 56
AflII CTTAAG 1 cut(s) 167
AluBI AGCT 5 cut(s) 29, 76, 145, 166, 206
AluI AGCT 5 cut(s) 29, 76, 145, 166, 206
Alw26I GTCTC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 44
BauI CACGAG 1 cut(s) 146
BbvI GCAGC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 220
BfrI CTTAAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 175
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 46
BmsI GCATC 1 cut(s) 177
BoxI GACNNNNGTC 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 2 cut(s) 91, 163
BseJI GATNNNNATC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 44
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 175, 235
BspACI CCGC 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 2 cut(s) 175, 235
BssSI CACGAG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 74, 192
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 2 cut(s) 91, 163
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 2 cut(s) 178, 238
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 175, 235
BstMWI GCNNNNNNNGC 2 cut(s) 134, 206
BstNSI RCATGY 1 cut(s) 107
BstPAI GACNNNNGTC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 2 cut(s) 91, 163
Cac8I GCNNGC 2 cut(s) 74, 192
CfoI GCGC 1 cut(s) 219
CseI GACGC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 45, 55
CviAII CATG 1 cut(s) 104
CviJI RGCY 6 cut(s) 29, 76, 145, 166, 200, 206
CviKI_1 RGCY 6 cut(s) 29, 76, 145, 166, 200, 206
CviQI GTAC 2 cut(s) 45, 55
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 177, 237
DpnII GATC 2 cut(s) 175, 235
Eco31I GGTCTC 1 cut(s) 44
FaeI CATG 1 cut(s) 107
FaiI YATR 5 cut(s) 8, 84, 86, 105, 116
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 2 cut(s) 78, 170
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 220
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 219
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 3 cut(s) 148, 179, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 206
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 1 cut(s) 217
KpnI GGTACC 1 cut(s) 48
Kzo9I GATC 2 cut(s) 175, 235
LmnI GCTCC 3 cut(s) 26, 81, 100
LpnPI CCDG 3 cut(s) 20, 62, 155
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 221
MalI GATC 2 cut(s) 177, 237
MboI GATC 2 cut(s) 175, 235
MboII GAAGA 2 cut(s) 185, 245
MflI RGATCY 1 cut(s) 175
MmeI TCCRAC 2 cut(s) 4, 84
MnlI CCTC 1 cut(s) 77
MseI TTAA 2 cut(s) 168, 244
MspCI CTTAAG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 134, 206
NdeII GATC 2 cut(s) 175, 235
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 46
NspI RCATGY 1 cut(s) 107
PkrI GCNGC 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 2 cut(s) 46, 56
RsaNI GTAC 2 cut(s) 45, 55
SaqAI TTAA 2 cut(s) 168, 244
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 175, 235
SetI ASST 5 cut(s) 31, 78, 147, 168, 208
SfaNI GCATC 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SsiI CCGC 1 cut(s) 70
SspMI CTAG 1 cut(s) 201
TatI WGTACW 1 cut(s) 54
Tru1I TTAA 2 cut(s) 168, 244
Tru9I TTAA 2 cut(s) 168, 244
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 84
Vha464I CTTAAG 1 cut(s) 167
XceI RCATGY 1 cut(s) 107
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.